rna1767, rna1767 (mRNA) Nannochloropsis gaditana

Overview
Namerna1767
Unique Namerna1767
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length541
Alignment locationCM002458.1:76258..77274 +

Link to JBrowse

Properties
Property NameValue
Productfyve finger-containing phosphoinositide
Orig transcript idgnl|cribi|Naga_101156g1.9569.mrna
Orig protein idgnl|cribi|Naga_101156g1.9569
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:76258..77274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101156g1gene1700Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1767rna1767-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28910.1cds1763Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1767 ID=rna1767|Name=rna1767|organism=Nannochloropsis gaditana|type=mRNA|length=541bp
AGGAGAAGCTTCAGGAGCAGCCGGGGGAAGGAGGGAAGAAGGCAGAGAGG
GAAGCGTTGAGCCAGCCGCTGACCCTCGAAACAAAGGATGAGGCAGGGCA
AGTTGCTCCGGTGGGGTTCGGCGCGTCGCCTGGTTTCCCTGCAGGTGTGG
CGGGGGAGAGCACGGAGGACGGGAAAGGAATTCAAGATGCCTGCAAAGAT
TCGGAGAAAGCGCCGGGCAAAGAGTCGAAAGATGCCTGCAAAGATTCGGA
GAAAGCGCCGGGCAAAGAGTCGAAAGATGCGGTCAAAGATTCCCTTTTGA
TGCCTCCGCCCGCTGTCAAGCCGCGCGGAGGGAGCGGGAGCGGCGGCCTG
GATGCCTCCCTCTTAGGGGCCATTCAGAGTCATTCCACCGCCCCATCCTC
CCACGCGACCACGAATTCCCTGAGCAAAAACCTTCTCACCCAGGCCTTGA
ACCGCTTGTTTGGGGGAAAGGAAAATAACGAAGGTTCACCTTACGCTGTG
GACGTGGAAGATGCCCTGGCGTGGGTGGGGCGGTTGGGTAA
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protein sequence of rna1767

>rna1767-protein ID=rna1767-protein|Name=rna1767|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MSSVAPSGREKEEGGKGASASKPQPRQQQRIISRTLLDENLSEFTKGKPL
PLYILDQAYFMRAMINDISFLSYIKIIDYSILIGVDEEQKALVVGIIDYM
RQYDIIKKMERMGKSVGMIAGQAEPTVIQPQPYRARFLGAMEKYFAGIPD
KWTP
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mRNA from alignment at CM002458.1:76258..77274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1767 ID=rna1767|Name=rna1767|organism=Nannochloropsis gaditana|type=mRNA|length=1017bp|location=Sequence derived from alignment at CM002458.1:76258..77274+ (Nannochloropsis gaditana)
ATGTCCTCGGTGGCACCCagcgggcgggagaaggaagagggagggaaggg
cgcgtCGGCCTCCAAACCCCAGCcacggcagcaacagcgtATCATCTCCC
GGACGTTGTTGGATGAAAATTTGTCGGAATTTACGAAAGGTGCgtggagg
ggtggggacgaggaggttttgggggggaaatgggggaaaagtggaggagt
atcggggcggagggagagttggtggggggggcagcaGAGGTGGATGACAA
GGGAAGCAACATATGATGCGGGCGCACGGAGATGTTAGGCGCGACAGGTG
ACACGCACTTTTTTGAAGGTTAAAGTGGAAAATTTCGGGGCATTGGACCG
GATTggggtttcctcctcctcgccggaTTggggctcctccttggtACTCA
TAGACGCTTCCTTTTCAACAACCAAAAGTGTCCGCTCCCCTCTCAAGGCT
CGTTCAcgcccttctcatcctcccccctccccacccacctccgTCCAGGA
aaacccctccccctctacaTACTCGACCAAGCCTACTTCATGCGGGCCAT
GATCAACgacatctccttcctctcgtacATCAAGATCATCGACTACTCCA
TCCTCAtcggcgtggacgaggagcaaAAGGTAGGTAGCGGTGGGGTTCAG
TCACCGTAAAGCGGGGGGCAATATCTCTGTCGGCGCCCCGCCCGtctgag
aaggggggaaggcagggaggaaagttaGGATCGGGAAAGAAGGTCGTCCG
CGCATGCTAGAGCCCAAAGCTTCAAGTTCAAGACTTCTCCCCTCTGACCA
TATCCggacctctccctcacaGGCTCTCGTCGTCGGGATCATAGACTATA
TGCGCCAGTACGACATTATCAAGAAAATGGAACGGATGGGGAAGTCCGTC
GGGATGATCGCCGGGCAGGCCGAGCCCACCGTGATCCAACCGCAGCCCTA
CCGCGCTCGCTTTCTGGGGGCGATGGAGAAGTACTTCGCGGGGATTCCTG
ACAAGTGGACTCCATAG
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Coding sequence (CDS) from alignment at CM002458.1:76258..77274+

>rna1767 ID=rna1767|Name=rna1767|organism=Nannochloropsis gaditana|type=CDS|length=1395bp|location=Sequence derived from alignment at CM002458.1:76258..77274+ (Nannochloropsis gaditana)
ATGTCCTCGGTGGCACCCagcgggcgggagaaggaagagggagggaaggg
cgcgtCGGCCTCCAAACCCCAGCcacggcagcaacagcgtATCATCTCCC
GGACGTTGTTGGATGAAAATTTGTCGGAATTTACGAAAGGAaaacccctc
cccctctacaTACTCGACCAAGCCTACTTCATGCGGGCCATGATCAACga
catctccttcctctcgtacATCAAGATCATCGACTACTCCATCCTCAtcg
gcgtggacgaggagcaaAAGGCTCTCGTCGTCGGGATCATAGACTATATG
CGCCAGTACGACATTATCAAGAAAATGGAACGGATGGGGAAGTCCGTCGG
GATGATCGCCGGGCAGGCCGAGCCCACCGTGATCCAACCGCAGCCCTACC
GCGCTCGCTTTCTGGGGGCGATGGAGAAGTACTTCGCGGGGATTCCTGAC
AAGTGGACTCCATAGATGTCCTCGGTGGCACCCagcgggcgggagaagga
agagggagggaagggcgcgtCGGCCTCCAAACCCCAGCcacggcagcaac
agcgtATCATCTCCCGGACGTTGTTGGATGAAAATTTGTCGGAATTTACG
AAAGGAaaacccctccccctctacaTACTCGACCAAGCCTACTTCATGCG
GGCCATGATCAACgacatctccttcctctcgtacATCAAGATCATCGACT
ACTCCATCCTCAtcggcgtggacgaggagcaaAAGGCTCTCGTCGTCGGG
ATCATAGACTATATGCGCCAGTACGACATTATCAAGAAAATGGAACGGAT
GGGGAAGTCCGTCGGGATGATCGCCGGGCAGGCCGAGCCCACCGTGATCC
AACCGCAGCCCTACCGCGCTCGCTTTCTGGGGGCGATGGAGAAGTACTTC
GCGGGGATTCCTGACAAGTGGACTCCATAGATGTCCTCGGTGGCACCCag
cgggcgggagaaggaagagggagggaagggcgcgtCGGCCTCCAAACCCC
AGCcacggcagcaacagcgtATCATCTCCCGGACGTTGTTGGATGAAAAT
TTGTCGGAATTTACGAAAGGAaaacccctccccctctacaTACTCGACCA
AGCCTACTTCATGCGGGCCATGATCAACgacatctccttcctctcgtacA
TCAAGATCATCGACTACTCCATCCTCAtcggcgtggacgaggagcaaAAG
GCTCTCGTCGTCGGGATCATAGACTATATGCGCCAGTACGACATTATCAA
GAAAATGGAACGGATGGGGAAGTCCGTCGGGATGATCGCCGGGCAGGCCG
AGCCCACCGTGATCCAACCGCAGCCCTACCGCGCTCGCTTTCTGGGGGCG
ATGGAGAAGTACTTCGCGGGGATTCCTGACAAGTGGACTCCATAG
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Synonyms
Publications