rna1757, rna1757 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1757
Unique Name	rna1757
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1071
Alignment location	CM002458.1:49879..52025 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF3593
Orig transcript id	gnl\|cribi\|Naga_100441g4.4664.mrna
Orig protein id	gnl\|cribi\|Naga_100441g4.4664
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:49879..52025 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100441g4	gene1690	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1757	rna1757-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28918.1	cds1753	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:49879..52025+
coding sequence from alignment at CM002458.1:49879..52025+

mRNA sequence

>rna1757 ID=rna1757|Name=rna1757|organism=Nannochloropsis gaditana|type=mRNA|length=1071bp
GTGGCGCCGTTTCGTGGACGTAGTGGAAAATATGCAAGGGCCGACACCAC
TCAAATCGCCTGCACTATGGAGATGGATTGGTCAGCTTAGTCTATTTTTT
GTTGGAAAGTTGAAGTCAGTTTATTCTATCTCGACTAGGACTGCTTTCTC
AAGATCCTTGCCTTGAGCACAACAGGGGGGGAAATTACAGAGCCATGCAC
GACATCGCCTGCCCGCTACAGGTCTTTCTTTATCCTCCAAGACCGGAAGT
ATAATAGGTTATGTTTGGCGTTGATACAGAGCCTACCCCGTACACTTGAA
CCCTCCGCTGGGCTCTCCCAACCTCCCCCCTCGCCTTCCTGCTAACACTT
CCTCTCCCTCCTTACGGATTTCCAACAGAGACTGTTGCACATGCCCCCTT
TTGCACGGAAAGGTCCGCGTTAAAGTCTTTAAGGCCTCCTGTGTCTCTTC
GACAAATTATAAAGAATATCATTCACATGAAAGCACCCAGATGTAGGCGT
TTTCTTGGCACGGCACGACAAAGTCTCCTTCCAACCCTCGTAGACAGTCT
TCCGGGCTCACTCATGCACACTCAACTCACAGACCTGCCCCTCGAAACAC
TGAAAGAGCGTTTAGTAGCGAATGATGATATCCTCTCCGCTTGACCTGCC
GCTCTCCCCAGCCAACGGTACAAGTACCGCTACCAGCGTCGTCTCAGACG
GCCAGGAGAAAGTGGGATTCACACAGGACGCGATGCAAGACAGCGGTGGG
ACGAAGCACGGGGAAAGGGAGGACAGAGAAGAGGATTGGAGGAGGGACAG
GGAGGACGAGGAAGGGAGGGATGGAGAGGGCCGCTTGCGCCGGGCGGCTT
TGGCGGAGAAAGACTACGCAGAGGACAACGAGGGCAATGGAGGGGTGGAA
GAAAGTACGAGTGAGGTGGCGGAAAGGCAGGAGGCGGTGGGGTCGGAGGA
GGGAGGGAAGGAGGGCGAGGTGGAGGGGGCGGGGGAGGGCCCTCCGGTGC
GGGAGGAAGAGAACGACGGGACCTTCGTCCATCTGTCGAACCTGCGCTTG
AACGTAAGGCGGAAGGAATGA

protein sequence of rna1757

>rna1757-protein ID=rna1757-protein|Name=rna1757|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGP
SRCGPPARKLSPPRPLSWALVPASSILRQHVVPLPASSLSPPPPAAAMPS
LVAITQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIW
PEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAE
SLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDGPGREAVKLF
RKGMRGCRCLVCHSTPPTVEPPLLSRGTNI

mRNA from alignment at CM002458.1:49879..52025+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1757 ID=rna1757|Name=rna1757|organism=Nannochloropsis gaditana|type=mRNA|length=2147bp|location=Sequence derived from alignment at CM002458.1:49879..52025+ (Nannochloropsis gaditana)
ggggaggttgggagagCCCAGCGGAGGGTTCAAGTGTACGGGGTAGGCTC
TGTATCAACGCCAAACATAACCTATTATACTTCCGGTCTTGGAGGATAAA
GAAAGACCTGTAGCGGGCAGGCGATGTCGTGCATGGCTCTGTAATTTCCC
CCCCTGTTGTGCTCAAGGCAAGGATCTTGAGAAAGCAGTCCTAGTCGAGA
TAGAATAAACTGACTTCAACTTTCCAACAAAAAATAGACTAAGCTGACCA
ATCCATCTCCATAGTGCAGGCGATTTGAGTGGTGTCGGCCCTTGCATATT
TTCCACTACGTCCACGAAACGGCGCCACAACGGACCCTTGCCAGGATCGC
ATCTCAGAAACGTTGACGACTCCCCCAGTCGCACAGTAGTCTTTTGTGAA
GAATTATGAGCCCAAGAGGAAGTTTCGTAGTGCAGAGGAGAATCTACCTC
TTAGCGCTTCTTGTTGTTTCCCACatggcggggagaaggaggtgggttTG
TATGAGACGAGTGGGATATGCATAGCGTGGGGACTGTCacctttttttta
aaatcgCATGCACCCTCCCTTAAACTTCACTCATCTTCCACGCCTCACTA
ATCAATGCTCTATAATTTTAAAAAGCAAATGCGTCCATGCTTTTGTGCCT
ATCCACCTCTCGTATGGCCCGGACTTATCGCGTGGTCCCTCTCGGTGCGG
CCCCCCTGCAAGGTAAGTAGGAGCGAGTCGCTACACCGGTCTTGtccgcc
cccgcttcctctctttgaCGGGGGTTTtgctcacttccttcctgtctctG
CATTTTCTTGCATCGTTTGCGCTGTAGAGGCATGCCTGTCCCTGCTCGAC
CCCTTTGCCtacggagaagaaaggaagctgtctcctcctcgcccgcttTC
GTGGGCCTTAGTGCCGGCCTCGTCGATACTGAGACAGCACGTGGTGCCAT
taccagcctcctccctctctccccccccccctgctgcGGCCATGCCTTCC
CTTGTGGCAATCACCCAAGgcacggaggggaagggggacttGTTGGAGGC
AGCAGGCACTTTCACCCTCGACTGGTTGAATAACGTAAATTACGGCGCCG
TGTTCGCCttgtctcttttcccttaCTTGATTTTTCTCAAAAATATTTGG
CCTGAAGACTATCCGATCcccaaggtgggggggggggaagaagagaaaga
gggggagggaaagtaggagggaaagagggagagagggagggaaaaagggc
agGATGCAGCATGCAATGTGCGCAGACAGGATGTCCGAAACTGCTACTGT
TTGAGCATTCGAGGGAAAGAGCGACCAGATCCATCGCCTCGTCTGCCTGG
AGGACGTCGACTGACTTccgcttccccgccccctcttccccctccccaca
gACCATGAAATGGGGTTTCGCCTCCCTGCTCATCTTCGTGGTGTCCACCA
TCATCGGTGGCATTGCTGCCAAGCTCATATACAACGATGTACTGGCAAAT
GTGGACTATATTCATGGAGTGGCCGAGTCCCTGCTCGGTAAGCGGCCGAC
GGGCTTCTAACCCGAGTTTTTTTTAGGGGAATCCCTACTTTTGTATTCGG
CTCCTGACCCGAGTTTTTTTTAGGGGAATCCCTACTTTTGTATTCGAAGG
GCCACTCTGGTCATGGTACCGGAGAGGACTCCTCCATTAGTGCTTGTCCC
GGTCTCTTTTTTTAATAACTCTGCCACTCATGCACCCTACGCACGTCGTA
GCGGCTCCGAGGGGACGAATCCCAGGAccgcgcctccgcctttctgGCAT
CACATCCGTACTTGTTGCGTCCCACGTCTCACATGTCTACTTTGCCTCGC
TCGCTCTTGCAGGGGTCACCAATATTGTCttggccatcgccgccttccgg
gccctggaggccgcgAAGAAAGATCGGAACGGAGAGCGTCCCTCTGTGTG
GACCGAAAACGGGGACTTGGACGGGtaggaggacaagggcgcaAGACGTG
GCACTCATAGGGGGCTGCAGCTCCAGCCCAGGACGAGAAGCGGTGAAACT
GTTCCGGAAAGGCATGCGGGGCTGTCGATGCTTGGTCTGTCACAGTACAC
CACCGACCGTGGAGCCGCCATTGCTTTCACGTGGCACAAATATTTGA

Coding sequence (CDS) from alignment at CM002458.1:49879..52025+

>rna1757 ID=rna1757|Name=rna1757|organism=Nannochloropsis gaditana|type=CDS|length=5058bp|location=Sequence derived from alignment at CM002458.1:49879..52025+ (Nannochloropsis gaditana)
ATGAGCCCAAGAGGAAGTTTCGTAGTGCAGAGGAGAATCTACCTCTTAGC
GCTTCTTGTTGTTTCCCACatggcggggagaaggagCAAATGCGTCCATG
CTTTTGTGCCTATCCACCTCTCGTATGGCCCGGACTTATCGCGTGGTCCC
TCTCGGTGCGGCCCCCCTGCAAGgaagctgtctcctcctcgcccgcttTC
GTGGGCCTTAGTGCCGGCCTCGTCGATACTGAGACAGCACGTGGTGCCAT
taccagcctcctccctctctccccccccccctgctgcGGCCATGCCTTCC
CTTGTGGCAATCACCCAAGgcacggaggggaagggggacttGTTGGAGGC
AGCAGGCACTTTCACCCTCGACTGGTTGAATAACGTAAATTACGGCGCCG
TGTTCGCCttgtctcttttcccttaCTTGATTTTTCTCAAAAATATTTGG
CCTGAAGACTATCCGATCcccaagACCATGAAATGGGGTTTCGCCTCCCT
GCTCATCTTCGTGGTGTCCACCATCATCGGTGGCATTGCTGCCAAGCTCA
TATACAACGATGTACTGGCAAATGTGGACTATATTCATGGAGTGGCCGAG
TCCCTGCTCGGGGTCACCAATATTGTCttggccatcgccgccttccgggc
cctggaggccgcgAAGAAAGATCGGAACGGAGAGCGTCCCTCTGTGTGGA
CCGAAAACGGGGACTTGGACGGCCCAGGACGAGAAGCGGTGAAACTGTTC
CGGAAAGGCATGCGGGGCTGTCGATGCTTGGTCTGTCACAGTACACCACC
GACCGTGGAGCCGCCATTGCTTTCACGTGGCACAAATATTTGAATGAGCC
CAAGAGGAAGTTTCGTAGTGCAGAGGAGAATCTACCTCTTAGCGCTTCTT
GTTGTTTCCCACatggcggggagaaggagCAAATGCGTCCATGCTTTTGT
GCCTATCCACCTCTCGTATGGCCCGGACTTATCGCGTGGTCCCTCTCGGT
GCGGCCCCCCTGCAAGgaagctgtctcctcctcgcccgcttTCGTGGGCC
TTAGTGCCGGCCTCGTCGATACTGAGACAGCACGTGGTGCCATtaccagc
ctcctccctctctccccccccccctgctgcGGCCATGCCTTCCCTTGTGG
CAATCACCCAAGgcacggaggggaagggggacttGTTGGAGGCAGCAGGC
ACTTTCACCCTCGACTGGTTGAATAACGTAAATTACGGCGCCGTGTTCGC
CttgtctcttttcccttaCTTGATTTTTCTCAAAAATATTTGGCCTGAAG
ACTATCCGATCcccaagACCATGAAATGGGGTTTCGCCTCCCTGCTCATC
TTCGTGGTGTCCACCATCATCGGTGGCATTGCTGCCAAGCTCATATACAA
CGATGTACTGGCAAATGTGGACTATATTCATGGAGTGGCCGAGTCCCTGC
TCGGGGTCACCAATATTGTCttggccatcgccgccttccgggccctggag
gccgcgAAGAAAGATCGGAACGGAGAGCGTCCCTCTGTGTGGACCGAAAA
CGGGGACTTGGACGGCCCAGGACGAGAAGCGGTGAAACTGTTCCGGAAAG
GCATGCGGGGCTGTCGATGCTTGGTCTGTCACAGTACACCACCGACCGTG
GAGCCGCCATTGCTTTCACGTGGCACAAATATTTGAATGAGCCCAAGAGG
AAGTTTCGTAGTGCAGAGGAGAATCTACCTCTTAGCGCTTCTTGTTGTTT
CCCACatggcggggagaaggagCAAATGCGTCCATGCTTTTGTGCCTATC
CACCTCTCGTATGGCCCGGACTTATCGCGTGGTCCCTCTCGGTGCGGCCC
CCCTGCAAGgaagctgtctcctcctcgcccgcttTCGTGGGCCTTAGTGC
CGGCCTCGTCGATACTGAGACAGCACGTGGTGCCATtaccagcctcctcc
ctctctccccccccccctgctgcGGCCATGCCTTCCCTTGTGGCAATCAC
CCAAGgcacggaggggaagggggacttGTTGGAGGCAGCAGGCACTTTCA
CCCTCGACTGGTTGAATAACGTAAATTACGGCGCCGTGTTCGCCttgtct
cttttcccttaCTTGATTTTTCTCAAAAATATTTGGCCTGAAGACTATCC
GATCcccaagACCATGAAATGGGGTTTCGCCTCCCTGCTCATCTTCGTGG
TGTCCACCATCATCGGTGGCATTGCTGCCAAGCTCATATACAACGATGTA
CTGGCAAATGTGGACTATATTCATGGAGTGGCCGAGTCCCTGCTCGGGGT
CACCAATATTGTCttggccatcgccgccttccgggccctggaggccgcgA
AGAAAGATCGGAACGGAGAGCGTCCCTCTGTGTGGACCGAAAACGGGGAC
TTGGACGGCCCAGGACGAGAAGCGGTGAAACTGTTCCGGAAAGGCATGCG
GGGCTGTCGATGCTTGGTCTGTCACAGTACACCACCGACCGTGGAGCCGC
CATTGCTTTCACGTGGCACAAATATTTGAATGAGCCCAAGAGGAAGTTTC
GTAGTGCAGAGGAGAATCTACCTCTTAGCGCTTCTTGTTGTTTCCCACat
ggcggggagaaggagCAAATGCGTCCATGCTTTTGTGCCTATCCACCTCT
CGTATGGCCCGGACTTATCGCGTGGTCCCTCTCGGTGCGGCCCCCCTGCA
AGgaagctgtctcctcctcgcccgcttTCGTGGGCCTTAGTGCCGGCCTC
GTCGATACTGAGACAGCACGTGGTGCCATtaccagcctcctccctctctc
cccccccccctgctgcGGCCATGCCTTCCCTTGTGGCAATCACCCAAGgc
acggaggggaagggggacttGTTGGAGGCAGCAGGCACTTTCACCCTCGA
CTGGTTGAATAACGTAAATTACGGCGCCGTGTTCGCCttgtctcttttcc
cttaCTTGATTTTTCTCAAAAATATTTGGCCTGAAGACTATCCGATCccc
aagACCATGAAATGGGGTTTCGCCTCCCTGCTCATCTTCGTGGTGTCCAC
CATCATCGGTGGCATTGCTGCCAAGCTCATATACAACGATGTACTGGCAA
ATGTGGACTATATTCATGGAGTGGCCGAGTCCCTGCTCGGGGTCACCAAT
ATTGTCttggccatcgccgccttccgggccctggaggccgcgAAGAAAGA
TCGGAACGGAGAGCGTCCCTCTGTGTGGACCGAAAACGGGGACTTGGACG
GCCCAGGACGAGAAGCGGTGAAACTGTTCCGGAAAGGCATGCGGGGCTGT
CGATGCTTGGTCTGTCACAGTACACCACCGACCGTGGAGCCGCCATTGCT
TTCACGTGGCACAAATATTTGAATGAGCCCAAGAGGAAGTTTCGTAGTGC
AGAGGAGAATCTACCTCTTAGCGCTTCTTGTTGTTTCCCACatggcgggg
agaaggagCAAATGCGTCCATGCTTTTGTGCCTATCCACCTCTCGTATGG
CCCGGACTTATCGCGTGGTCCCTCTCGGTGCGGCCCCCCTGCAAGgaagc
tgtctcctcctcgcccgcttTCGTGGGCCTTAGTGCCGGCCTCGTCGATA
CTGAGACAGCACGTGGTGCCATtaccagcctcctccctctctcccccccc
ccctgctgcGGCCATGCCTTCCCTTGTGGCAATCACCCAAGgcacggagg
ggaagggggacttGTTGGAGGCAGCAGGCACTTTCACCCTCGACTGGTTG
AATAACGTAAATTACGGCGCCGTGTTCGCCttgtctcttttcccttaCTT
GATTTTTCTCAAAAATATTTGGCCTGAAGACTATCCGATCcccaagACCA
TGAAATGGGGTTTCGCCTCCCTGCTCATCTTCGTGGTGTCCACCATCATC
GGTGGCATTGCTGCCAAGCTCATATACAACGATGTACTGGCAAATGTGGA
CTATATTCATGGAGTGGCCGAGTCCCTGCTCGGGGTCACCAATATTGTCt
tggccatcgccgccttccgggccctggaggccgcgAAGAAAGATCGGAAC
GGAGAGCGTCCCTCTGTGTGGACCGAAAACGGGGACTTGGACGGCCCAGG
ACGAGAAGCGGTGAAACTGTTCCGGAAAGGCATGCGGGGCTGTCGATGCT
TGGTCTGTCACAGTACACCACCGACCGTGGAGCCGCCATTGCTTTCACGT
GGCACAAATATTTGAATGAGCCCAAGAGGAAGTTTCGTAGTGCAGAGGAG
AATCTACCTCTTAGCGCTTCTTGTTGTTTCCCACatggcggggagaagga
gCAAATGCGTCCATGCTTTTGTGCCTATCCACCTCTCGTATGGCCCGGAC
TTATCGCGTGGTCCCTCTCGGTGCGGCCCCCCTGCAAGgaagctgtctcc
tcctcgcccgcttTCGTGGGCCTTAGTGCCGGCCTCGTCGATACTGAGAC
AGCACGTGGTGCCATtaccagcctcctccctctctccccccccccctgct
gcGGCCATGCCTTCCCTTGTGGCAATCACCCAAGgcacggaggggaaggg
ggacttGTTGGAGGCAGCAGGCACTTTCACCCTCGACTGGTTGAATAACG
TAAATTACGGCGCCGTGTTCGCCttgtctcttttcccttaCTTGATTTTT
CTCAAAAATATTTGGCCTGAAGACTATCCGATCcccaagACCATGAAATG
GGGTTTCGCCTCCCTGCTCATCTTCGTGGTGTCCACCATCATCGGTGGCA
TTGCTGCCAAGCTCATATACAACGATGTACTGGCAAATGTGGACTATATT
CATGGAGTGGCCGAGTCCCTGCTCGGGGTCACCAATATTGTCttggccat
cgccgccttccgggccctggaggccgcgAAGAAAGATCGGAACGGAGAGC
GTCCCTCTGTGTGGACCGAAAACGGGGACTTGGACGGCCCAGGACGAGAA
GCGGTGAAACTGTTCCGGAAAGGCATGCGGGGCTGTCGATGCTTGGTCTG
TCACAGTACACCACCGACCGTGGAGCCGCCATTGCTTTCACGTGGCACAA
ATATTTGA

Synonyms

Publications