rna1760, rna1760 (mRNA) Nannochloropsis gaditana

Overview
Namerna1760
Unique Namerna1760
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length585
Alignment locationCM002458.1:58725..59670 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100441g1.4665.mrna
Orig protein idgnl|cribi|Naga_100441g1.4665
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:58725..59670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100441g1gene1693Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1760rna1760-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28919.1cds1756Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1760 ID=rna1760|Name=rna1760|organism=Nannochloropsis gaditana|type=mRNA|length=585bp
ATGTGTTCGGAAACAAGGGGGAGGGAATGTTTTTTTATATTAAATCTAAT
GACGAAAGCGATCGAAAGGTGCGCATTGAGTGTACATTATTACATGACAT
TGAGTAAAACAGGTCTGAAGGATATTGGACATGAAAATTGTCACTGGTAT
GGCGGACAAGAAGATGTAGTCAGGTTAGTTAGGCGCACAATTGTCTGTGC
TAATCAGTTTTTGTCTTTGAAAGCAAGGGTATGTCTATGTTTTAGCTGTG
CTCCCAGTCTAAAAATATACGAAAGGAAGTGGATAGTAAACGTGCCTGTT
CAAGGAGCTATCTGGCGATGGACGACGCCTACAGCCACTTCCATTTCGAA
AAATGCCGGCAATGTGTGTGTGACTACAAAATACGCCTTTACTGTTAAGG
GAAAAAGGAAGATGATACATAGCTGTGGGATGCTCTTGAACGGCTTCATC
CAAGGTGGGGCTTTTATCCACATCCACCACCACCATCACCACCACGACAA
CAACAGCAACAACAGCAGCAACAACAGCAGCAACAACAAGAACAACAACC
ACTACCACAGCAGCAACAAAATATTCGACAGCTAG
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protein sequence of rna1760

>rna1760-protein ID=rna1760-protein|Name=rna1760|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MKTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAG
AVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTI
PVAATIFLADIISRARGL
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mRNA from alignment at CM002458.1:58725..59670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1760 ID=rna1760|Name=rna1760|organism=Nannochloropsis gaditana|type=mRNA|length=946bp|location=Sequence derived from alignment at CM002458.1:58725..59670- (Nannochloropsis gaditana)
CCTCCCTTTCACTCTTCCTCAAGGGCCTGTGGCTTGGCACCTCGGCAGGG
ATCATGAAAACTGTCCCAAAGTACATGACTGCGGTGGTGGTGAAGGATAA
GGTGGGGAGGGAGGGAGGGGAGAGAAGAGGGAGGGGAAAAGGGATCGGTG
CGAGGCTGATGGTGTGCCATCCCCGTGACACTTCGTGGTCGCATGGGATG
GAAACCTTGTATCTTCACCCCTCTTGTATGTTCTGCCTTGTTCCTCCTTT
CCTTGCAGATGGAAGAATGGCTCGACCCCGTTCCCGAAAATGCCGATAAT
GCCCGATCTCTCCTCGTCCAACGATCGGCCATCAAGGCGGTAACGGCTGG
GCTTGCGGGGGCTGTCCTCACAAATCCGTTGGATGTGGTGCGCAATGAAT
GTTTTAAAAGGGAGCAGAGTCTCGGCCCTACCCTCAGAGGGCTGGTGGAG
GAGGAAGGTGCCCGATTCCTCTGGAGGGGAATGGGTGCGTAGGAGGGAGG
GAAGAAGGGAGTGAGTGAGGGAAAGAAGATGGCGGGAAAAGAGGAGAGGA
GGCGAAGGGAGGGAAGGTGGCGGGAAAAGAGGGTGGGAGGCGAACGGGGG
GTCATATACATCGTTGGGGTGCATTTTTAACGATCTGTCCATTATTTTTG
GGAACGCGTGTGCGTGTGTACCGCGTCGTCCTTCCCTCTTCCTCCTTTCC
CCCCCATTTCTCCCTCCCGTTCTCCCTCCCTCCCTTCCTCCCTGCATCCC
CCCCTCATCATTCCCCTCTTCGCCCCCCTCCCCTCAGGCAAGAATGTGGT
AGCTGTGACAATCCCAGTAGCTGCGACTATTTTTTTGGCCGATATAATCA
GCCGCGCACGGGGCTTGTGAGAGAAGGGAGGGGGGGAGGGAGATAGGAAG
GGAGGAAGAACACAAGTAAAAGAATGTATCTGTATAAGCCTCGAGA
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Coding sequence (CDS) from alignment at CM002458.1:58725..59670-

>rna1760 ID=rna1760|Name=rna1760|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at CM002458.1:58725..59670- (Nannochloropsis gaditana)
GCAAGAATGTGGTAGCTGTGACAATCCCAGTAGCTGCGACTATTTTTTTG
GCCGATATAATCAGCCGCGCACGGGGCTTGTGAATGGAAGAATGGCTCGA
CCCCGTTCCCGAAAATGCCGATAATGCCCGATCTCTCCTCGTCCAACGAT
CGGCCATCAAGGCGGTAACGGCTGGGCTTGCGGGGGCTGTCCTCACAAAT
CCGTTGGATGTGGTGCGCAATGAATGTTTTAAAAGGGAGCAGAGTCTCGG
CCCTACCCTCAGAGGGCTGGTGGAGGAGGAAGGTGCCCGATTCCTCTGGA
GGGGAATGGATGAAAACTGTCCCAAAGTACATGACTGCGGTGGTGGTGAA
GGATAAGGCAAGAATGTGGTAGCTGTGACAATCCCAGTAGCTGCGACTAT
TTTTTTGGCCGATATAATCAGCCGCGCACGGGGCTTGTGAATGGAAGAAT
GGCTCGACCCCGTTCCCGAAAATGCCGATAATGCCCGATCTCTCCTCGTC
CAACGATCGGCCATCAAGGCGGTAACGGCTGGGCTTGCGGGGGCTGTCCT
CACAAATCCGTTGGATGTGGTGCGCAATGAATGTTTTAAAAGGGAGCAGA
GTCTCGGCCCTACCCTCAGAGGGCTGGTGGAGGAGGAAGGTGCCCGATTC
CTCTGGAGGGGAATGGATGAAAACTGTCCCAAAGTACATGACTGCGGTGG
TGGTGAAGGATAAGGCAAGAATGTGGTAGCTGTGACAATCCCAGTAGCTG
CGACTATTTTTTTGGCCGATATAATCAGCCGCGCACGGGGCTTGTGAATG
GAAGAATGGCTCGACCCCGTTCCCGAAAATGCCGATAATGCCCGATCTCT
CCTCGTCCAACGATCGGCCATCAAGGCGGTAACGGCTGGGCTTGCGGGGG
CTGTCCTCACAAATCCGTTGGATGTGGTGCGCAATGAATGTTTTAAAAGG
GAGCAGAGTCTCGGCCCTACCCTCAGAGGGCTGGTGGAGGAGGAAGGTGC
CCGATTCCTCTGGAGGGGAATGGATGAAAACTGTCCCAAAGTACATGACT
GCGGTGGTGGTGAAGGATAAG
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Synonyms
Publications