rna1759, rna1759 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1759
Unique Name	rna1759
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2550
Alignment location	CM002458.1:56189..58054 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100441g2.4663.mrna
Orig protein id	gnl\|cribi\|Naga_100441g2.4663
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:56189..58054 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100441g2	gene1692	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1759	rna1759-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28917.1	cds1755	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:56189..58054+
coding sequence from alignment at CM002458.1:56189..58054+

mRNA sequence

>rna1759 ID=rna1759|Name=rna1759|organism=Nannochloropsis gaditana|type=mRNA|length=2550bp
ATGTCTCCTGCGGGAAAAATAGAAAGTTTAGAGGCGTGTGGTAGAGGGAA
GTCACCTGCCACGGCTCCAAAGCATGCTTTGCAGCATGCCACAGGCAAGG
TTCAGGCCGCTGGCGGTACGTCTGTTTTTGCTCCTCCCCCGGCTACGACA
TCCCATGAAAGAGTGCTCGATGGAGCGACCGAAGGCCTCAAACCAGATAT
GGAGGAACGGGAATGGGTGACGTGGCACAAGCCGTGGGCCCGTTTTGATA
ACCCAGAAATGGCATGCGATTTTGAGGCCATGCCGCTGGAAAAGCGGCAC
GATTACCTCATTCAGGGCGCCACCGCGCTGGATCATGCCCTCACACCTCT
GCCTAAAATGAAGGGGCACAGACACACCCTTGAAGCGATGCTTCAACTCG
TCAGGGACGACTTTGAGACCCAGCGGCCCATGTCCGAAGACGCTCGCCTG
GCGTGGAGGAGCGCCTTGGAGCTGACCCGGCGGAACCGGGGTCCGAAGGT
CGACGAGGTTTTCAAGTGCGTGGTGGATTGTCTGGTATTTTTGTTGCACA
CACGACGCGTGCCCGACTTTCCGCGCCAGTACCTGGAGCGTGTAGTGCGA
GGGATGATGAAGGATTACGCCGTGGGCTTGGGGGTGAACAATGTGGCCAG
GCTGGCGGCGGTGTTTGAGGACATGACACCCGCCTTGATTCGGGCGCGGG
CGGCGGCTTTGCGCGCGGGCGCTCAGGGCAAGAAAACCAGCGAGTGTTTC
GAGAGGATCATGGACGTCTTGAGGGAGGAAAAGATGGAGACACAGGCTCG
GGAAGGACAAGTCGACGCAATCACGGAGGGACTGTCGCCTTTGGAAAGGG
AGATCCAGGCCCACGGGCTGGACGTGGACGACGCGCGGGTCGTTGCGTGC
TTTGTGACGGGCGATCCGGCCTTCCTCTCCACCCACACCCTCCACGACTG
GATGCGTATTTGGAAAAAAGTCCGCGAAAAATGTCGGTACCTCCTCCAGG
GTGACTTTGGGAGGAAAAATCAGAGCGTCATCGAAAGCCTGGTTGCCATG
GCGGGCGATAGTAAAAGTGGCCGGAAGCAGAGCGGCACAGCGTCTCTCTC
CAGGAAGCGCAGTGACGAAACCAGTACCAGTGGACAGGATGGCTTTGGAG
GTGTAGAAGAGCAGAGAAAGAGGGCCAAGGGAGGAAAAAAAACGATAAAA
GTGGAAAAAGTGGGGCCTGGGGAGGCCTTGAAGGAGGGTGATAGTCATCC
CGAAGAGAAGCCGACGGCTTATGCGCCCTTCGAAGATTACCAATACTTGC
TCTTGCTGAAAAAACGTTGCCTGGAGTCGCCGAGGGGCGGCGAAGGCGCA
GGAATAATGGCGGGAAACGCATCGGCCACTTTGTCGGCGGCTCCGGTGCC
TGTGCCTGAGGCTTTCCCCTCCCACACCCCAACTCCGCCCCCCTCCACAC
CACCGCCGACGTCCCTGCCCACCCATTCACACGAGAGCCTAGCCCCGAGA
CAGTCGGCAGCCCTGTTGAACACCTTACCTACAGCAGCGTCTTGGCGTCA
GCCTCCGGGCAGGGGAATTACCACGGGGTCCACCGGCATGACTGCGCTGG
CAAGGGGGGCCGCCACCTTGCGCGCCGATGCGGGAGCGGCACCAGCTTCC
TTCCTTTCCGACGTGTCGCGGCATGGGGAGACGACGGCGGGGGGCTCGCT
CTCTACTGACGCCTTGATGCGGCCACCCCACGCCGGAGGGGCAGGAACGG
CCCCGGCCCCCTCTATAAGCACTCTCGCCAAGGTCCGGGCGTCGTCCGCA
GCAGCATCCTCAGGTAGCCCCACACGCAAAGCCGCCACCGGGGCCCCGAA
AGTGCAGCCTCCGCCAGGACCGCCATCCGTGACGACAGAGCCGACGACCG
ACGCCTGGGCCCCGCGGGACTCGCCGGTTCGATCCGTTCGCGCCTTACTG
TCCAAGGGAAAGGCCACTTTGGCACCCACGACGACGGTGACCAGGTCGTT
GCCCGCACACTCCACCATCACAAAGGCCGCAGGGCGCCAGGAATGCCTGC
CGGCGGAAGCAGCTGCAACGGCCACCACGGCGCACATGGTCTCATTCCCA
CCACATGTGACCGCCACCACCACGACAACGGCGACGCCGTCGTTGGGGAC
AGAGGAGAAGGTCGTCACCACCACCAAAGCCACAACAGCATCCGCGAACT
CGAGGGACGCGGGCATTCCGACCCCTCCGTCATGGAATGGGCCGGTGGCG
ACTGCCAGGGCGCCGACTTGGCCTTGCGTGAGGCCTCCGTCGTCTCCCCC
CCGCGTCATGGGATCGATCCCGTCACCGTCCTTACAATCAGCCAGCGTAC
CAAAGCGAGACCTGTCCTTGGGCGCCGCATCCCCCAGCACTGACCCTACC
CCAAGCGTTACTACTACCACAGCCACGAAGACCACGACGGAGACGGTGAA
AAGCCAAACTGCGACGGCTCTCACAGAAATCGTCACCACGGTGACGACCA
TCACCACGACCACTACGACTACCACACCATGTGAAGCATTCAATGCATAA

protein sequence of rna1759

>rna1759-protein ID=rna1759-protein|Name=rna1759|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MCSETRGRECFFILNLMTKAIERCALSVHYYMTLSKTGLKDIGHENCHWY
GGQEDVVRLVRRTIVCANQFLSLKARVCLCFSCAPSLKIYERKWIVNVPV
QGAIWRWTTPTATSISKNAGNVCVTTKYAFTVKGKRKMIHSCGMLLNGFI
QGGAFIHIHHHHHHHDNNSNNSSNNSSNNKNNNHYHSSNKIFDS

mRNA from alignment at CM002458.1:56189..58054+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1759 ID=rna1759|Name=rna1759|organism=Nannochloropsis gaditana|type=mRNA|length=1866bp|location=Sequence derived from alignment at CM002458.1:56189..58054+ (Nannochloropsis gaditana)
atgtgTTCGGaaacaagggggagggaatgttTTTTTATATTAAATCTAAT
GACGAAAGCGATCGAAAGGTGCGCATTGAGTGTACATTGTAAGATGAAAA
TTCAAGAATGGACAAAACATGAAAGTGAAATATAGATTACATGACATTGA
GTAAAACAGGTCTGAAGGATATTGGACATGAAAATTGTCACTGGTATGGC
GGACAAGAAGATGTAGTCAGGTTAGTTAGGCGCACAATTGTCTGTGCTAA
TCAGTTTTTGTCTTTGAAAGCAAGGGTATGTCTATGTTTTAGCTGTGCTC
CCAGTCTAAAAATATACGAAAGGAAGTGGATAGTAAACGTGCCTGTTCAA
GGAGCTATCTGGCGATGGACGACGCCTACAGCCACTTCCATTTCGAAAAA
TGCCGGCAATGTGTGTGTGACTACAAAATACGCCTTTACTGttaagggaa
aaaggaagatgaTACATAGCTGTGGGATGCTCTTGAACGGCTTCATCCAA
GGTGGGGCTTTTATGTAGGCTATTATTTTCCAAGTCAATTGCCATGTATC
CCCCAACGCACCCCCCGGCAGGCGGCGACTACGCTTGCCGCCACTGGCAT
TTCCACACGAGCCtgcatccttttccttccagccTGCTAGGATCATCCGA
TAAAACGGCCTTTGATACATCCTCTTGTTGGAAAGTAAGCTCCATTTTCG
TCAGGCTTCATGGATTTAAAGCTGACTACTTTGTCCTTTTATCCTGTAGG
AGTGAGGGATGGAACGTATTCCAGTTTCCGAGACTCCAAACCCTGCAAAC
TCGACACGGAGCTCCTCAGGCATTCCATGCAAAGCTACTGAGGACTCTTC
ACCTCGTATCGGCCCTCAACGGTACCGGAGCAAGTTTTATTTGGTTTCCT
GCCACCGCGATGAGGCTCCAGCCAAGACGAACGAAGTACGTGTGACCTAT
CAAGGTCAGGTGAAGTGCTACGTGGGCTACGCGAACGCACTGTTTGAAGA
GCGAAAGGCCCGTGCTGTTGCTATTAAAGGCATGGGAAGGGCCATTCACA
AGGCCGTTGCCGTGGCACAGGTCTTAAAGCACCGCATACCCGGTCTGCAC
CAGCGGACAGATATTGATTCATTGCCTTTTAAAGAGATGTGGGCCCctct
ggaggaagggcttgaCCCCGTGGAGTCGACGCGTTACATATCTTCGGTTT
TAATCACACTGTCAAAGGACAGACCCCCCGCAAGTTTGTGTGAAGCTCCG
GGCTACCAGCCTCCCGCGCCACCTTCTGCCCCGCAATTTCCAGGAGGAAT
GGACGAATATGCTCATTTTCcgtggggaagaggcaggagctGGGACGCGA
GCGGTAGCACAAgtggagaggggatgggcatggcagaaaagaaggaaata
GGACCAGGATTCTCGGACTATGAAATGCTCCCTGACATGCAGGCAGCACA
GGCGGCGGCATACGACCGGTGGCTGGCGGAAGTACACTTCCAAGCGGAGC
AGCTCGAACACTTTCATGGAACTCAGCACTTTCCACACCATTATTACTCT
CAGCAGCGACATAGGCCACCATTTGAAGGGCAATCTCAACCTCAGGACTC
GCCGCGTTCACATTCAGCCTTACATCAGCCCCCTTTGTACCACCGCCCCC
ATCACTCGCAACAGCCAGGATATCATCATTTGCATGGGCAGTATCAGCTG
CAAGAGCACTACTATTCTGTTCGAACACAGCAGTGCTTGCAACAACAGCc
acatccaccaccaccatcaccaccacgacaacaacagcaacaacagcagc
aacaacagcagcaacaacaagaACAACAACCACTaccacagcagcaacaa
aATATTCGACAGCTAG

Coding sequence (CDS) from alignment at CM002458.1:56189..58054+

>rna1759 ID=rna1759|Name=rna1759|organism=Nannochloropsis gaditana|type=CDS|length=1755bp|location=Sequence derived from alignment at CM002458.1:56189..58054+ (Nannochloropsis gaditana)
atgtgTTCGGaaacaagggggagggaatgttTTTTTATATTAAATCTAAT
GACGAAAGCGATCGAAAGGTGCGCATTGAGTGTACATTATTACATGACAT
TGAGTAAAACAGGTCTGAAGGATATTGGACATGAAAATTGTCACTGGTAT
GGCGGACAAGAAGATGTAGTCAGGTTAGTTAGGCGCACAATTGTCTGTGC
TAATCAGTTTTTGTCTTTGAAAGCAAGGGTATGTCTATGTTTTAGCTGTG
CTCCCAGTCTAAAAATATACGAAAGGAAGTGGATAGTAAACGTGCCTGTT
CAAGGAGCTATCTGGCGATGGACGACGCCTACAGCCACTTCCATTTCGAA
AAATGCCGGCAATGTGTGTGTGACTACAAAATACGCCTTTACTGttaagg
gaaaaaggaagatgaTACATAGCTGTGGGATGCTCTTGAACGGCTTCATC
CAAGGTGGGGCTTTTATCcacatccaccaccaccatcaccaccacgacaa
caacagcaacaacagcagcaacaacagcagcaacaacaagaACAACAACC
ACTaccacagcagcaacaaaATATTCGACAGCTAGatgtgTTCGGaaaca
agggggagggaatgttTTTTTATATTAAATCTAATGACGAAAGCGATCGA
AAGGTGCGCATTGAGTGTACATTATTACATGACATTGAGTAAAACAGGTC
TGAAGGATATTGGACATGAAAATTGTCACTGGTATGGCGGACAAGAAGAT
GTAGTCAGGTTAGTTAGGCGCACAATTGTCTGTGCTAATCAGTTTTTGTC
TTTGAAAGCAAGGGTATGTCTATGTTTTAGCTGTGCTCCCAGTCTAAAAA
TATACGAAAGGAAGTGGATAGTAAACGTGCCTGTTCAAGGAGCTATCTGG
CGATGGACGACGCCTACAGCCACTTCCATTTCGAAAAATGCCGGCAATGT
GTGTGTGACTACAAAATACGCCTTTACTGttaagggaaaaaggaagatga
TACATAGCTGTGGGATGCTCTTGAACGGCTTCATCCAAGGTGGGGCTTTT
ATCcacatccaccaccaccatcaccaccacgacaacaacagcaacaacag
cagcaacaacagcagcaacaacaagaACAACAACCACTaccacagcagca
acaaaATATTCGACAGCTAGatgtgTTCGGaaacaagggggagggaatgt
tTTTTTATATTAAATCTAATGACGAAAGCGATCGAAAGGTGCGCATTGAG
TGTACATTATTACATGACATTGAGTAAAACAGGTCTGAAGGATATTGGAC
ATGAAAATTGTCACTGGTATGGCGGACAAGAAGATGTAGTCAGGTTAGTT
AGGCGCACAATTGTCTGTGCTAATCAGTTTTTGTCTTTGAAAGCAAGGGT
ATGTCTATGTTTTAGCTGTGCTCCCAGTCTAAAAATATACGAAAGGAAGT
GGATAGTAAACGTGCCTGTTCAAGGAGCTATCTGGCGATGGACGACGCCT
ACAGCCACTTCCATTTCGAAAAATGCCGGCAATGTGTGTGTGACTACAAA
ATACGCCTTTACTGttaagggaaaaaggaagatgaTACATAGCTGTGGGA
TGCTCTTGAACGGCTTCATCCAAGGTGGGGCTTTTATCcacatccaccac
caccatcaccaccacgacaacaacagcaacaacagcagcaacaacagcag
caacaacaagaACAACAACCACTaccacagcagcaacaaaATATTCGACA
GCTAG

Synonyms

Publications