rna1770, rna1770 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1770
Unique Name	rna1770
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	616
Alignment location	CM002458.1:80263..81237 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101812g2.7441.mrna
Orig protein id	gnl\|cribi\|Naga_101812g2.7441
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:80263..81237 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101812g2	gene1703	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28908.1	cds1766	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1770	rna1770-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:80263..81237-
coding sequence from alignment at CM002458.1:80263..81237-

mRNA sequence

>rna1770 ID=rna1770|Name=rna1770|organism=Nannochloropsis gaditana|type=mRNA|length=616bp
CCCNCCCTCCCTCCCGCCTTCCCCCTGTCCCTCTATCGGTACTCCAGGCC
TGGCTGGACGTTCCATGGGAAAGGGTTGTGGTTGCTGGAAGAGGAAGGGG
GGGAGGGCGGGAGGGAGGGCGGGAGGGAGGGAGGGGTCCGGCCTGCCTTG
ACGGTGGTGGGGAGCTCGAACTACGGCTATCGATCGTTTGAAAGAGATTT
GGAGTCTCAAGTGTGGCTGATGAGTACCGAGCCCGAATGGAAGAGGAAGT
TGCGGCGGGAAAGAGGGAGGTTGCTGGCGGATTGCGCGGTGGCGGAGGGC
GGGAGGGAGGAGGGGATGGAGGGCGGGAGGGAGGGTGGCTTGCACGGGCA
TCGGAGAGTGTGGGCGCCGATTGTGACCAGATGGACTCGAGGTTTGTTGT
GAGGAGGAAAGGAAGGAAGAAAGGGAGGGAGGGAGGGAGGGAGGGAAGGA
TGGGGGGAGAACGGGGTGCAGGTGGGCGCGGGAAGCGAATTGGGACGTAC
ATATGCTGAGGGGTGGGTGTGGCGTGAAATTTGTGGATGTAGGTAGGGAG
GTAGCCTCACAACGAGAAGAGGGAAATCGGTTCGAAATCAAGAAAATAAG
ATATAGACGGGAAGGA

protein sequence of rna1770

>rna1770-protein ID=rna1770-protein|Name=rna1770|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
PPSLPPSLPPSLLPFLFTPPSSLSESCRSGSQHRSSSSPLTSLPPSLPPS
LPARGHHRRLLHRLPHSHHLLGERGECHRRAGYPPLLSRQEEVLGLGALS
RPPALPPALLPALSRLQTKVARGVAGGRRGREGGRRDWWMGWAMEDIVGI
TKKRINEGNGRGENGRRGGRTSTMRSSAAPPVELATWQGGGSPRGTGRQR
RRWEAVGILYLGPPRRTIHVDGGVRGDQGGHRGDWM

mRNA from alignment at CM002458.1:80263..81237-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1770 ID=rna1770|Name=rna1770|organism=Nannochloropsis gaditana|type=mRNA|length=975bp|location=Sequence derived from alignment at CM002458.1:80263..81237- (Nannochloropsis gaditana)
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTTCCTCTT
TACCCCTCCTTCCTCTCTCTCTGAATCGTGTCGGTCTGGATCCCAGCACA
GGTCTTCCTCTTCACCTCTGACCTCCCTTCCTCCCTCCCTCCCTCCCTCC
CTCCCAGCGCGTGGTCATCATCGTCGCCTCCTGCATCGTCTTCCGCACTC
CCACCACCTTCTTGGGGAACGTGGGGAGTGCCATCGCCGTGCTGGGTACC
CTCCTCTACTCTCTCGCCAAGAAGAAGTACTCGGCCTCGGCGCACTGAGC
CGCCCGCCCGCCCTCCCTCCCGCCCTCCTTCCCGCCCTCTCCCGCCTGCA
GACTAAGGTCGCCAGGGGCGTGGCGGGGGGGAGGAGAGGGAGGGAGGGAG
GAAGACGGGACTGGTGGATGGGATGGGCGATGGAGGATATCGTCGGTATT
ACAAAAAAGCGTATTAATGAGGGAAATGGAAGGGGTGAGAATGGACGAAG
AGGGGGGAGGACATCGACGATGCGATCCTCGGCTGCCCCCCCCGTTGAAC
TGGCAACGTGGCAGGGTGGAGGAAGCCCAAGGGGTACGGGAAGGCAAAGA
AGAAGGTGGGAAGCGGTCGGAATACTATATCTCGGACCGCCCAGGCGGAC
TATTCACGTGGATGGGGGTGTGAGAGGTGACCAGGGGGGGCATAGGGGAG
ACTGGATGTGAATGGAAAGCAAAGAGATGCGCATGGGGGCACAAGATTGA
CCAAGCCTGCTCAATGGGGCGCAGAGGGACAAGCATGGCAAGGAAGAGAA
GAAAGAAAGAATTGGAAGAGGAGGGCGGCGAAGGGGGAAGAAAAAGAGAG
GGAGCTTGGGGGGGTACAGTCACCGCGGCTGCACAGACGAGAGAGGCGGG
ATGGAGTGCGTGAACGGCTGGGATAAAAAAATGGAAAGCAAAGCAACGGA
GACATCCTACAGGGCCCAGAAAGCC

Coding sequence (CDS) from alignment at CM002458.1:80263..81237-

>rna1770 ID=rna1770|Name=rna1770|organism=Nannochloropsis gaditana|type=CDS|length=711bp|location=Sequence derived from alignment at CM002458.1:80263..81237- (Nannochloropsis gaditana)
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTTCCTCTT
TACCCCTCCTTCCTCTCTCTCTGAATCGTGTCGGTCTGGATCCCAGCACA
GGTCTTCCTCTTCACCTCTGACCTCCCTTCCTCCCTCCCTCCCTCCCTCC
CTCCCAGCGCGTGGTCATCATCGTCGCCTCCTGCATCGTCTTCCGCACTC
CCACCACCTTCTTGGGGAACGTGGGGAGTGCCATCGCCGTGCTGGGTACC
CTCCTCTACTCTCTCGCCAAGAAGAAGTACTCGGCCTCGGCGCACTGAGC
CGCCCGCCCGCCCTCCCTCCCGCCCTCCTTCCCGCCCTCTCCCGCCTGCA
GACTAAGGTCGCCAGGGGCGTGGCGGGGGGGAGGAGAGGGAGGGAGGGAG
GAAGACGGGACTGGTGGATGGGATGGGCGATGGAGGATATCGTCGGTATT
ACAAAAAAGCGTATTAATGAGGGAAATGGAAGGGGTGAGAATGGACGAAG
AGGGGGGAGGACATCGACGATGCGATCCTCGGCTGCCCCCCCCGTTGAAC
TGGCAACGTGGCAGGGTGGAGGAAGCCCAAGGGGTACGGGAAGGCAAAGA
AGAAGGTGGGAAGCGGTCGGAATACTATATCTCGGACCGCCCAGGCGGAC
TATTCACGTGGATGGGGGTGTGAGAGGTGACCAGGGGGGGCATAGGGGAG
ACTGGATGTGA

Synonyms

Publications