rna1769, rna1769 (mRNA) Nannochloropsis gaditana

Overview
Namerna1769
Unique Namerna1769
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length822
Alignment locationCM002458.1:79613..80228 +

Link to JBrowse

Properties
Property NameValue
Productcdp-diacylglycerol--glycerol-3-phosphate 3- mitochondrial-like protein
Orig transcript idgnl|cribi|Naga_101812g1.7440.mrna
Orig protein idgnl|cribi|Naga_101812g1.7440
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:79613..80228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101812g1gene1702Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1769rna1769-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28907.1cds1765Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1769 ID=rna1769|Name=rna1769|organism=Nannochloropsis gaditana|type=mRNA|length=822bp
ATGAATCTCTACGCAAGTGCTTGTTGTTATTGTCTCCGCCCGATTGCCGC
ATGCGAAACACTGTCTCTCATGTCGTATCGTTTGTTACGCCGACGACAGC
ATCGCAATCTTTTATCTGCATCTTGTTTGACATTGAAACCACGCAGTCCG
CCAACCGTATTCATGAGCACCACCACCACCTCCTCCTCCCGTTCCTCCAC
CTTTCCCTCTCCTTCGCCGCACGCCTTCCTCTCCTCCCTCCTCGAGAATG
CACACGCTCCTCGCACGCCCCTCTTCCCACTGCGTGCCTCCTCCGTCTCC
TTCCTCCCCGACCCGCCAGCTTTCTATCAAACCCTTCTGGACGCCATCGC
CCGGAGTCACGATCGAATCACCCTCTCGGCGCTCTACCTAGGCCATGGCC
CCATGGAACAGGCTTTGGTTCAGCACATTTTGGCCGCCTGTCACAAAAAA
CCGAATTTGCGCGTGCAAATCCTTCTAGATCATTCGAGAGGAACCCGAGG
GCACCGGCAGGGCACCTCCTCTCTCACCACGCTCGCCCCCCTCCTTTCCC
TCACTCGCACCCGGCCTTCCTCCACCTCCCTCCAGCCCCAAGCCCACGTC
GCATTGTTGCGCATGCCTCAACTGTCCGGGCCGTGGGCCCGGCGTTTTAT
CCCGAGCCCGCTCAATGAGGTCCTGGCAGTGTCGCATGTGAAAGCCCTCG
CTTTCGACGACGAAGAAATCCTCTTGACGGGGGCAAACCTCTCCCACGAT
TATTTCTCGAGGCGGCAGGACCGGCGCTGGCACCAGCTTCTCAAGGCGTG
GTGCGGGATTTTGGGGCCCTGA
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protein sequence of rna1769

>rna1769-protein ID=rna1769-protein|Name=rna1769|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
PXLPPAFPLSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPAL
TVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLLADCAVAEG
GREEGMEGGREGGLHGHRRVWAPIVTRWTRGLL
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mRNA from alignment at CM002458.1:79613..80228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1769 ID=rna1769|Name=rna1769|organism=Nannochloropsis gaditana|type=mRNA|length=616bp|location=Sequence derived from alignment at CM002458.1:79613..80228+ (Nannochloropsis gaditana)
CCCNccctccctcccgccttccccctgtccctctaTCGGTACTCCAGGCC
TGGCTGGACGTTCCATGGGAAAGGGTTGTGgttgctggaagaggaagggg
gggagggcgggagggagggcgggagggagggaggggtccgGCCTGCCTTG
ACGGTGGTGGGGAGCTCGAACTACGGCTATCGATCGTTTGAAAGAGATTT
GGAGTCTCAAGTGTGGCTGATGAGTACCGAGCCcgaatggaagaggaagt
tgcggcgggaaagagggaggttgCTGGCGGATTgcgcggtggcggagggc
gggagggaggaggggatggagggcgggagggagggtggcttGCACGGGCA
TCGGAGAGTGTGGGCGCCGATTGTGACCAGATGGACTCGAGGTTTGttgt
gaggaggaaaggaaggaagaaagggagggagggagggagggagggaagga
tggggggagaACGGGGTGCAGGTGGGCGCGGGAAGCGAATTGGGACGTAC
ATATGCTGAGGGGTGGGTGTGGCGTGAAATTTGTGGATGTAGGTAGGGAG
GTAGCCTCACaacgagaagagggaaatcgGTTCGAAATCAAGAAAATAAG
ATAtagacgggaagga
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Coding sequence (CDS) from alignment at CM002458.1:79613..80228+

>rna1769 ID=rna1769|Name=rna1769|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002458.1:79613..80228+ (Nannochloropsis gaditana)
CCCNccctccctcccgccttccccctgtccctctaTCGGTACTCCAGGCC
TGGCTGGACGTTCCATGGGAAAGGGTTGTGgttgctggaagaggaagggg
gggagggcgggagggagggcgggagggagggaggggtccgGCCTGCCTTG
ACGGTGGTGGGGAGCTCGAACTACGGCTATCGATCGTTTGAAAGAGATTT
GGAGTCTCAAGTGTGGCTGATGAGTACCGAGCCcgaatggaagaggaagt
tgcggcgggaaagagggaggttgCTGGCGGATTgcgcggtggcggagggc
gggagggaggaggggatggagggcgggagggagggtggcttGCACGGGCA
TCGGAGAGTGTGGGCGCCGATTGTGACCAGATGGACTCGAGGTTTGttgt
ga
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Synonyms
Publications