EWM28918.1, cds1753 (CDS) Nannochloropsis gaditana

Overview
NameEWM28918.1
Unique Namecds1753
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:50284..50369 +
Alignment locationCM002458.1:50504..50590 +
Alignment locationCM002458.1:50752..51052 +
Alignment locationCM002458.1:51280..51415 +
Alignment locationCM002458.1:51741..51852 +
Alignment locationCM002458.1:51905..52025 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28918.1
ProductProtein of unknown function DUF3593
Orig transcript idgnl|cribi|Naga_100441g4.4664.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:50284..50369 +
CM002458.1supercontigCM002458.1:50504..50590 +
CM002458.1supercontigCM002458.1:50752..51052 +
CM002458.1supercontigCM002458.1:51280..51415 +
CM002458.1supercontigCM002458.1:51741..51852 +
CM002458.1supercontigCM002458.1:51905..52025 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021995DUF3593
Homology
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|585111382|gb|EWM28918.1| (Protein of unknown function DUF3593 [Nannochloropsis gaditana])

HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query:    1 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARKLSPPRPLSWALVPASSILRQHVVPLPASSLSPPPPAAAMPSLVAITQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDGPGREAVKLFRKGMRGCRCLVCHSTPPTVEPPLLSRGTNI 280
            MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARKLSPPRPLSWALVPASSILRQHVVPLPASSLSPPPPAAAMPSLVAITQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDGPGREAVKLFRKGMRGCRCLVCHSTPPTVEPPLLSRGTNI
Sbjct:    1 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARKLSPPRPLSWALVPASSILRQHVVPLPASSLSPPPPAAAMPSLVAITQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDGPGREAVKLFRKGMRGCRCLVCHSTPPTVEPPLLSRGTNI 280          
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|553183833|ref|XP_005853976.1| (hypothetical protein NGA_0502100 [Nannochloropsis gaditana CCMP526] >gi|422295085|gb|EKU22384.1| hypothetical protein NGA_0502100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 389.808 bits (1000), Expect = 5.378e-134
Identity = 217/304 (71.38%), Postives = 219/304 (72.04%), Query Frame = 0
Query:    1 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARKL-SPPRPL------------------SWALVPASSILRQHVVPLPASSLSPPPPAAAMPSLVAITQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPK--------------------------------------------TMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDG 241
            MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPAR +  P RPL                  S  LV   +        LP SS    PPAAAMPSLVAI QGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPK                                            TMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDG
Sbjct:    1 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARGMPVPARPLCLRRRKEAVSSSPAFVALSAGLVDTETARGAITSLLPLSS----PPAAAMPSLVAIAQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKVGGGCPKLLLFEHSRERATRSIASSAWRTSTDFRFPAPSSPSPQTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDG 300          
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|299470686|emb|CBN78626.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.1889 bits (204), Expect = 2.755e-16
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0
Query:  134 VFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNG 227
            +F  SLFPYL FL  +  ++   P+   +GFA LL+FVV+TI  GI AK  YN++LANVDY+HG+AES L +TN+ + ++AFR     K+   G
Sbjct:   42 LFQASLFPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGIAESFLTLTNLFI-VSAFRKAVVGKQPAAG 134          
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|518327951|ref|WP_019498158.1| (DUF3593 domain-containing protein [Pseudanabaena sp. PCC 6802])

HSP 1 Score: 80.4925 bits (197), Expect = 1.047e-15
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 0
Query:  133 AVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGER 229
            A+FALSLFPYL FL  I      +PK   WGF   L+FV  TI  GI AKL+Y + LANVD++HG AESLL + NI L +  F+   A+ + R GE+
Sbjct:    6 ALFALSLFPYLAFLWFI-TRSGKMPKLALWGFYGTLVFVAVTIPVGIYAKLVYKESLANVDFLHGGAESLLTIANI-LIVLGFK--NASDRLRKGEK 98          
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|255085106|ref|XP_002504984.1| (predicted protein [Micromonas commoda] >gi|226520253|gb|ACO66242.1| predicted protein [Micromonas commoda])

HSP 1 Score: 84.7297 bits (208), Expect = 5.401e-15
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 0
Query:  132 GAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDG 241
            G +F  SL PYL+FL  +   +  +P    +GF  LL+FV  TI   I AKL+YND+LANVD++HG AESLL +TN+++ I     L   K    G+R  V + +G L G
Sbjct:   92 GNLFGASLLPYLVFLYYLGMPESKMPPRALFGFKFLLVFVFGTIPCAIYAKLVYNDILANVDWLHGPAESLLTITNLLIVIGLREGLRDLKGGDGGKRSKVSSVSGALLG 201          
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|1101230898|gb|OIP78539.1| (hypothetical protein AUK48_01425 [Oscillatoriales cyanobacterium CG2_30_44_21])

HSP 1 Score: 77.7962 bits (190), Expect = 1.086e-14
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 0
Query:  133 AVFALSLFPYLIFLKNIW--PEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALE 219
            A+F LSLFPYL FL   W   +    PK   WGF   L+FV  TI  G+ A++ Y +VLANVD++HG AES L +TNI+L I    AL+
Sbjct:    5 ALFGLSLFPYLAFL---WFATKSQQFPKLGLWGFYGTLVFVAITIPAGLYAQIHYGEVLANVDWLHGSAESFLTMTNILLVIGFKNALK 90          
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|549083875|gb|ERN43102.1| (protein of unknown function (DUF3593) [Rubidibacter lacunae KORDI 51-2])

HSP 1 Score: 75.8702 bits (185), Expect = 5.852e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0
Query:  123 LDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDR 225
            +D LN  N   +FA+SLFPYL FL  +       P+    GF  LL+FV  TI  GI AK+ Y+D LANVD++HG AE  L V+NI +A+   +A+ +AK+ R
Sbjct:    2 MDLLNKQN---LFAISLFPYLGFLWFL-TRSRRFPRLATIGFYVLLLFVFVTIPAGIYAKVAYHDELANVDWLHGSAEVFLSVSNIFIALGFRQAMLSAKETR 100          
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|750372706|ref|WP_040654620.1| (DUF3593 domain-containing protein [Rubidibacter lacunae])

HSP 1 Score: 75.8702 bits (185), Expect = 5.941e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0
Query:  123 LDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDR 225
            +D LN  N   +FA+SLFPYL FL  +       P+    GF  LL+FV  TI  GI AK+ Y+D LANVD++HG AE  L V+NI +A+   +A+ +AK+ R
Sbjct:    1 MDLLNKQN---LFAISLFPYLGFLWFL-TRSRRFPRLATIGFYVLLLFVFVTIPAGIYAKVAYHDELANVDWLHGSAEVFLSVSNIFIALGFRQAMLSAKETR 99          
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|941165668|ref|WP_055074330.1| (hypothetical protein [Pseudanabaena sp. 'Roaring Creek'])

HSP 1 Score: 75.0998 bits (183), Expect = 8.329e-14
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 0
Query:  133 AVFALSLFPYLIFLKNIW--PEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALE 219
            ++F LSLFPYL FL   W   +    PK   WGF   L+FV  TI  GI A+  Y+D+LANVD++HG AES L +TNI+L +    AL+
Sbjct:    5 SLFGLSLFPYLAFL---WFATKSGQFPKLGLWGFYGTLVFVAITIPAGIYAQSQYHDMLANVDWLHGSAESFLTMTNILLVLGFKNALK 90          
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|488870318|ref|WP_002782557.1| (DUF3593 domain-containing protein [Microcystis aeruginosa] >gi|389791917|emb|CCI12316.1| conserved membrane hypothetical protein [Microcystis aeruginosa PCC 9806])

HSP 1 Score: 74.7146 bits (182), Expect = 1.702e-13
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 0
Query:  129 VNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENG 237
            +N  ++FA+SLFPYL FL  +      +P+    GF  LLIFV  TI  GI AK+ Y   LANVD++HG AE  L ++NI++ +   +A+ A K+   GE+ +  +E G
Sbjct:    1 MNKESLFAISLFPYLGFLWFV-TRSGKMPRLALIGFYVLLIFVFITIPAGIYAKIHYGQELANVDWLHGSAEFFLTLSNILVVLGFRQAILAKKQTEKGEQGTGSSEQG 108          
The following BLAST results are available for this feature:
BLAST of EWM28918.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111382|gb|EWM28918.1|0.000e+0100.00Protein of unknown function DUF3593 [Nannochlorops... [more]
gi|553183833|ref|XP_005853976.1|5.378e-13471.38hypothetical protein NGA_0502100 [Nannochloropsis ... [more]
gi|299470686|emb|CBN78626.1|2.755e-1647.87conserved unknown protein [Ectocarpus siliculosus][more]
gi|518327951|ref|WP_019498158.1|1.047e-1550.52DUF3593 domain-containing protein [Pseudanabaena s... [more]
gi|255085106|ref|XP_002504984.1|5.401e-1543.64predicted protein [Micromonas commoda] >gi|2265202... [more]
gi|1101230898|gb|OIP78539.1|1.086e-1449.44hypothetical protein AUK48_01425 [Oscillatoriales ... [more]
gi|549083875|gb|ERN43102.1|5.852e-1445.63protein of unknown function (DUF3593) [Rubidibacte... [more]
gi|750372706|ref|WP_040654620.1|5.941e-1445.63DUF3593 domain-containing protein [Rubidibacter la... [more]
gi|941165668|ref|WP_055074330.1|8.329e-1448.31hypothetical protein [Pseudanabaena sp. 'Roaring C... [more]
gi|488870318|ref|WP_002782557.1|1.702e-1341.28DUF3593 domain-containing protein [Microcystis aer... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1757rna1757Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications