rna1768, rna1768 (mRNA) Nannochloropsis gaditana

Overview
Namerna1768
Unique Namerna1768
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length465
Alignment locationCM002458.1:78246..79200 +

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Properties
Property NameValue
Productphosphatidylglycerophosphate synthase 1
Orig transcript idgnl|cribi|Naga_101156g2.9568.mrna
Orig protein idgnl|cribi|Naga_101156g2.9568
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:78246..79200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101156g2gene1701Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1768rna1768-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28909.1cds1764Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1768 ID=rna1768|Name=rna1768|organism=Nannochloropsis gaditana|type=mRNA|length=465bp
ATGTCCTCGGTGGCACCCAGCGGGCGGGAGAAGGAAGAGGGAGGGAAGGG
CGCGTCGGCCTCCAAACCCCAGCCACGGCAGCAACAGCGTATCATCTCCC
GGACGTTGTTGGATGAAAATTTGTCGGAATTTACGAAAGGAAAACCCCTC
CCCCTCTACATACTCGACCAAGCCTACTTCATGCGGGCCATGATCAACGA
CATCTCCTTCCTCTCGTACATCAAGATCATCGACTACTCCATCCTCATCG
GCGTGGACGAGGAGCAAAAGGCTCTCGTCGTCGGGATCATAGACTATATG
CGCCAGTACGACATTATCAAGAAAATGGAACGGATGGGGAAGTCCGTCGG
GATGATCGCCGGGCAGGCCGAGCCCACCGTGATCCAACCGCAGCCCTACC
GCGCTCGCTTTCTGGGGGCGATGGAGAAGTACTTCGCGGGGATTCCTGAC
AAGTGGACTCCATAG
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protein sequence of rna1768

>rna1768-protein ID=rna1768-protein|Name=rna1768|organism=Nannochloropsis gaditana|type=polypeptide|length=273bp
MNLYASACCYCLRPIAACETLSLMSYRLLRRRQHRNLLSASCLTLKPRSP
PTVFMSTTTTSSSRSSTFPSPSPHAFLSSLLENAHAPRTPLFPLRASSVS
FLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKK
PNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHV
ALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHD
YFSRRQDRRWHQLLKAWCGILGP
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mRNA from alignment at CM002458.1:78246..79200+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1768 ID=rna1768|Name=rna1768|organism=Nannochloropsis gaditana|type=mRNA|length=955bp|location=Sequence derived from alignment at CM002458.1:78246..79200+ (Nannochloropsis gaditana)
ATGAATCTCTACGCAAGTGCTTGTTGTTATTGTCTCCGCCCGATTGCCGC
ATGCGAAACACTGTCTCTCATGTCGTATCGTTTGTTACGCCGACGACAGC
ATCGCAATCTTTTATCTGCATCTTGTTTGACATTGAAACCACGCAGTCCG
CCAACCGTATTCAtgagcaccaccaccacctcctcctcccgttcctccac
ctttccctctccttcgccgcacgccttcctctcctccctcctcgagaATG
CACACGCTCCTCGcacgcccctcttcccactgcgtgcctcctccgtctcc
ttcctccccgacccgCCAGCTTTCTATCAAACCCTTCTGGACGCCATCGC
CCGGAGTCACGATCGAATCACCCTCTCGGCGCTCTACCTAGGCCATGGCC
CCATGGAACAGGCTTTGGTTCAGCACATTTTGGCCGCCTGTCACAAAAAA
CCGAATTTGCGCGTGCAAATCCTTCTAGATCATTCGAGAGGAACCCGAGG
GCACCGGCAgggcacctcctctctcaccacgctcgcccccctcctttccc
tcactcgcacccggccttcctccacctccctccagccccaaGCCCACGTC
GCATTGTTGCGCATGCCTCAACTGTCCGGGCCGTGGGCCCGGCGTTTTAT
CCCGAGCCCGCTCAATGAGGTCCTGGCAGTGTCGCATGTGAAAGCCCTCG
CTTTCGACGACGAAGAAATCCTCTTGACGGGGGCAAACCTCTCCCACGAT
TATTTCTCGAGGCGGCAGGACCGGTATGTCCACGTGCGGGGACCCTGGCC
TAATTTTTCCGGGGCAGATGGGGGGGACGGCCGGCTCGCCAGCCTCCCGC
TCTTCTACCATGGACTCGTTGAGACTCTGATGCCCTTcggcctctctccc
gcccaggCGCTGGCACCAGCTTCTCAAGGCGTGGTGCGGGATTTTGGGGC
CCTGA
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Coding sequence (CDS) from alignment at CM002458.1:78246..79200+

>rna1768 ID=rna1768|Name=rna1768|organism=Nannochloropsis gaditana|type=CDS|length=1644bp|location=Sequence derived from alignment at CM002458.1:78246..79200+ (Nannochloropsis gaditana)
ATGAATCTCTACGCAAGTGCTTGTTGTTATTGTCTCCGCCCGATTGCCGC
ATGCGAAACACTGTCTCTCATGTCGTATCGTTTGTTACGCCGACGACAGC
ATCGCAATCTTTTATCTGCATCTTGTTTGACATTGAAACCACGCAGTCCG
CCAACCGTATTCAtgagcaccaccaccacctcctcctcccgttcctccac
ctttccctctccttcgccgcacgccttcctctcctccctcctcgagaATG
CACACGCTCCTCGcacgcccctcttcccactgcgtgcctcctccgtctcc
ttcctccccgacccgCCAGCTTTCTATCAAACCCTTCTGGACGCCATCGC
CCGGAGTCACGATCGAATCACCCTCTCGGCGCTCTACCTAGGCCATGGCC
CCATGGAACAGGCTTTGGTTCAGCACATTTTGGCCGCCTGTCACAAAAAA
CCGAATTTGCGCGTGCAAATCCTTCTAGATCATTCGAGAGGAACCCGAGG
GCACCGGCAgggcacctcctctctcaccacgctcgcccccctcctttccc
tcactcgcacccggccttcctccacctccctccagccccaaGCCCACGTC
GCATTGTTGCGCATGCCTCAACTGTCCGGGCCGTGGGCCCGGCGTTTTAT
CCCGAGCCCGCTCAATGAGGTCCTGGCAGTGTCGCATGTGAAAGCCCTCG
CTTTCGACGACGAAGAAATCCTCTTGACGGGGGCAAACCTCTCCCACGAT
TATTTCTCGAGGCGGCAGGACCGgCGCTGGCACCAGCTTCTCAAGGCGTG
GTGCGGGATTTTGGGGCCCTGAATGAATCTCTACGCAAGTGCTTGTTGTT
ATTGTCTCCGCCCGATTGCCGCATGCGAAACACTGTCTCTCATGTCGTAT
CGTTTGTTACGCCGACGACAGCATCGCAATCTTTTATCTGCATCTTGTTT
GACATTGAAACCACGCAGTCCGCCAACCGTATTCAtgagcaccaccacca
cctcctcctcccgttcctccacctttccctctccttcgccgcacgccttc
ctctcctccctcctcgagaATGCACACGCTCCTCGcacgcccctcttccc
actgcgtgcctcctccgtctccttcctccccgacccgCCAGCTTTCTATC
AAACCCTTCTGGACGCCATCGCCCGGAGTCACGATCGAATCACCCTCTCG
GCGCTCTACCTAGGCCATGGCCCCATGGAACAGGCTTTGGTTCAGCACAT
TTTGGCCGCCTGTCACAAAAAACCGAATTTGCGCGTGCAAATCCTTCTAG
ATCATTCGAGAGGAACCCGAGGGCACCGGCAgggcacctcctctctcacc
acgctcgcccccctcctttccctcactcgcacccggccttcctccacctc
cctccagccccaaGCCCACGTCGCATTGTTGCGCATGCCTCAACTGTCCG
GGCCGTGGGCCCGGCGTTTTATCCCGAGCCCGCTCAATGAGGTCCTGGCA
GTGTCGCATGTGAAAGCCCTCGCTTTCGACGACGAAGAAATCCTCTTGAC
GGGGGCAAACCTCTCCCACGATTATTTCTCGAGGCGGCAGGACCGgCGCT
GGCACCAGCTTCTCAAGGCGTGGTGCGGGATTTTGGGGCCCTGA
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Synonyms
Publications