EWM28923.1, cds1751 (CDS) Nannochloropsis gaditana

Overview
NameEWM28923.1
Unique Namecds1751
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:45591..45824 +
Alignment locationCM002458.1:46001..46108 +
Alignment locationCM002458.1:46265..46342 +
Alignment locationCM002458.1:46493..46561 +
Alignment locationCM002458.1:46752..46855 +
Alignment locationCM002458.1:47104..47200 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28923.1
Producteribonuclease p
Orig transcript idgnl|cribi|Naga_100142g1.2504.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:45591..45824 +
CM002458.1supercontigCM002458.1:46001..46108 +
CM002458.1supercontigCM002458.1:46265..46342 +
CM002458.1supercontigCM002458.1:46493..46561 +
CM002458.1supercontigCM002458.1:46752..46855 +
CM002458.1supercontigCM002458.1:47104..47200 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005182DUF304
Homology
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|585111389|gb|EWM28923.1| (eribonuclease p [Nannochloropsis gaditana])

HSP 1 Score: 457.218 bits (1175), Expect = 1.621e-162
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
Query:    1 MRLLHFLSFVSLSSAFLLPSLPSSSSPLSKRGRALASSASEELSRKEKSKEQVRSLLKGLGELDDEDGPSESGSSKRKEKREGVDAARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPEPK 229
            MRLLHFLSFVSLSSAFLLPSLPSSSSPLSKRGRALASSASEELSRKEKSKEQVRSLLKGLGELDDEDGPSESGSSKRKEKREGVDAARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPEPK
Sbjct:    1 MRLLHFLSFVSLSSAFLLPSLPSSSSPLSKRGRALASSASEELSRKEKSKEQVRSLLKGLGELDDEDGPSESGSSKRKEKREGVDAARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPEPK 229          
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|553184079|ref|XP_005854023.1| (ribonuclease p [Nannochloropsis gaditana CCMP526] >gi|422295034|gb|EKU22333.1| ribonuclease p [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.424 bits (607), Expect = 1.516e-77
Identity = 120/143 (83.92%), Postives = 120/143 (83.92%), Query Frame = 0
Query:   87 ARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPEPK 229
            ARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWV                       IYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPEPK
Sbjct:   13 ARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWV-----------------------IYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPEPK 132          
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|298711364|emb|CBJ32509.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 164.466 bits (415), Expect = 5.539e-47
Identity = 78/131 (59.54%), Postives = 98/131 (74.81%), Query Frame = 0
Query:   95 DKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPAL 225
            +K+KLE E  FFEG P  SEVV PA+SILTVIGI+PF++++ARQ WVKY +TSRRI + SG  GKD TEV+Y DI  + YV+R FG  GD+VL LRDG+KLEIRSLP+F   YNYIR +     +E++  L
Sbjct:  106 EKVKLEAEVTFFEGGPDPSEVVAPAVSILTVIGIVPFSAALARQAWVKYTLTSRRIKIVSGWNGKDTTEVVYPDIVDMVYVWRFFGRCGDLVLTLRDGSKLEIRSLPDFERNYNYIRERTSASCQEKSAVL 236          
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|1189380246|gb|OSX68632.1| (hypothetical protein BU14_2468s0001 [Porphyra umbilicalis])

HSP 1 Score: 159.844 bits (403), Expect = 5.752e-46
Identity = 71/129 (55.04%), Postives = 96/129 (74.42%), Query Frame = 0
Query:   99 LEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPE 227
            LEPE VF+EG P W EVV+P ++ILTV+G+IP+A +VARQ+WVKYK T+RRI+V SG  G D TEV+Y DIE + +V R  G   DMVL L+DGA+LE+RSL  F ++Y Y+  Q+D+D R+ +   P+
Sbjct:   37 LEPEEVFYEGKPSWVEVVIPTVAILTVVGVIPWAGAVARQLWVKYKFTNRRIAVDSGFRGNDHTEVVYRDIEEVRFVRRFGGAAADMVLLLKDGARLELRSLDRFDELYEYVMGQVDEDTRQASNYTPK 165          
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|676399111|ref|XP_009042833.1| (hypothetical protein AURANDRAFT_35230, partial [Aureococcus anophagefferens] >gi|323446218|gb|EGB02468.1| hypothetical protein AURANDRAFT_35230, partial [Aureococcus anophagefferens])

HSP 1 Score: 155.606 bits (392), Expect = 5.952e-45
Identity = 68/124 (54.84%), Postives = 95/124 (76.61%), Query Frame = 0
Query:  102 ESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPAL 225
            E++FFEG P  +E+V+PAISI+T+IG++PF ++ ARQ+WVKYKITSRRISV SG+GG D TE+IY+DI  + YV+R     GDMV+ LRDGAKLE+R +P F+D+Y YI S   ++ +    ++
Sbjct:    1 ETLFFEGPPSITELVLPAISIITIIGVVPFLAAAARQVWVKYKITSRRISVQSGLGGNDFTEIIYSDIVDLKYVYRGSKEVGDMVIELRDGAKLEMRHVPKFQDIYKYIYSLCSEECQATAASM 124          
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|676381643|ref|XP_009034100.1| (hypothetical protein AURANDRAFT_16832, partial [Aureococcus anophagefferens] >gi|323455896|gb|EGB11764.1| hypothetical protein AURANDRAFT_16832, partial [Aureococcus anophagefferens])

HSP 1 Score: 150.599 bits (379), Expect = 3.136e-43
Identity = 67/109 (61.47%), Postives = 89/109 (81.65%), Query Frame = 0
Query:  102 ESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYI 210
            E++FFEG P  +E+V+PAISI+T+IG++PF ++ ARQ+WVKYKITSRRISV SG+GG D TE+IY+DI  + YV+R     GDMV+ LRDGAKLE+R +P F+D+Y YI
Sbjct:    1 ETLFFEGPPSITELVLPAISIITIIGVVPFLAAAARQVWVKYKITSRRISVQSGLGGNDFTEIIYSDIVDLKYVYRGSKEVGDMVIELRDGAKLEMRHVPKFQDIYKYI 109          
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|873240643|emb|CEL93264.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 153.295 bits (386), Expect = 3.147e-42
Identity = 74/136 (54.41%), Postives = 99/136 (72.79%), Query Frame = 0
Query:   79 EKREGVDAARRALADKDKM-KLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGT--TGDMVLFLRDGAKLEIRSLPNFRDVYNYIR 211
            ++R  V   R+   D++K  +LE E+ F    P W+EVV+PAIS+LTV+GIIPFA +VARQIWVKY+ TSRRI VTSG+GG D TEVIY +I+ I  V R FG    GD+ + L+DG+KLEIRS+PNF +V  +++
Sbjct:  130 QERAQVQKQRQVKKDQEKGPRLEAETAFMTTKPSWTEVVIPAISVLTVLGIIPFAGAVARQIWVKYEFTSRRIRVTSGIGGNDETEVIYPEIDSITSVRRGFGVADVGDLNILLKDGSKLEIRSVPNFTEVLKFVQ 265          
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|397569682|gb|EJK46898.1| (hypothetical protein THAOC_34412 [Thalassiosira oceanica])

HSP 1 Score: 143.665 bits (361), Expect = 6.207e-39
Identity = 66/120 (55.00%), Postives = 87/120 (72.50%), Query Frame = 0
Query:  102 ESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQ 221
            E  F+EG P  +E + P ISILTV+GIIP AS+ ARQ WV+Y IT+RRI VTSG+GGKD+ E++Y D+  I  V R FG  GDMV FLRDGAK E+R++PNF +  ++I   +D+D  E+
Sbjct:  102 EETFYEGPPAITETIAPTISILTVVGIIPAASAWARQAWVRYNITNRRIRVTSGIGGKDMAEIVYPDVVEIRTVKRLFG-DGDMVFFLRDGAKFEMRNVPNFEETMDFILGNVDEDVVEE 220          
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|544212878|ref|XP_005536587.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449017149|dbj|BAM80551.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 140.584 bits (353), Expect = 3.763e-38
Identity = 63/145 (43.45%), Postives = 103/145 (71.03%), Query Frame = 0
Query:   78 KEKREGVDAARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQT 222
            K +++ VD    A+  +    LEPE  F++G P W+E+++P +SILTVIG+IPFA+++ARQ WV+Y+I++R I V +G  G+D TEV+Y DIE + YV R  G + D V+ L+ GA+LE+R++P+F   Y +I  ++ ++AR+++
Sbjct:   45 KVRKKSVDEEEEAI--RKPSSLEPEQTFYDGPPSWTELLLPGLSILTVIGVIPFAAALARQYWVRYRISNRSIYVRAGFMGRDETEVVYRDIEEVRYVRRFGGISADYVILLKGGARLELRAVPDFDKTYTFIMQRVSEEARKRS 187          
BLAST of EWM28923.1 vs. NCBI_GenBank
Match: gi|1072234902|gb|OEU19631.1| (hypothetical protein FRACYDRAFT_181826, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 134.42 bits (337), Expect = 1.276e-36
Identity = 63/120 (52.50%), Postives = 88/120 (73.33%), Query Frame = 0
Query:  102 ESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQ 221
            E V +EG P  +E ++P +SILTV+GIIP A++ +RQ WV+YKITSRRI VTSG+GGKD+ E++Y DI  +  V R FG  GDMV FLRDGAK E+R++P+F     +I  Q+D + +++
Sbjct:    1 EEVHYEGPPAITETLIPTLSILTVVGIIPAAAAWSRQAWVRYKITSRRIRVTSGIGGKDMAEIVYPDIIEMRSVKRLFG-DGDMVAFLRDGAKFEMRNIPDFEATIKFILEQVDPEVKKE 119          
The following BLAST results are available for this feature:
BLAST of EWM28923.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111389|gb|EWM28923.1|1.621e-162100.00eribonuclease p [Nannochloropsis gaditana][more]
gi|553184079|ref|XP_005854023.1|1.516e-7783.92ribonuclease p [Nannochloropsis gaditana CCMP526] ... [more]
gi|298711364|emb|CBJ32509.1|5.539e-4759.54conserved unknown protein [Ectocarpus siliculosus][more]
gi|1189380246|gb|OSX68632.1|5.752e-4655.04hypothetical protein BU14_2468s0001 [Porphyra umbi... [more]
gi|676399111|ref|XP_009042833.1|5.952e-4554.84hypothetical protein AURANDRAFT_35230, partial [Au... [more]
gi|676381643|ref|XP_009034100.1|3.136e-4361.47hypothetical protein AURANDRAFT_16832, partial [Au... [more]
gi|873240643|emb|CEL93264.1|3.147e-4254.41unnamed protein product [Vitrella brassicaformis C... [more]
gi|397569682|gb|EJK46898.1|6.207e-3955.00hypothetical protein THAOC_34412 [Thalassiosira oc... [more]
gi|544212878|ref|XP_005536587.1|3.763e-3843.45hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|1072234902|gb|OEU19631.1|1.276e-3652.50hypothetical protein FRACYDRAFT_181826, partial [F... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1755rna1755Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications