EWM28918.1, cds1753 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|585111382|gb|EWM28918.1| (Protein of unknown function DUF3593 [Nannochloropsis gaditana]) HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0 Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0 Query: 1 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARKLSPPRPLSWALVPASSILRQHVVPLPASSLSPPPPAAAMPSLVAITQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDGPGREAVKLFRKGMRGCRCLVCHSTPPTVEPPLLSRGTNI 280 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARKLSPPRPLSWALVPASSILRQHVVPLPASSLSPPPPAAAMPSLVAITQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDGPGREAVKLFRKGMRGCRCLVCHSTPPTVEPPLLSRGTNI Sbjct: 1 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARKLSPPRPLSWALVPASSILRQHVVPLPASSLSPPPPAAAMPSLVAITQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDGPGREAVKLFRKGMRGCRCLVCHSTPPTVEPPLLSRGTNI 280
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|553183833|ref|XP_005853976.1| (hypothetical protein NGA_0502100 [Nannochloropsis gaditana CCMP526] >gi|422295085|gb|EKU22384.1| hypothetical protein NGA_0502100 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 389.808 bits (1000), Expect = 5.378e-134 Identity = 217/304 (71.38%), Postives = 219/304 (72.04%), Query Frame = 0 Query: 1 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARKL-SPPRPL------------------SWALVPASSILRQHVVPLPASSLSPPPPAAAMPSLVAITQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPK--------------------------------------------TMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDG 241 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPAR + P RPL S LV + LP SS PPAAAMPSLVAI QGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPK TMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDG Sbjct: 1 MSPRGSFVVQRRIYLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARGMPVPARPLCLRRRKEAVSSSPAFVALSAGLVDTETARGAITSLLPLSS----PPAAAMPSLVAIAQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKVGGGCPKLLLFEHSRERATRSIASSAWRTSTDFRFPAPSSPSPQTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDG 300
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|299470686|emb|CBN78626.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 83.1889 bits (204), Expect = 2.755e-16 Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0 Query: 134 VFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNG 227 +F SLFPYL FL + ++ P+ +GFA LL+FVV+TI GI AK YN++LANVDY+HG+AES L +TN+ + ++AFR K+ G Sbjct: 42 LFQASLFPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGIAESFLTLTNLFI-VSAFRKAVVGKQPAAG 134
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|518327951|ref|WP_019498158.1| (DUF3593 domain-containing protein [Pseudanabaena sp. PCC 6802]) HSP 1 Score: 80.4925 bits (197), Expect = 1.047e-15 Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 0 Query: 133 AVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGER 229 A+FALSLFPYL FL I +PK WGF L+FV TI GI AKL+Y + LANVD++HG AESLL + NI L + F+ A+ + R GE+ Sbjct: 6 ALFALSLFPYLAFLWFI-TRSGKMPKLALWGFYGTLVFVAVTIPVGIYAKLVYKESLANVDFLHGGAESLLTIANI-LIVLGFK--NASDRLRKGEK 98
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|255085106|ref|XP_002504984.1| (predicted protein [Micromonas commoda] >gi|226520253|gb|ACO66242.1| predicted protein [Micromonas commoda]) HSP 1 Score: 84.7297 bits (208), Expect = 5.401e-15 Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 0 Query: 132 GAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLDG 241 G +F SL PYL+FL + + +P +GF LL+FV TI I AKL+YND+LANVD++HG AESLL +TN+++ I L K G+R V + +G L G Sbjct: 92 GNLFGASLLPYLVFLYYLGMPESKMPPRALFGFKFLLVFVFGTIPCAIYAKLVYNDILANVDWLHGPAESLLTITNLLIVIGLREGLRDLKGGDGGKRSKVSSVSGALLG 201
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|1101230898|gb|OIP78539.1| (hypothetical protein AUK48_01425 [Oscillatoriales cyanobacterium CG2_30_44_21]) HSP 1 Score: 77.7962 bits (190), Expect = 1.086e-14 Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 0 Query: 133 AVFALSLFPYLIFLKNIW--PEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALE 219 A+F LSLFPYL FL W + PK WGF L+FV TI G+ A++ Y +VLANVD++HG AES L +TNI+L I AL+ Sbjct: 5 ALFGLSLFPYLAFL---WFATKSQQFPKLGLWGFYGTLVFVAITIPAGLYAQIHYGEVLANVDWLHGSAESFLTMTNILLVIGFKNALK 90
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|549083875|gb|ERN43102.1| (protein of unknown function (DUF3593) [Rubidibacter lacunae KORDI 51-2]) HSP 1 Score: 75.8702 bits (185), Expect = 5.852e-14 Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0 Query: 123 LDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDR 225 +D LN N +FA+SLFPYL FL + P+ GF LL+FV TI GI AK+ Y+D LANVD++HG AE L V+NI +A+ +A+ +AK+ R Sbjct: 2 MDLLNKQN---LFAISLFPYLGFLWFL-TRSRRFPRLATIGFYVLLLFVFVTIPAGIYAKVAYHDELANVDWLHGSAEVFLSVSNIFIALGFRQAMLSAKETR 100
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|750372706|ref|WP_040654620.1| (DUF3593 domain-containing protein [Rubidibacter lacunae]) HSP 1 Score: 75.8702 bits (185), Expect = 5.941e-14 Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0 Query: 123 LDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDR 225 +D LN N +FA+SLFPYL FL + P+ GF LL+FV TI GI AK+ Y+D LANVD++HG AE L V+NI +A+ +A+ +AK+ R Sbjct: 1 MDLLNKQN---LFAISLFPYLGFLWFL-TRSRRFPRLATIGFYVLLLFVFVTIPAGIYAKVAYHDELANVDWLHGSAEVFLSVSNIFIALGFRQAMLSAKETR 99
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|941165668|ref|WP_055074330.1| (hypothetical protein [Pseudanabaena sp. 'Roaring Creek']) HSP 1 Score: 75.0998 bits (183), Expect = 8.329e-14 Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 0 Query: 133 AVFALSLFPYLIFLKNIW--PEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALE 219 ++F LSLFPYL FL W + PK WGF L+FV TI GI A+ Y+D+LANVD++HG AES L +TNI+L + AL+ Sbjct: 5 SLFGLSLFPYLAFL---WFATKSGQFPKLGLWGFYGTLVFVAITIPAGIYAQSQYHDMLANVDWLHGSAESFLTMTNILLVLGFKNALK 90
BLAST of EWM28918.1 vs. NCBI_GenBank
Match: gi|488870318|ref|WP_002782557.1| (DUF3593 domain-containing protein [Microcystis aeruginosa] >gi|389791917|emb|CCI12316.1| conserved membrane hypothetical protein [Microcystis aeruginosa PCC 9806]) HSP 1 Score: 74.7146 bits (182), Expect = 1.702e-13 Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 0 Query: 129 VNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENG 237 +N ++FA+SLFPYL FL + +P+ GF LLIFV TI GI AK+ Y LANVD++HG AE L ++NI++ + +A+ A K+ GE+ + +E G Sbjct: 1 MNKESLFAISLFPYLGFLWFV-TRSGKMPRLALIGFYVLLIFVFITIPAGIYAKIHYGQELANVDWLHGSAEFFLTLSNILVVLGFRQAILAKKQTEKGEQGTGSSEQG 108 The following BLAST results are available for this feature:
BLAST of EWM28918.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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