EWM28917.1, cds1755 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28917.1
Unique Name	cds1755
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:56189..56276 +
Alignment location	CM002458.1:56324..56702 +
Alignment location	CM002458.1:57937..58054 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28917.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100441g2.4663.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:56189..56276 +
CM002458.1	supercontig	CM002458.1:56324..56702 +
CM002458.1	supercontig	CM002458.1:57937..58054 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM28917.1 vs. NCBI_GenBank
Match: gi|585111381|gb|EWM28917.1| (hypothetical protein Naga_100441g2 [Nannochloropsis gaditana])

HSP 1 Score: 404.831 bits (1039), Expect = 5.762e-143
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0

Query:    1 MCSETRGRECFFILNLMTKAIERCALSVHYYMTLSKTGLKDIGHENCHWYGGQEDVVRLVRRTIVCANQFLSLKARVCLCFSCAPSLKIYERKWIVNVPVQGAIWRWTTPTATSISKNAGNVCVTTKYAFTVKGKRKMIHSCGMLLNGFIQGGAFIHIHHHHHHHDNNSNNSSNNSSNNKNNNHYHSSNKIFDS 194
            MCSETRGRECFFILNLMTKAIERCALSVHYYMTLSKTGLKDIGHENCHWYGGQEDVVRLVRRTIVCANQFLSLKARVCLCFSCAPSLKIYERKWIVNVPVQGAIWRWTTPTATSISKNAGNVCVTTKYAFTVKGKRKMIHSCGMLLNGFIQGGAFIHIHHHHHHHDNNSNNSSNNSSNNKNNNHYHSSNKIFDS
Sbjct:    1 MCSETRGRECFFILNLMTKAIERCALSVHYYMTLSKTGLKDIGHENCHWYGGQEDVVRLVRRTIVCANQFLSLKARVCLCFSCAPSLKIYERKWIVNVPVQGAIWRWTTPTATSISKNAGNVCVTTKYAFTVKGKRKMIHSCGMLLNGFIQGGAFIHIHHHHHHHDNNSNNSSNNSSNNKNNNHYHSSNKIFDS 194

The following BLAST results are available for this feature:

BLAST of EWM28917.1 vs. NCBI_GenBank

BLAST of EWM28917.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585111381\|gb\|EWM28917.1\|	5.762e-143	100.00	hypothetical protein Naga_100441g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna1759	rna1759	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications