rna1755, rna1755 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1755
Unique Name	rna1755
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1420
Alignment location	CM002458.1:45580..47353 +

Link to JBrowse

Properties


Property Name	Value
Product	eribonuclease p
Orig transcript id	gnl\|cribi\|Naga_100142g1.2504.mrna
Orig protein id	gnl\|cribi\|Naga_100142g1.2504
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:45580..47353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100142g1	gene1688	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1755	rna1755-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28923.1	cds1751	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:45580..47353+
coding sequence from alignment at CM002458.1:45580..47353+

mRNA sequence

>rna1755 ID=rna1755|Name=rna1755|organism=Nannochloropsis gaditana|type=mRNA|length=1420bp
TGGCCGTCATCGAGCAAATTTACACGCTCTACAGTGAGTTGGTCGCTGGC
AAAAGGTTATATTGTCGGTGGGAGGGCACTGATATACGCTAGTAGCTCAC
GATTACGTTTGTGTCCCTTTCCGCAGGGCTTGGTCCGTGACAAGATTACA
GCCACACCGCCATACCACCGTCAATCATGCTCTCTTGTCTTGCTTCTCGT
ACGCTTCTAACGGGGCACATCAGCAAGATCCCTGAAAGGCCATTTCACAT
GATTTTAGTGGCTACGAGAAAGGCTTTTAAAAATATTATTGGGGAGGATA
GCGGCAGAATATTTATGTCGGATTTGGCACGGGCTACGGCTACTTGCAGA
CGCGTGTCTTCTGTTTCTATTCATCAGCATATATGCCAACGACCGTATAA
GCCGCAGCAGACGTATTTGCATATCCCTATGCGCAAATTTTCATCGGCCC
CTCCCTCTCCCGCTGAAGTTTTGTCGGTGAAGAAAGAGAATGGAGGAGAC
TTTGCTGGACAGCCACAGCGCACCTTGTTGACGAAGCTTCAGGAAGATGG
GGCCTCTCCTCGGGTACTGTGGGATGCCTTACAAGAGAAATGCAAGGGCC
AGAAACTCCCTCGCCGACAAGACCTGCACGCACTGTTCCTTTCCGCCTCC
AGGAACAGCTCCCCCGAGGCCAAAGAGAAGGACAAAGCACTCCTACTATC
AGCAGTGGACCTTTTCCTATATAAAAACGTCGAGTTCAGGGAAGCCTCTG
CCTCCCTCTTCCTTCGGGCCATGCTGCGCTTGGACGGATTGGGCGAAGCG
GTCGACGCCTTGCTGGCGCGGGAAAAGAGACTGGGGCTGTGGGCGCAGCG
GAAAATGTTGCACATGGCATTGCATAGGCTGGGCGTGGCCAAGGACACAG
AGCGACTCTTGAAGCTTTTTGATGCCATGGAGCCTTTCATGAATGTGAAT
CGCAGTGCCCGAACGTACCATCTGGTCATACGGGGTCTTGTCAACGCCGG
ACAAATAAAGAAAGCGTCGGAAATTGCAGGGCAAGCAAACATTGTTTTGG
CGGACAGTACACAAGAATTGCTTAAAAATGCCATGATAGCAGAAGCAGCT
GAGCAAAAAAAAGGAGTGGAGATGGAAGAGGGGAAAGACACAGACAAGGA
AGAGGGCCAAAAAATTGACTAACACTATTTTTTAAGGGATGGTTTGAATG
TATGTTTTTGGGGACACTTGTAAGCCCAGAAATAACCACTAGCCCCAAAA
TTCACTAATGTACATTATTATAAGATAGAGAACGAGGTAAGGCTAGACTA
TTCCTTTTCGACGCAGTGTCGAATGACAGGCTGGGCAGCAAGGCGCAAGG
CGGCGACACTAGGGGAGGTTAACGGGGAAAGTGCCATAAAAGAAGAAAGT
ACTCGACGCCGCGTTTCATC

protein sequence of rna1755

>rna1755-protein ID=rna1755-protein|Name=rna1755|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MRLLHFLSFVSLSSAFLLPSLPSSSSPLSKRGRALASSASEELSRKEKSK
EQVRSLLKGLGELDDEDGPSESGSSKRKEKREGVDAARRALADKDKMKLE
PESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRI
SVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSL
PNFRDVYNYIRSQLDDDAREQTPALPEPK

mRNA from alignment at CM002458.1:45580..47353+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1755 ID=rna1755|Name=rna1755|organism=Nannochloropsis gaditana|type=mRNA|length=1774bp|location=Sequence derived from alignment at CM002458.1:45580..47353+ (Nannochloropsis gaditana)
TCCAGGAAATTATGCGTCTCCTacatttcctctctttcgtcTCTCTTTCG
agtgcctttcttcttccttccctcccctcctcttcctccccgctgtcAAA
ACGGGGCCGGGCTCTGGCGTCTTCTGCTTCCGAAGAACTCTctcgaaagg
aaaaaagcaagGAGCAAGTCCGTTCGCTTTTGAAAGGATTGGGTGAATTA
GACGATGAAGACGGCCCCAGCGAAAGCGGAAGCAGCAAACGCAAGGTAAG
AGGATTTTATCGGGCTGACGTGGGCGAGCGTACAGGTGTGGGTTACCTGT
GTTCGAGCGACTCTCGAGCAGATTTCACTTTTCATGGGCCATGCTTCTCT
CTTATTGATGTATGCATCATCGATATGACATAATGTTAATGCAACGATCT
TGCCATTTCATGATGGCCCAGGAAAAACGAGAGGGAGTGGACGCCGCCAG
GCGGGCATTAGCTGACAAGGATAAGATGAAATTGGAGCCGGAATCCGTCT
TCTTCGAGGGAGCACCGCATTGGAGTGAGGTAAGAAATGTCTCCATAGAG
AGTTGAAAAACCACAAGCGGAAAGCCTACGATAGTACAGCATGGCGGCGC
ACCCACGGCTCTCAGCGCCCGAGGCGTCGATCGGTTGCCCCCTGCCCTGT
CGACTCTAAACCCCCACCGTCCCTCTTTACCTTAGGTGGTAGTCCCTGCC
ATCTCCATCCTCACCGTCATCGGCATCATtcccttcgcgtcctccgTGGC
GCGACAGATTtgggtgaggaaggaagggtgggagcggagagtgagaggga
ggaagtgactTCTCGGGTGGGGCCCGGGGCGTCACCGCGACCCCTCCTTG
CACTCGTCATCTCTCCCCACActcatcgccttcctcttaTTGACTATTAT
GTACGGGTATAAGGTCAAATATAAGATCACCTCGCGGCGAATTTCTGTGA
CCAGCGGAGTGGGTGGGAAGGACTTGACTGAGgtaagggaagggagggag
gtagacaAGGAAGTCAAGAGCGTGCAAAAAACATACCATTCACGAGTGCG
ACTGTATGCTTAAACAAAAGGAATATCATTCTCGATAGTAGGCATCTCAC
TGAtctgctcttcctttctcccgcccccccctccctctctctccccccct
cccttcttcccttacTGCCTAGGTCATCTACGCGGACATCGAACGCATCA
ACTACGTCTTTCGCGCCTTCGGAACCACAGGTGACAtggtcctcttcctc
cgtgatGGCGCCAAGCTGGAAATTCggtacgccctccctccctccttcct
tccctccctccttccctccttccctccctccttcccaccatcCGCTCGTC
CGTGTTCTTGTTCCGGgctgcttccccctcccaccacctctccTCTACCA
TCTTCAGGACGTCACTACGTGCTTCGTGCCCCTCACCTGCCTCTCCAttc
cctgtctcccaccctccctccctccctccctccctccctccctccctgtc
tccctccctccctccctctggcaGCTCCCTTCCCAATTTCCGGGATGTGT
ACAACTACATCCGCAGTCAGCTGGACGACGACGCCCGCGAGCAGACCCCT
GCCTTGCCGGAGCCGAAataaggggggagggcacgggggaggggagggag
ggagggagggagggagggagggagggagggagggagggaagcatggCCCA
TGTTGGGACGCTGGTGATTCTCGGGGTACAGAGGACGTAACATAAAGAAA
ATAAATtctgccaccgcctccttc

Coding sequence (CDS) from alignment at CM002458.1:45580..47353+

>rna1755 ID=rna1755|Name=rna1755|organism=Nannochloropsis gaditana|type=CDS|length=4140bp|location=Sequence derived from alignment at CM002458.1:45580..47353+ (Nannochloropsis gaditana)
ATGCGTCTCCTacatttcctctctttcgtcTCTCTTTCGagtgcctttct
tcttccttccctcccctcctcttcctccccgctgtcAAAACGGGGCCGGG
CTCTGGCGTCTTCTGCTTCCGAAGAACTCTctcgaaaggaaaaaagcaag
GAGCAAGTCCGTTCGCTTTTGAAAGGATTGGGTGAATTAGACGATGAAGA
CGGCCCCAGCGAAAGCGGAAGCAGCAAACGCAAGGAAAAACGAGAGGGAG
TGGACGCCGCCAGGCGGGCATTAGCTGACAAGGATAAGATGAAATTGGAG
CCGGAATCCGTCTTCTTCGAGGGAGCACCGCATTGGAGTGAGGTGGTAGT
CCCTGCCATCTCCATCCTCACCGTCATCGGCATCATtcccttcgcgtcct
ccgTGGCGCGACAGATTtggGTCAAATATAAGATCACCTCGCGGCGAATT
TCTGTGACCAGCGGAGTGGGTGGGAAGGACTTGACTGAGGTCATCTACGC
GGACATCGAACGCATCAACTACGTCTTTCGCGCCTTCGGAACCACAGGTG
ACAtggtcctcttcctccgtgatGGCGCCAAGCTGGAAATTCgCTCCCTT
CCCAATTTCCGGGATGTGTACAACTACATCCGCAGTCAGCTGGACGACGA
CGCCCGCGAGCAGACCCCTGCCTTGCCGGAGCCGAAataaATGCGTCTCC
TacatttcctctctttcgtcTCTCTTTCGagtgcctttcttcttccttcc
ctcccctcctcttcctccccgctgtcAAAACGGGGCCGGGCTCTGGCGTC
TTCTGCTTCCGAAGAACTCTctcgaaaggaaaaaagcaagGAGCAAGTCC
GTTCGCTTTTGAAAGGATTGGGTGAATTAGACGATGAAGACGGCCCCAGC
GAAAGCGGAAGCAGCAAACGCAAGGAAAAACGAGAGGGAGTGGACGCCGC
CAGGCGGGCATTAGCTGACAAGGATAAGATGAAATTGGAGCCGGAATCCG
TCTTCTTCGAGGGAGCACCGCATTGGAGTGAGGTGGTAGTCCCTGCCATC
TCCATCCTCACCGTCATCGGCATCATtcccttcgcgtcctccgTGGCGCG
ACAGATTtggGTCAAATATAAGATCACCTCGCGGCGAATTTCTGTGACCA
GCGGAGTGGGTGGGAAGGACTTGACTGAGGTCATCTACGCGGACATCGAA
CGCATCAACTACGTCTTTCGCGCCTTCGGAACCACAGGTGACAtggtcct
cttcctccgtgatGGCGCCAAGCTGGAAATTCgCTCCCTTCCCAATTTCC
GGGATGTGTACAACTACATCCGCAGTCAGCTGGACGACGACGCCCGCGAG
CAGACCCCTGCCTTGCCGGAGCCGAAataaATGCGTCTCCTacatttcct
ctctttcgtcTCTCTTTCGagtgcctttcttcttccttccctcccctcct
cttcctccccgctgtcAAAACGGGGCCGGGCTCTGGCGTCTTCTGCTTCC
GAAGAACTCTctcgaaaggaaaaaagcaagGAGCAAGTCCGTTCGCTTTT
GAAAGGATTGGGTGAATTAGACGATGAAGACGGCCCCAGCGAAAGCGGAA
GCAGCAAACGCAAGGAAAAACGAGAGGGAGTGGACGCCGCCAGGCGGGCA
TTAGCTGACAAGGATAAGATGAAATTGGAGCCGGAATCCGTCTTCTTCGA
GGGAGCACCGCATTGGAGTGAGGTGGTAGTCCCTGCCATCTCCATCCTCA
CCGTCATCGGCATCATtcccttcgcgtcctccgTGGCGCGACAGATTtgg
GTCAAATATAAGATCACCTCGCGGCGAATTTCTGTGACCAGCGGAGTGGG
TGGGAAGGACTTGACTGAGGTCATCTACGCGGACATCGAACGCATCAACT
ACGTCTTTCGCGCCTTCGGAACCACAGGTGACAtggtcctcttcctccgt
gatGGCGCCAAGCTGGAAATTCgCTCCCTTCCCAATTTCCGGGATGTGTA
CAACTACATCCGCAGTCAGCTGGACGACGACGCCCGCGAGCAGACCCCTG
CCTTGCCGGAGCCGAAataaATGCGTCTCCTacatttcctctctttcgtc
TCTCTTTCGagtgcctttcttcttccttccctcccctcctcttcctcccc
gctgtcAAAACGGGGCCGGGCTCTGGCGTCTTCTGCTTCCGAAGAACTCT
ctcgaaaggaaaaaagcaagGAGCAAGTCCGTTCGCTTTTGAAAGGATTG
GGTGAATTAGACGATGAAGACGGCCCCAGCGAAAGCGGAAGCAGCAAACG
CAAGGAAAAACGAGAGGGAGTGGACGCCGCCAGGCGGGCATTAGCTGACA
AGGATAAGATGAAATTGGAGCCGGAATCCGTCTTCTTCGAGGGAGCACCG
CATTGGAGTGAGGTGGTAGTCCCTGCCATCTCCATCCTCACCGTCATCGG
CATCATtcccttcgcgtcctccgTGGCGCGACAGATTtggGTCAAATATA
AGATCACCTCGCGGCGAATTTCTGTGACCAGCGGAGTGGGTGGGAAGGAC
TTGACTGAGGTCATCTACGCGGACATCGAACGCATCAACTACGTCTTTCG
CGCCTTCGGAACCACAGGTGACAtggtcctcttcctccgtgatGGCGCCA
AGCTGGAAATTCgCTCCCTTCCCAATTTCCGGGATGTGTACAACTACATC
CGCAGTCAGCTGGACGACGACGCCCGCGAGCAGACCCCTGCCTTGCCGGA
GCCGAAataaATGCGTCTCCTacatttcctctctttcgtcTCTCTTTCGa
gtgcctttcttcttccttccctcccctcctcttcctccccgctgtcAAAA
CGGGGCCGGGCTCTGGCGTCTTCTGCTTCCGAAGAACTCTctcgaaagga
aaaaagcaagGAGCAAGTCCGTTCGCTTTTGAAAGGATTGGGTGAATTAG
ACGATGAAGACGGCCCCAGCGAAAGCGGAAGCAGCAAACGCAAGGAAAAA
CGAGAGGGAGTGGACGCCGCCAGGCGGGCATTAGCTGACAAGGATAAGAT
GAAATTGGAGCCGGAATCCGTCTTCTTCGAGGGAGCACCGCATTGGAGTG
AGGTGGTAGTCCCTGCCATCTCCATCCTCACCGTCATCGGCATCATtccc
ttcgcgtcctccgTGGCGCGACAGATTtggGTCAAATATAAGATCACCTC
GCGGCGAATTTCTGTGACCAGCGGAGTGGGTGGGAAGGACTTGACTGAGG
TCATCTACGCGGACATCGAACGCATCAACTACGTCTTTCGCGCCTTCGGA
ACCACAGGTGACAtggtcctcttcctccgtgatGGCGCCAAGCTGGAAAT
TCgCTCCCTTCCCAATTTCCGGGATGTGTACAACTACATCCGCAGTCAGC
TGGACGACGACGCCCGCGAGCAGACCCCTGCCTTGCCGGAGCCGAAataa
ATGCGTCTCCTacatttcctctctttcgtcTCTCTTTCGagtgcctttct
tcttccttccctcccctcctcttcctccccgctgtcAAAACGGGGCCGGG
CTCTGGCGTCTTCTGCTTCCGAAGAACTCTctcgaaaggaaaaaagcaag
GAGCAAGTCCGTTCGCTTTTGAAAGGATTGGGTGAATTAGACGATGAAGA
CGGCCCCAGCGAAAGCGGAAGCAGCAAACGCAAGGAAAAACGAGAGGGAG
TGGACGCCGCCAGGCGGGCATTAGCTGACAAGGATAAGATGAAATTGGAG
CCGGAATCCGTCTTCTTCGAGGGAGCACCGCATTGGAGTGAGGTGGTAGT
CCCTGCCATCTCCATCCTCACCGTCATCGGCATCATtcccttcgcgtcct
ccgTGGCGCGACAGATTtggGTCAAATATAAGATCACCTCGCGGCGAATT
TCTGTGACCAGCGGAGTGGGTGGGAAGGACTTGACTGAGGTCATCTACGC
GGACATCGAACGCATCAACTACGTCTTTCGCGCCTTCGGAACCACAGGTG
ACAtggtcctcttcctccgtgatGGCGCCAAGCTGGAAATTCgCTCCCTT
CCCAATTTCCGGGATGTGTACAACTACATCCGCAGTCAGCTGGACGACGA
CGCCCGCGAGCAGACCCCTGCCTTGCCGGAGCCGAAataa

Synonyms

Publications