EWM28909.1, cds1764 (CDS) Nannochloropsis gaditana

Overview
NameEWM28909.1
Unique Namecds1764
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:78246..79018 +
Alignment locationCM002458.1:79152..79200 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28909.1
Productphosphatidylglycerophosphate synthase 1
Orig transcript idgnl|cribi|Naga_101156g2.9568.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:78246..79018 +
CM002458.1supercontigCM002458.1:79152..79200 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0008654phospholipid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
GO:0003824catalytic activity
GO:0016780phosphotransferase activity, for other substituted phosphate groups
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR001736PLipase_D/transphosphatidylase
IPR016270PLipase-D_PtdSer-synthase-type
Homology
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|585111361|gb|EWM28909.1| (phosphatidylglycerophosphate synthase 1 [Nannochloropsis gaditana])

HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0
Query:    1 MNLYASACCYCLRPIAACETLSLMSYRLLRRRQHRNLLSASCLTLKPRSPPTVFMSTTTTSSSRSSTFPSPSPHAFLSSLLENAHAPRTPLFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGILGP 273
            MNLYASACCYCLRPIAACETLSLMSYRLLRRRQHRNLLSASCLTLKPRSPPTVFMSTTTTSSSRSSTFPSPSPHAFLSSLLENAHAPRTPLFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGILGP
Sbjct:    1 MNLYASACCYCLRPIAACETLSLMSYRLLRRRQHRNLLSASCLTLKPRSPPTVFMSTTTTSSSRSSTFPSPSPHAFLSSLLENAHAPRTPLFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGILGP 273          
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|553194733|ref|XP_005856023.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, partial [Nannochloropsis gaditana CCMP526] >gi|422293036|gb|EKU20337.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 514.612 bits (1324), Expect = 0.000e+0
Identity = 259/261 (99.23%), Postives = 259/261 (99.23%), Query Frame = 0
Query:    1 MNLYASACCYCLRPIAACETLSLMSYRLLRRRQHRNLLSASCLTLKPRSPPTVFMSTTTTSSSRSSTFPSPSPHAFLSSLLENAHAPRTPLFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWH 261
            MNLYASACCYCLRPIAACETLSLMSYRLLRRRQHRNLLSASCLTLKPRSPPTVFMSTTTTSSSRSSTFPSPSPHAFLSSLLENAHAPRTPLFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDR  H
Sbjct:    1 MNLYASACCYCLRPIAACETLSLMSYRLLRRRQHRNLLSASCLTLKPRSPPTVFMSTTTTSSSRSSTFPSPSPHAFLSSLLENAHAPRTPLFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRYVH 261          
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|1214691011|gb|OWZ06060.1| (Phosphatidylglycerolphosphate synthase, partial [Phytophthora megakarya])

HSP 1 Score: 139.043 bits (349), Expect = 1.542e-34
Identity = 88/181 (48.62%), Postives = 112/181 (61.88%), Query Frame = 0
Query:   91 LFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGIL 271
            LFPLR+S V+ L  P  FYQ LL  I R+  R+++S+LYLG G +E+ALV  + A    KP L+VQI+LD+SRG RG     SS+T LAPLL   +  P +  L       L R+PQLSG  A+  +P P NE L VSH K     DE ++L+GANLS DYF+ RQD R+ QL    CG L
Sbjct:    5 LFPLRSSDVALLASPTDFYQQLLRNIQRAEHRVSISSLYLGTGQLERALVDALAARLRDKPKLQVQIVLDYSRGQRGG-VSASSVTMLAPLL---KEFPDNVEL------FLFRVPQLSGLKAK--LPPPFNETLGVSHAKVYLV-DETLVLSGANLSADYFTNRQD-RYVQLTD--CGAL 169          
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|695434527|ref|XP_009531443.1| (phosphatidylglycerolphosphate synthase [Phytophthora sojae] >gi|348674195|gb|EGZ14014.1| phosphatidylglycerolphosphate synthase [Phytophthora sojae])

HSP 1 Score: 138.658 bits (348), Expect = 2.994e-34
Identity = 85/181 (46.96%), Postives = 115/181 (63.54%), Query Frame = 0
Query:   91 LFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGIL 271
            LFPLR+S V+ LP P AFY+ LL  I  +  R+++S+LYLG G +E+ALV  + +   ++P L+VQ++LD+SRG RG     SS+T LAPLL   +  P +  L       L R+PQLSG  A+  +P P NE L VSH K    DD  ++L+GANLS DYF+ RQD R+ QL +  CG L
Sbjct:   22 LFPLRSSDVALLPSPSAFYRQLLRNIQHAERRVSISSLYLGTGQLEEALVDALASRLRERPELQVQVVLDYSRGQRGGLT-ASSVTMLAPLL---KEFPDNVEL------FLFRVPQLSGIKAK--LPPPFNETLGVSHAKVYLVDD-TLVLSGANLSDDYFTNRQD-RYVQLTQ--CGGL 186          
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|568017069|gb|ETL91246.1| (hypothetical protein L917_10190 [Phytophthora parasitica])

HSP 1 Score: 135.576 bits (340), Expect = 6.525e-34
Identity = 84/182 (46.15%), Postives = 112/182 (61.54%), Query Frame = 0
Query:   91 LFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGILG 272
            LFPLR+S V+ L  P  FYQ L+  I  +  RI++S+LYLG G +E+ LV  +     ++P L+VQI+LD+SRG RG     SS+T LAPLL   +  P++  L       L R+PQLSG  A+  +P P NE L VSH K    DD  ++L+GANLS+DYF+ RQD R+ QL    CG L 
Sbjct:   29 LFPLRSSDVALLATPTDFYQQLVHNIQHAETRISISSLYLGTGQLERDLVDALATRLKERPQLQVQIVLDYSRGQRGGVTA-SSVTMLAPLL---KQFPNNVEL------FLFRVPQLSGFKAK--LPPPFNETLGVSHAKVYLVDD-TLVLSGANLSNDYFTNRQD-RYVQLTS--CGALA 194          
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|301100085|ref|XP_002899133.1| (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, putative [Phytophthora infestans T30-4] >gi|262104445|gb|EEY62497.1| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 134.42 bits (337), Expect = 9.056e-33
Identity = 85/181 (46.96%), Postives = 112/181 (61.88%), Query Frame = 0
Query:   91 LFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGIL 271
            LFPLR+S V+ L  P  FYQ L+  I  +  RI++S+LYLG G +E  LV  + A   ++P L+VQI+LD+SRG RG     SS+T LAPLL   +  P++  L       L R+PQLSG  A+  +P P NE L VSH K    DD  ++L+GANLS+DYF+ RQD R+ QL    CG L
Sbjct:   23 LFPLRSSDVTLLATPTDFYQQLVHNIQLAETRISISSLYLGTGQLESDLVDALAARLKERPQLQVQIVLDYSRGQRGGVTA-SSVTMLAPLL---KQFPNNVEL------FLFRVPQLSGLKAK--LPPPFNETLGVSHAKVYLVDD-TLVLSGANLSNDYFTNRQD-RYVQLTN--CGAL 187          
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|570982524|gb|ETP42614.1| (hypothetical protein F442_10493 [Phytophthora parasitica P10297])

HSP 1 Score: 133.65 bits (335), Expect = 2.028e-32
Identity = 84/181 (46.41%), Postives = 112/181 (61.88%), Query Frame = 0
Query:   91 LFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGIL 271
            LFPLR+S V+ L  P  FYQ L+  I  +  RI++S+LYLG G +E+ LV  +     ++P L+VQI+LD+SRG RG     SS+T LAPLL   +  P++  L       L R+PQLSG  A+  +P P NE L VSH K    DD  ++L+GANLS+DYF+ RQD R+ QL    CG L
Sbjct:   29 LFPLRSSDVALLATPTDFYQQLVHNIQHAETRISISSLYLGTGQLERDLVDALATRLKERPQLQVQIVLDYSRGQRGGVTA-SSVTMLAPLL---KQFPNNVEL------FLFRVPQLSGLKAK--LPPPFNETLGVSHAKVYLVDD-TLVLSGANLSNDYFTNRQD-RYVQLTS--CGAL 193          
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|566021812|gb|ETI44723.1| (hypothetical protein F443_10600 [Phytophthora parasitica P1569])

HSP 1 Score: 133.65 bits (335), Expect = 2.201e-32
Identity = 84/181 (46.41%), Postives = 112/181 (61.88%), Query Frame = 0
Query:   91 LFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGIL 271
            LFPLR+S V+ L  P  FYQ L+  I  +  RI++S+LYLG G +E+ LV  +     ++P L+VQI+LD+SRG RG     SS+T LAPLL   +  P++  L       L R+PQLSG  A+  +P P NE L VSH K    DD  ++L+GANLS+DYF+ RQD R+ QL    CG L
Sbjct:   29 LFPLRSSDVALLATPTDFYQQLVHNIQHAETRISISSLYLGTGQLERDLVDALATRLKERPQLQVQIVLDYSRGQRGGVTA-SSVTMLAPLL---KQFPNNVEL------FLFRVPQLSGFKAK--LPPPFNETLGVSHAKVYLVDD-TLVLSGANLSNDYFTNRQD-RYVQLTS--CGAL 193          
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|567959122|gb|ETK84701.1| (hypothetical protein L915_10358 [Phytophthora parasitica] >gi|568047483|gb|ETM44562.1| hypothetical protein L914_10219 [Phytophthora parasitica] >gi|570325403|gb|ETO73351.1| hypothetical protein F444_10699 [Phytophthora parasitica P1976] >gi|570949277|gb|ETP14534.1| hypothetical protein F441_10542 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 133.65 bits (335), Expect = 2.461e-32
Identity = 84/181 (46.41%), Postives = 112/181 (61.88%), Query Frame = 0
Query:   91 LFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGIL 271
            LFPLR+S V+ L  P  FYQ L+  I  +  RI++S+LYLG G +E+ LV  +     ++P L+VQI+LD+SRG RG     SS+T LAPLL   +  P++  L       L R+PQLSG  A+  +P P NE L VSH K    DD  ++L+GANLS+DYF+ RQD R+ QL    CG L
Sbjct:   29 LFPLRSSDVALLATPTDFYQQLVHNIQHAETRISISSLYLGTGQLERDLVDALATRLKERPQLQVQIVLDYSRGQRGGVTA-SSVTMLAPLL---KQFPNNVEL------FLFRVPQLSGLKAK--LPPPFNETLGVSHAKVYLVDD-TLVLSGANLSNDYFTNRQD-RYVQLTS--CGAL 193          
BLAST of EWM28909.1 vs. NCBI_GenBank
Match: gi|567987846|gb|ETL38138.1| (hypothetical protein L916_10257 [Phytophthora parasitica])

HSP 1 Score: 132.88 bits (333), Expect = 4.579e-32
Identity = 84/181 (46.41%), Postives = 112/181 (61.88%), Query Frame = 0
Query:   91 LFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRRWHQLLKAWCGIL 271
            LFPLR+S V+ L  P  FYQ L+  I  +  RI++S+LYLG G +E+ LV  +     ++P L+VQI+LD+SRG RG     SS+T LAPLL   +  P++  L       L R+PQLSG  A+  +P P NE L VSH K    DD  ++L+GANLS+DYF+ RQD R+ QL    CG L
Sbjct:   29 LFPLRSSDVALLATPTDFYQQLVHNIQHAETRISISSLYLGTGHLERDLVDALATRLKERPQLQVQIVLDYSRGQRGGVTA-SSVTMLAPLL---KQFPNNVEL------FLFRVPQLSGLKAK--LPPPFNETLGVSHAKVYLVDD-TLVLSGANLSNDYFTNRQD-RYVQLTS--CGAL 193          
The following BLAST results are available for this feature:
BLAST of EWM28909.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111361|gb|EWM28909.1|0.000e+0100.00phosphatidylglycerophosphate synthase 1 [Nannochlo... [more]
gi|553194733|ref|XP_005856023.1|0.000e+099.23CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|1214691011|gb|OWZ06060.1|1.542e-3448.62Phosphatidylglycerolphosphate synthase, partial [P... [more]
gi|695434527|ref|XP_009531443.1|2.994e-3446.96phosphatidylglycerolphosphate synthase [Phytophtho... [more]
gi|568017069|gb|ETL91246.1|6.525e-3446.15hypothetical protein L917_10190 [Phytophthora para... [more]
gi|301100085|ref|XP_002899133.1|9.056e-3346.96CDP-diacylglycerol-glycerol-3-phosphate 3-phosphat... [more]
gi|570982524|gb|ETP42614.1|2.028e-3246.41hypothetical protein F442_10493 [Phytophthora para... [more]
gi|566021812|gb|ETI44723.1|2.201e-3246.41hypothetical protein F443_10600 [Phytophthora para... [more]
gi|567959122|gb|ETK84701.1|2.461e-3246.41hypothetical protein L915_10358 [Phytophthora para... [more]
gi|567987846|gb|ETL38138.1|4.579e-3246.41hypothetical protein L916_10257 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1768rna1768Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications