EWM28919.1, cds1756 (CDS) Nannochloropsis gaditana

Overview
NameEWM28919.1
Unique Namecds1756
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:59570..59617 -
Alignment locationCM002458.1:59187..59412 -
Alignment locationCM002458.1:58801..58883 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28919.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100441g1.4665.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:59570..59617 -
CM002458.1supercontigCM002458.1:59187..59412 -
CM002458.1supercontigCM002458.1:58801..58883 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Homology
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|585111383|gb|EWM28919.1| (hypothetical protein Naga_100441g1 [Nannochloropsis gaditana])

HSP 1 Score: 238.81 bits (608), Expect = 9.226e-80
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
Query:    1 MKTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADIISRARGL 118
            MKTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADIISRARGL
Sbjct:    1 MKTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADIISRARGL 118          
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|553182682|ref|XP_005853766.1| (hypothetical protein NGA_0472300 [Nannochloropsis gaditana CCMP526] >gi|422295294|gb|EKU22593.1| hypothetical protein NGA_0472300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 208.379 bits (529), Expect = 1.005e-65
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0
Query:   16 KMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADIISRARGL 118
            KMEEWLDPVPEN DNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADIISRARGL
Sbjct:  159 KMEEWLDPVPENVDNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADIISRARGL 261          
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|514695593|ref|XP_004995367.1| (hypothetical protein PTSG_03639 [Salpingoeca rosetta] >gi|326437433|gb|EGD83003.1| hypothetical protein PTSG_03639 [Salpingoeca rosetta])

HSP 1 Score: 126.331 bits (316), Expect = 1.622e-33
Identity = 64/114 (56.14%), Postives = 86/114 (75.44%), Query Frame = 0
Query:    1 MKTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADIISR 114
             KTVPKY+TAV VK+ M+EWL PV ++ D  R+ ++ RSA K+V AGLAGA LTNPLDV+RN  F+ E S+  T++ L  ++G RFL++G+GKN+VAV +PV+ TIFL D  SR
Sbjct:  155 FKTVPKYVTAVYVKEMMDEWLAPV-DSTD--RTAVLVRSAKKSVIAGLAGATLTNPLDVIRNTMFQTETSMFQTIKHLHAKKGWRFLYQGLGKNLVAVAVPVSLTIFLTDAFSR 265          
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|551575420|ref|XP_005773432.1| (hypothetical protein EMIHUDRAFT_435784 [Emiliania huxleyi CCMP1516] >gi|485625044|gb|EOD21003.1| hypothetical protein EMIHUDRAFT_435784 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 126.331 bits (316), Expect = 5.616e-33
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 0
Query:    2 KTVPKYMTAVVVKDKMEEWLD--PVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADII 112
            KTVPKY+ A+ VKD M+E L     P  A   RS ++Q SA+K++ AG+AGA LTNPLDV+RNE FK +++LG T R L+  EGA FLWRGM +N+VAV  P+  TIFL D I
Sbjct:  156 KTVPKYVVAIWVKDAMQELLPKPTAPPGAPGHRSQVLQASAVKSIAAGVAGAALTNPLDVIRNEMFKTDEALGETTRRLLRREGASFLWRGMARNLVAVAAPIGMTIFLTDAI 268          
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|167538161|ref|XP_001750746.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163770770|gb|EDQ84451.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 118.627 bits (296), Expect = 3.176e-31
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 0
Query:    2 KTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADIISR 114
            KTVPKY+TAV+VK  M+  L PV +  D    L+  RSA KAV AG AGA+LTNP DV+RN  F+ +  + P +R L + EG RF+WRG+ KN++AV IPV  TIFL DI  +
Sbjct:   91 KTVPKYVTAVLVKQAMDRSLAPVNKEQDRLGWLV--RSAKKAVVAGTAGAILTNPFDVIRNHMFRTDLGMVPAIRSLYQTEGPRFVWRGVAKNMIAVAIPVTVTIFLTDIFEQ 201          
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|219129847|ref|XP_002185091.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403586|gb|EEC43538.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 118.242 bits (295), Expect = 3.391e-30
Identity = 60/110 (54.55%), Postives = 74/110 (67.27%), Query Frame = 0
Query:    1 MKTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLAD 110
            +KTVPKY+TAVVVKD ME+ L P    +       + RSA K+  AG+AGA LTNPLDV+RNE FK    L  T+R L E EG  F++RG+GKN++AV IPV  TIF  D
Sbjct:  168 LKTVPKYITAVVVKDWMEQALPPADPLSKTYHQDRLWRSAAKSAMAGVAGAALTNPLDVIRNEMFKTNLGLAATVRHLQETEGYAFVYRGLGKNLIAVAIPVGCTIFFTD 277          
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|1072238142|gb|OEU22869.1| (mitochondrial carrier [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 114.775 bits (286), Expect = 4.513e-29
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 0
Query:    1 MKTVPKYMTAVVVKDKMEEWLDPVPE----NADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADII 112
            +KTVPKY TAV+VKD ME+ L  + +      D  R   + RSA K+ TAGLAGAVLTNPLDV+RNE FK  +SL  T+R L+ E G+ F  RGM KN++AV IPV  TIF  D++
Sbjct:  118 LKTVPKYCTAVLVKDFMEDRLPQIDDISSPTYDRDR---LCRSAAKSATAGLAGAVLTNPLDVIRNEMFKTNESLPKTIRRLINETGSGFATRGMAKNMIAVAIPVGCTIFFTDVL 230          
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|1072235542|gb|OEU20271.1| (mitochondrial carrier [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 107.842 bits (268), Expect = 1.035e-26
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 0
Query:    1 MKTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADII 112
            +KTVPKY+TA+ VKD  E  L     N+      ++ RSA+K+  AG+AGA LTNPLDV+RNE FK +  L  T R L  E G +F+ RG+GKN++AV +PV  TIF  D++
Sbjct:  112 LKTVPKYVTAIAVKDYAERSLPKPDRNSRTYDRDMLWRSAVKSSMAGIAGAALTNPLDVIRNEQFKTDFGLLKTTRSLWNELGYKFMIRGLGKNMIAVALPVGVTIFCTDML 223          
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|1210516146|dbj|GAX24962.1| (hypothetical protein FisN_2Lh238 [Fistulifera solaris])

HSP 1 Score: 106.686 bits (265), Expect = 7.250e-26
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    1 MKTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLAD 110
            +KTVPKY TAVVVK  ME+WL P  + ++      + RSA K+  AG+AGA LTNPLDV+RNE FK    + PT++ L  E G RFL RG+GKN++AV IPVA TIF  D
Sbjct:  157 LKTVPKYCTAVVVKGFMEDWLPPPTDPSER-----LWRSAYKSAAAGIAGAALTNPLDVIRNEMFKTNLEMTPTVQKLWRELGVRFLGRGLGKNMIAVAIPVACTIFFTD 261          
BLAST of EWM28919.1 vs. NCBI_GenBank
Match: gi|1210528930|dbj|GAX12407.1| (hypothetical protein FisN_2Hh238 [Fistulifera solaris])

HSP 1 Score: 103.219 bits (256), Expect = 1.710e-24
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 0
Query:    1 MKTVPKYMTAVVVKDKMEEWLDPVPENADNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADII 112
            +K+VPKY TAVVVK  ME+WL P  + ++      + RSA K+  AG+AGA LTNPLDV+RNE FK    L  T++ L  E G RFL RG+GKN+VAV IPVA TIF  D +
Sbjct:  157 LKSVPKYCTAVVVKGFMEDWLPPPTDPSER-----LWRSAYKSAAAGIAGAALTNPLDVIRNEMFKTNLELTATVQKLWRELGVRFLARGLGKNMVAVAIPVACTIFFTDAL 263          
The following BLAST results are available for this feature:
BLAST of EWM28919.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111383|gb|EWM28919.1|9.226e-80100.00hypothetical protein Naga_100441g1 [Nannochloropsi... [more]
gi|553182682|ref|XP_005853766.1|1.005e-6599.03hypothetical protein NGA_0472300 [Nannochloropsis ... [more]
gi|514695593|ref|XP_004995367.1|1.622e-3356.14hypothetical protein PTSG_03639 [Salpingoeca roset... [more]
gi|551575420|ref|XP_005773432.1|5.616e-3355.75hypothetical protein EMIHUDRAFT_435784 [Emiliania ... [more]
gi|167538161|ref|XP_001750746.1|3.176e-3153.10hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|219129847|ref|XP_002185091.1|3.391e-3054.55predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072238142|gb|OEU22869.1|4.513e-2954.31mitochondrial carrier [Fragilariopsis cylindrus CC... [more]
gi|1072235542|gb|OEU20271.1|1.035e-2649.11mitochondrial carrier [Fragilariopsis cylindrus CC... [more]
gi|1210516146|dbj|GAX24962.1|7.250e-2655.45hypothetical protein FisN_2Lh238 [Fistulifera sola... [more]
gi|1210528930|dbj|GAX12407.1|1.710e-2454.46hypothetical protein FisN_2Hh238 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1760rna1760Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications