EWM28907.1, cds1765 (CDS) Nannochloropsis gaditana

Overview
NameEWM28907.1
Unique Namecds1765
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:79613..80014 +

Link to JBrowse

Properties
Property NameValue
Start range79613
Start range.
Protein idEWM28907.1
Productcdp-diacylglycerol--glycerol-3-phosphate 3- mitochondrial-like protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101812g1.7440.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:79613..80014 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0008654phospholipid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
GO:0016780phosphotransferase activity, for other substituted phosphate groups
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR016270PLipase-D_PtdSer-synthase-type
Homology
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|585111358|gb|EWM28907.1| (cdp-diacylglycerol--glycerol-3-phosphate 3- mitochondrial-like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 256.529 bits (654), Expect = 2.711e-86
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 PXLPPAFPLSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLLADCAVAEGGREEGMEGGREGGLHGHRRVWAPIVTRWTRGLL 133
            PXLPPAFPLSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLLADCAVAEGGREEGMEGGREGGLHGHRRVWAPIVTRWTRGLL
Sbjct:    1 PXLPPAFPLSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLLADCAVAEGGREEGMEGGREGGLHGHRRVWAPIVTRWTRGLL 133          
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|168053755|ref|XP_001779300.1| (predicted protein [Physcomitrella patens] >gi|162669312|gb|EDQ55902.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 79.7221 bits (195), Expect = 6.402e-15
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 0
Query:    9 LSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLLADCAVAEGGREEGMEGGREGGLHG 116
            L +Y Y R GWTFH KGLW     G E G          P++++VGSSN GYRS +RDLE+QV+L +  P  +++L RER  L  D +       +G +  R+GG   
Sbjct:  351 LMIYEYERAGWTFHAKGLWC-NLPGAEDG----------PSVSLVGSSNLGYRSRDRDLEAQVYLFTLAPRLQQQLERERDELFVDASRVTSSIFQGPD--RQGGFFA 445          
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|1084297966|ref|XP_018652079.1| (LOW QUALITY PROTEIN: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Schistosoma mansoni] >gi|353232120|emb|CCD79475.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Schistosoma mansoni])

HSP 1 Score: 78.5666 bits (192), Expect = 1.039e-14
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    9 LSLYRYSRPGWTFHGKGLWL--LEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLLA 93
            +++Y Y RP WTFH KGLW+  + ++  +  ++         +L++VGSSN+ YRS  RDLESQ+ +++T P+ ++ L  ER  L +
Sbjct:  211 INIYEYIRPDWTFHAKGLWIESVADDSQDEEKKTADHHHPSYSLSLVGSSNFSYRSLNRDLESQLCIVTTNPKLRQCLYNERCHLFS 297          
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|1026775683|gb|OAE34534.1| (hypothetical protein AXG93_1247s1060 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 77.0258 bits (188), Expect = 6.939e-14
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 0
Query:    9 LSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLLA 93
            LS+Y Y R GWTFH KGLW        G           P++T+VGSSN+GYRS +RDLE+QV+LM++ P  + +L+ ER  L +
Sbjct:  433 LSIYEYERSGWTFHAKGLWCTLPGDIHG-----------PSVTLVGSSNFGYRSRDRDLEAQVFLMTSNPRLRGQLKFERDALFS 506          
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|673036204|ref|XP_008872063.1| (hypothetical protein H310_08181 [Aphanomyces invadans] >gi|574472502|gb|ETV99507.1| hypothetical protein H310_08181 [Aphanomyces invadans])

HSP 1 Score: 75.0998 bits (183), Expect = 2.894e-13
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 0
Query:    8 PLSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRL 91
            PL+L  Y+R  WTFH KG+W+  ++                ALTVVGSSN+G RS+ RDLESQV+L ST    + +L+ E  RL
Sbjct:  356 PLTLREYNRDAWTFHAKGMWIQHDD---------------EALTVVGSSNFGQRSYGRDLESQVFLYSTNSTLRSQLKDEYTRL 424          
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|698801138|ref|XP_009833598.1| (hypothetical protein H257_09164 [Aphanomyces astaci] >gi|574111189|gb|ETV76685.1| hypothetical protein H257_09164 [Aphanomyces astaci])

HSP 1 Score: 75.0998 bits (183), Expect = 2.934e-13
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 0
Query:    9 LSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRL 91
            L+L  ++R GWTFH KG+W+  ++                ALTVVGSSN+G RS+ RDLESQV+L +T+   + KL+ E  RL
Sbjct:  361 LTLREFNRDGWTFHAKGMWIQHQD---------------EALTVVGSSNFGQRSYGRDLESQVFLYTTDATLQSKLKDEYSRL 428          
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|734548277|gb|KHN76448.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Toxocara canis])

HSP 1 Score: 74.3294 bits (181), Expect = 6.351e-13
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0
Query:    9 LSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLL 92
            + L+ Y+RP WT+H KGLW+  +E              R + T+VGSSNYGYRS  RDLE+Q+ ++++    K +L  E  RL+
Sbjct:  384 VQLFEYARPEWTYHAKGLWIESKES-------------RLSATLVGSSNYGYRSVHRDLEAQLLIVTSNEHLKSRLHSEHSRLM 454          
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|936602531|ref|XP_014215007.1| (PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Copidosoma floridanum])

HSP 1 Score: 74.3294 bits (181), Expect = 6.840e-13
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 0
Query:    9 LSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLLA 93
            + L+ +SRPGWT+H KGLW                G  +P+ T+VGS N+GYRS ERDLE+Q+ + +   E +  L++E  RL +
Sbjct:  378 IKLWEFSRPGWTYHAKGLWY------------SMPGQQKPSFTLVGSPNFGYRSVERDLETQIAVATRNTELQESLQKECDRLFS 450          
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|308494460|ref|XP_003109419.1| (CRE-PGS-1 protein [Caenorhabditis remanei] >gi|308246832|gb|EFO90784.1| CRE-PGS-1 protein [Caenorhabditis remanei])

HSP 1 Score: 73.9442 bits (180), Expect = 6.918e-13
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0
Query:    9 LSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLL 92
            + +Y+Y R GWTFH KGLW                      +T++GSSNYGYRS  RDLE+Q+ +++ +P+   +LR E+ RL 
Sbjct:  344 VQMYQYFREGWTFHAKGLWAEHHN---------------QIMTLIGSSNYGYRSVHRDLEAQIMVVTKDPKLVERLREEKNRLF 412          
BLAST of EWM28907.1 vs. NCBI_GenBank
Match: gi|321477273|gb|EFX88232.1| (hypothetical protein DAPPUDRAFT_305718 [Daphnia pulex])

HSP 1 Score: 73.9442 bits (180), Expect = 7.387e-13
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 0
Query:    9 LSLYRYSRPGWTFHGKGLWLLEEEGGEGGREGGREGGVRPALTVVGSSNYGYRSFERDLESQVWLMSTEPEWKRKLRRERGRLLADCAVAEG 100
            + L+ Y R  WTFH KGLW+               G  RP+ T+VGS N+GYRS  RDLE+Q+ +++  P  + +L RER  L     +  G
Sbjct:  376 IRLWEYQRQNWTFHAKGLWI-----------SFNRGDPRPSFTLVGSPNFGYRSVYRDLEAQLAVVTINPTLRDQLHRERKNLFQQADLVNG 456          
The following BLAST results are available for this feature:
BLAST of EWM28907.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111358|gb|EWM28907.1|2.711e-86100.00cdp-diacylglycerol--glycerol-3-phosphate 3- mitoch... [more]
gi|168053755|ref|XP_001779300.1|6.402e-1540.74predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1084297966|ref|XP_018652079.1|1.039e-1437.93LOW QUALITY PROTEIN: CDP-diacylglycerol--glycerol-... [more]
gi|1026775683|gb|OAE34534.1|6.939e-1445.88hypothetical protein AXG93_1247s1060 [Marchantia p... [more]
gi|673036204|ref|XP_008872063.1|2.894e-1345.24hypothetical protein H310_08181 [Aphanomyces invad... [more]
gi|698801138|ref|XP_009833598.1|2.934e-1344.58hypothetical protein H257_09164 [Aphanomyces astac... [more]
gi|734548277|gb|KHN76448.1|6.351e-1340.48CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|936602531|ref|XP_014215007.1|6.840e-1340.00PREDICTED: CDP-diacylglycerol--glycerol-3-phosphat... [more]
gi|308494460|ref|XP_003109419.1|6.918e-1339.29CRE-PGS-1 protein [Caenorhabditis remanei] >gi|308... [more]
gi|321477273|gb|EFX88232.1|7.387e-1338.04hypothetical protein DAPPUDRAFT_305718 [Daphnia pu... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1769rna1769Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications