rna1754, rna1754 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1754
Unique Name	rna1754
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1776
Alignment location	CM002458.1:43253..45160 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100142g2.2505.mrna
Orig protein id	gnl\|cribi\|Naga_100142g2.2505
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:43253..45160 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100142g2	gene1687	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1754	rna1754-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28924.1	cds1750	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:43253..45160+
coding sequence from alignment at CM002458.1:43253..45160+

mRNA sequence

>rna1754 ID=rna1754|Name=rna1754|organism=Nannochloropsis gaditana|type=mRNA|length=1776bp
ATGGTGGACGTCCTGAACGCGTGCGGCGTGGACTACGTGTGTCTGGGGAA
CCACGAGACCGACATCCCCCACCGGGACATGCTGGAGCGGATTGTGGAGA
GCGACTTCGTCTGGATCAACTCCTCCATCCCCTCGTTGCCGCTACTCGAC
GTGCCCCTCGAGCCTCAGAAAATTCCCGAATACGCGCTGCTGGAAGTGGG
GGGGATAGAGGTGGCGTTGCTGGGTAATGCGGAAGGGAAGGATTCCATCG
CCGCGGACCGAGAGCTTGCGCAGACCCGCCTCTTCCCGCTCATTCTAGGC
GGGCACGACCACGACCCCTTCCTTGAGACCTACGGCGAGGGAGGGAGGGA
GGGCGGGAAGGAGGGCAGCCCTGGAGGCGGGTGGAGCAGCCGGATCCCGT
CTGCGGCTTCGCTGCAGGAGTGGGGGGGGGAAAGGGAGAGGGTGGAGGGA
GAAAAGGAGGTGTCGGAGCGGTGCACGTTGGTCAAAGTAGGCATGGACGC
GACGTGGATCGGGGTCGTGGACGTGGCCTTTGGCGCCGAGGAGGGCGGGG
CGGAGGGCGGGGCGGAGGGCGGGAGGGAGGACGGGGGCGACGCGGGCAAC
GGGAAGAGGCGAAGGAGGAGGAGACTGGAGGTCAAGGCGTGCATCAAGGA
GGCCGCCAGCTTTGCCGTGGACCCGGCTGTGCAGGAGAGGGTGGAGGTGC
ACTGGCGGGTGTTGGAGGAACTAGAACGCGCTGTTCTTTGCCCGGTCCCC
GCCCAGACTCCGCTCTCTTCCAAGGGGGTCAGGAAGATGCAAACCTCGGT
GGGCACCATGCTCCTCACCGCGGCCCGCCAGGCGTTGCAGGTCGACTGTG
TCTTCGTGAACGGTGGCAACATCAGGGCGAGCGTGGCTTACCCTCTCTCA
CAAAAAGTCTTCACCTACAAGGACCTGAAGGCAGAAATCCCTTTCCCTTG
CGAAATGGTCACCGTTCGCCTACCCGGATCTGTCCTCTCCTCCCTTCTCC
AGTATTCTCGCCAATTTGCCCTCCTGGATCCCCCCGTCGAGAAAGGGGGC
TTCTTGCAGGTGGACGAAGGCGTCCGCGTAGACGCTTCCACGCACGCGAT
CACCCACGTTCAAGGCCGGCCTTTGGAAGCTTCTAGAATGTATTCCCTGG
CCACTACCTGGGGGGTGGTCTCTGGCATCGATGATTTGCGCCCCATTCTC
GATTACCGAGAAGCACACCCGGAGGCGGTTTTCCCTACCTCGGCCGAGGC
CGGGCGGGGCTTGAAAGAGGTGTTGGTCGCGCACCACAGCCGCATGCTCT
GGTGGGACCTGGCGAAGCACGTCGGGTTCCGCGCCATGGACACGGACGGT
GACGGGGTCCTGTCCCAGAAGGAGGTGGCGGCTGCGACACAGGCCTGCTA
TGGGGAGGCCCTCTCGCGCCTGGTGGTAGCCAATTTGATGGCCACCGCGG
ACTTCGATGGGGACGGAGTCATATCGGTGAAGGAGTTCATCCGCATCTGC
CTCTCCCAGGAGGCCGCGTTCCAAGACGGCGACACGGACAACGACGAGCG
CCTGAGCTTCGAGGAAGTCTGGTCGTTGTTGAAGGCGCACTATGACGGTA
ACAGCAATGGGAGCCACACTCCCATCCGAGCGGCAGGGGAGGGGAAGGGT
TTGACAGAGGCAGACGTCCGAGAGATGTATGATGAGATTGACTCGGATAA
AAGGGGTGGGATCAGTTGGGCAGAGTTTCGAGAGCACATGGCGCGACAAA
GGGAGCCCACCGCCCTGGTGATTTGA

protein sequence of rna1754

>rna1754-protein ID=rna1754-protein|Name=rna1754|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MLSCLASRTLLTGHISKIPERPFHMILVATRKAFKNIIGEDSGRIFMSDL
ARATATCRRVSSVSIHQHICQRPYKPQQTYLHIPMRKFSSAPPSPAEVLS
VKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDL
HALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAML
RLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDA
MEPFMNVNRSARTYHLVIRGLVNAGQIKKASEIAGQANIVLADSTQELLK
NAMIAEAAEQKKGVEMEEGKDTDKEEGQKID

mRNA from alignment at CM002458.1:43253..45160+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1754 ID=rna1754|Name=rna1754|organism=Nannochloropsis gaditana|type=mRNA|length=1908bp|location=Sequence derived from alignment at CM002458.1:43253..45160+ (Nannochloropsis gaditana)
TGGCCGTCATCGAGCAAATTTACACGCTCTACAGTGAGTTGGTCGCTGGC
AAAAGGTTATATTGTCGGTGGGAGGGCACTGATATACGCTAGTAGCTCAC
GATTACGTTTGTGTCCCTTTCCGCAGGGCTTGGTCCGTGACAAGATTACA
GCCACACCGCCATACCACCGTCAATCATGCTCTCTTGTCTTGCTTCTCGT
ACGCTTCTAACGGGGCACATCAGCAAGATCCCTGAAAGGCCATTTCACAT
GATTTTAGTGGCTACGAGAAAGGCTTTTAAAAATATTATTGGGGAGGATA
GCGGCAGAATATTTATGTCGGATTTGGCACGGGCTACGGCTACTTGCAGA
CGCGTGTCTTCTGTTTCTATTCATCAGCATATATGCCAACGACCGTATAA
GCCGCAGCAGACGTATTTGCATATCCCTATGCGCAAATTTTcatcggccc
ctccctctcccgctgaAGTTTTGTcggtgaagaaagagaaTGGTGGGTAA
CCCTTGTCACTACCTATCTGCCATTCCCTTCACAACGCTCCTATCTCACG
TCGTACGTCCCTCGGTCCTGTACGCAGGAGGAGACTTTGCTGGACAGCCA
CAGCGCACCTTGTTGACGAAGCTTCAGGAAGATGGGGCCTCTCCTCGGGT
ACTGTGGGATGCCTTACAAGAGAAATGCAAGGTAAaatggggagaggaga
caCGGATCACGGCATAGACTGATCTGCATAGCAGTGAAATGCGAATGCAG
GCTTTCGGGCGTGTCTTTTGAAGGCCGCCATTACGTCAGCGTTTTTATGC
GTAAAAACGTTTTTCTCCGTTGAACAGGGCCAGAAACTCCCTCGCCGACA
AGACCTGCACGCACTgttcctttccgcctccaggaACAGCTCCCCCGAGG
ccaaagagaaggacaaagcACTCCTACTATCAGCAGTGGACCTTTTCCTA
TATAAAAACGTCGAGTTCAGGGaagcctctgcctccctcttccttcgggC
CATGCTGCGCTTGGACGGATTGGGCGAAGCGGTCGACGCCTTGCTGGCGC
GGGAAAAGAGACTGGGGCTGTGGGCGCAGCGGAAAATGTTGCACATGGCA
TTGCATAGGTGAGAGCCTCTGGAgccgaagaaaggggaaaaattCGTTTG
TGGGATTATCAGTGGTTGTTTAAAAAAGTATTTGTTGATCCTTTTAATCC
TCCAGGCTGGGCGTGGCCAAGGACACAGAGCGACTCTTGAAGCTTTTTGA
TGCCATGGAGCCTTTCATGAATGTGAATCGCAGTGCCCGGTACGGttaaa
agagggagggtctgcTAGCAGATATATGTGTTTGAAGGTGGTGACGGCAG
AGTGAATCCTTTTATTTACGCCTTACAAGCCCAGTGACTTAAAGATACGC
ATACCAATATACCACGTCACTCCCCTCTCCAATCGCACATTTTTTAAAGA
ACGTACCATCTGGTCATACGGGGTCTTGTCAACGCCGGACAAATAAAGAA
AGCGTCGGAAATTGCAGGGCAAGCAAACATTGTTTTGGCGGACAGTACAC
AAGAATTGCTTAAAAATGCCATGATAGCAGAAGCAGCTGAGCAAAAAAAA
GGagtggagatggaagaggggaaagacacagacaaggaagagggccaAAA
AATTGACTAACACTATTTTTTAAGGGATGGTTTGAATGTATGTTTTTGGG
GACACTTGTAAGCCCAGAAATAACCACTAGCCCCAAAATTCACTAATGTA
CATTATTATAAGATAGAGAACGAGGTAAGGCTAGACTATTCCTTTTCGAC
GCAGTGTCGAATGACAGGCTGGGCAGCAAGGCGCAAGGCGGCGACACTAG
GGGAGGTTAACGGGGAAAGTGCCATAAAAGAAGAAAGTACTCGACGCCGC
GTTTCATC

Coding sequence (CDS) from alignment at CM002458.1:43253..45160+

>rna1754 ID=rna1754|Name=rna1754|organism=Nannochloropsis gaditana|type=CDS|length=4980bp|location=Sequence derived from alignment at CM002458.1:43253..45160+ (Nannochloropsis gaditana)
ATGCTCTCTTGTCTTGCTTCTCGTACGCTTCTAACGGGGCACATCAGCAA
GATCCCTGAAAGGCCATTTCACATGATTTTAGTGGCTACGAGAAAGGCTT
TTAAAAATATTATTGGGGAGGATAGCGGCAGAATATTTATGTCGGATTTG
GCACGGGCTACGGCTACTTGCAGACGCGTGTCTTCTGTTTCTATTCATCA
GCATATATGCCAACGACCGTATAAGCCGCAGCAGACGTATTTGCATATCC
CTATGCGCAAATTTTcatcggcccctccctctcccgctgaAGTTTTGTcg
gtgaagaaagagaaTGGAGGAGACTTTGCTGGACAGCCACAGCGCACCTT
GTTGACGAAGCTTCAGGAAGATGGGGCCTCTCCTCGGGTACTGTGGGATG
CCTTACAAGAGAAATGCAAGGGCCAGAAACTCCCTCGCCGACAAGACCTG
CACGCACTgttcctttccgcctccaggaACAGCTCCCCCGAGGccaaaga
gaaggacaaagcACTCCTACTATCAGCAGTGGACCTTTTCCTATATAAAA
ACGTCGAGTTCAGGGaagcctctgcctccctcttccttcgggCCATGCTG
CGCTTGGACGGATTGGGCGAAGCGGTCGACGCCTTGCTGGCGCGGGAAAA
GAGACTGGGGCTGTGGGCGCAGCGGAAAATGTTGCACATGGCATTGCATA
GGCTGGGCGTGGCCAAGGACACAGAGCGACTCTTGAAGCTTTTTGATGCC
ATGGAGCCTTTCATGAATGTGAATCGCAGTGCCCGAACGTACCATCTGGT
CATACGGGGTCTTGTCAACGCCGGACAAATAAAGAAAGCGTCGGAAATTG
CAGGGCAAGCAAACATTGTTTTGGCGGACAGTACACAAGAATTGCTTAAA
AATGCCATGATAGCAGAAGCAGCTGAGCAAAAAAAAGGagtggagatgga
agaggggaaagacacagacaaggaagagggccaAAAAATTGACTAAATGC
TCTCTTGTCTTGCTTCTCGTACGCTTCTAACGGGGCACATCAGCAAGATC
CCTGAAAGGCCATTTCACATGATTTTAGTGGCTACGAGAAAGGCTTTTAA
AAATATTATTGGGGAGGATAGCGGCAGAATATTTATGTCGGATTTGGCAC
GGGCTACGGCTACTTGCAGACGCGTGTCTTCTGTTTCTATTCATCAGCAT
ATATGCCAACGACCGTATAAGCCGCAGCAGACGTATTTGCATATCCCTAT
GCGCAAATTTTcatcggcccctccctctcccgctgaAGTTTTGTcggtga
agaaagagaaTGGAGGAGACTTTGCTGGACAGCCACAGCGCACCTTGTTG
ACGAAGCTTCAGGAAGATGGGGCCTCTCCTCGGGTACTGTGGGATGCCTT
ACAAGAGAAATGCAAGGGCCAGAAACTCCCTCGCCGACAAGACCTGCACG
CACTgttcctttccgcctccaggaACAGCTCCCCCGAGGccaaagagaag
gacaaagcACTCCTACTATCAGCAGTGGACCTTTTCCTATATAAAAACGT
CGAGTTCAGGGaagcctctgcctccctcttccttcgggCCATGCTGCGCT
TGGACGGATTGGGCGAAGCGGTCGACGCCTTGCTGGCGCGGGAAAAGAGA
CTGGGGCTGTGGGCGCAGCGGAAAATGTTGCACATGGCATTGCATAGGCT
GGGCGTGGCCAAGGACACAGAGCGACTCTTGAAGCTTTTTGATGCCATGG
AGCCTTTCATGAATGTGAATCGCAGTGCCCGAACGTACCATCTGGTCATA
CGGGGTCTTGTCAACGCCGGACAAATAAAGAAAGCGTCGGAAATTGCAGG
GCAAGCAAACATTGTTTTGGCGGACAGTACACAAGAATTGCTTAAAAATG
CCATGATAGCAGAAGCAGCTGAGCAAAAAAAAGGagtggagatggaagag
gggaaagacacagacaaggaagagggccaAAAAATTGACTAAATGCTCTC
TTGTCTTGCTTCTCGTACGCTTCTAACGGGGCACATCAGCAAGATCCCTG
AAAGGCCATTTCACATGATTTTAGTGGCTACGAGAAAGGCTTTTAAAAAT
ATTATTGGGGAGGATAGCGGCAGAATATTTATGTCGGATTTGGCACGGGC
TACGGCTACTTGCAGACGCGTGTCTTCTGTTTCTATTCATCAGCATATAT
GCCAACGACCGTATAAGCCGCAGCAGACGTATTTGCATATCCCTATGCGC
AAATTTTcatcggcccctccctctcccgctgaAGTTTTGTcggtgaagaa
agagaaTGGAGGAGACTTTGCTGGACAGCCACAGCGCACCTTGTTGACGA
AGCTTCAGGAAGATGGGGCCTCTCCTCGGGTACTGTGGGATGCCTTACAA
GAGAAATGCAAGGGCCAGAAACTCCCTCGCCGACAAGACCTGCACGCACT
gttcctttccgcctccaggaACAGCTCCCCCGAGGccaaagagaaggaca
aagcACTCCTACTATCAGCAGTGGACCTTTTCCTATATAAAAACGTCGAG
TTCAGGGaagcctctgcctccctcttccttcgggCCATGCTGCGCTTGGA
CGGATTGGGCGAAGCGGTCGACGCCTTGCTGGCGCGGGAAAAGAGACTGG
GGCTGTGGGCGCAGCGGAAAATGTTGCACATGGCATTGCATAGGCTGGGC
GTGGCCAAGGACACAGAGCGACTCTTGAAGCTTTTTGATGCCATGGAGCC
TTTCATGAATGTGAATCGCAGTGCCCGAACGTACCATCTGGTCATACGGG
GTCTTGTCAACGCCGGACAAATAAAGAAAGCGTCGGAAATTGCAGGGCAA
GCAAACATTGTTTTGGCGGACAGTACACAAGAATTGCTTAAAAATGCCAT
GATAGCAGAAGCAGCTGAGCAAAAAAAAGGagtggagatggaagagggga
aagacacagacaaggaagagggccaAAAAATTGACTAAATGCTCTCTTGT
CTTGCTTCTCGTACGCTTCTAACGGGGCACATCAGCAAGATCCCTGAAAG
GCCATTTCACATGATTTTAGTGGCTACGAGAAAGGCTTTTAAAAATATTA
TTGGGGAGGATAGCGGCAGAATATTTATGTCGGATTTGGCACGGGCTACG
GCTACTTGCAGACGCGTGTCTTCTGTTTCTATTCATCAGCATATATGCCA
ACGACCGTATAAGCCGCAGCAGACGTATTTGCATATCCCTATGCGCAAAT
TTTcatcggcccctccctctcccgctgaAGTTTTGTcggtgaagaaagag
aaTGGAGGAGACTTTGCTGGACAGCCACAGCGCACCTTGTTGACGAAGCT
TCAGGAAGATGGGGCCTCTCCTCGGGTACTGTGGGATGCCTTACAAGAGA
AATGCAAGGGCCAGAAACTCCCTCGCCGACAAGACCTGCACGCACTgttc
ctttccgcctccaggaACAGCTCCCCCGAGGccaaagagaaggacaaagc
ACTCCTACTATCAGCAGTGGACCTTTTCCTATATAAAAACGTCGAGTTCA
GGGaagcctctgcctccctcttccttcgggCCATGCTGCGCTTGGACGGA
TTGGGCGAAGCGGTCGACGCCTTGCTGGCGCGGGAAAAGAGACTGGGGCT
GTGGGCGCAGCGGAAAATGTTGCACATGGCATTGCATAGGCTGGGCGTGG
CCAAGGACACAGAGCGACTCTTGAAGCTTTTTGATGCCATGGAGCCTTTC
ATGAATGTGAATCGCAGTGCCCGAACGTACCATCTGGTCATACGGGGTCT
TGTCAACGCCGGACAAATAAAGAAAGCGTCGGAAATTGCAGGGCAAGCAA
ACATTGTTTTGGCGGACAGTACACAAGAATTGCTTAAAAATGCCATGATA
GCAGAAGCAGCTGAGCAAAAAAAAGGagtggagatggaagaggggaaaga
cacagacaaggaagagggccaAAAAATTGACTAAATGCTCTCTTGTCTTG
CTTCTCGTACGCTTCTAACGGGGCACATCAGCAAGATCCCTGAAAGGCCA
TTTCACATGATTTTAGTGGCTACGAGAAAGGCTTTTAAAAATATTATTGG
GGAGGATAGCGGCAGAATATTTATGTCGGATTTGGCACGGGCTACGGCTA
CTTGCAGACGCGTGTCTTCTGTTTCTATTCATCAGCATATATGCCAACGA
CCGTATAAGCCGCAGCAGACGTATTTGCATATCCCTATGCGCAAATTTTc
atcggcccctccctctcccgctgaAGTTTTGTcggtgaagaaagagaaTG
GAGGAGACTTTGCTGGACAGCCACAGCGCACCTTGTTGACGAAGCTTCAG
GAAGATGGGGCCTCTCCTCGGGTACTGTGGGATGCCTTACAAGAGAAATG
CAAGGGCCAGAAACTCCCTCGCCGACAAGACCTGCACGCACTgttccttt
ccgcctccaggaACAGCTCCCCCGAGGccaaagagaaggacaaagcACTC
CTACTATCAGCAGTGGACCTTTTCCTATATAAAAACGTCGAGTTCAGGGa
agcctctgcctccctcttccttcgggCCATGCTGCGCTTGGACGGATTGG
GCGAAGCGGTCGACGCCTTGCTGGCGCGGGAAAAGAGACTGGGGCTGTGG
GCGCAGCGGAAAATGTTGCACATGGCATTGCATAGGCTGGGCGTGGCCAA
GGACACAGAGCGACTCTTGAAGCTTTTTGATGCCATGGAGCCTTTCATGA
ATGTGAATCGCAGTGCCCGAACGTACCATCTGGTCATACGGGGTCTTGTC
AACGCCGGACAAATAAAGAAAGCGTCGGAAATTGCAGGGCAAGCAAACAT
TGTTTTGGCGGACAGTACACAAGAATTGCTTAAAAATGCCATGATAGCAG
AAGCAGCTGAGCAAAAAAAAGGagtggagatggaagaggggaaagacaca
gacaaggaagagggccaAAAAATTGACTAA

Synonyms

Publications