EWM28924.1, cds1750 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28924.1
Unique Name	cds1750
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:43429..43744 +
Alignment location	CM002458.1:43830..43933 +
Alignment location	CM002458.1:44080..44360 +
Alignment location	CM002458.1:44458..44541 +
Alignment location	CM002458.1:44702..44912 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28924.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100142g2.2505.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:43429..43744 +
CM002458.1	supercontig	CM002458.1:43830..43933 +
CM002458.1	supercontig	CM002458.1:44080..44360 +
CM002458.1	supercontig	CM002458.1:44458..44541 +
CM002458.1	supercontig	CM002458.1:44702..44912 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM28924.1 vs. NCBI_GenBank
Match: gi|585111390|gb|EWM28924.1| (hypothetical protein Naga_100142g2 [Nannochloropsis gaditana])

HSP 1 Score: 680.633 bits (1755), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0

Query:    1 MLSCLASRTLLTGHISKIPERPFHMILVATRKAFKNIIGEDSGRIFMSDLARATATCRRVSSVSIHQHICQRPYKPQQTYLHIPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSARTYHLVIRGLVNAGQIKKASEIAGQANIVLADSTQELLKNAMIAEAAEQKKGVEMEEGKDTDKEEGQKID 331
            MLSCLASRTLLTGHISKIPERPFHMILVATRKAFKNIIGEDSGRIFMSDLARATATCRRVSSVSIHQHICQRPYKPQQTYLHIPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSARTYHLVIRGLVNAGQIKKASEIAGQANIVLADSTQELLKNAMIAEAAEQKKGVEMEEGKDTDKEEGQKID
Sbjct:    1 MLSCLASRTLLTGHISKIPERPFHMILVATRKAFKNIIGEDSGRIFMSDLARATATCRRVSSVSIHQHICQRPYKPQQTYLHIPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSARTYHLVIRGLVNAGQIKKASEIAGQANIVLADSTQELLKNAMIAEAAEQKKGVEMEEGKDTDKEEGQKID 331

[Close]

BLAST of EWM28924.1 vs. NCBI_GenBank
Match: gi|553183830|ref|XP_005853975.1| (hypothetical protein NGA_0442502 [Nannochloropsis gaditana CCMP526] >gi|553184088|ref|XP_005854026.1| hypothetical protein NGA_0442501 [Nannochloropsis gaditana CCMP526] >gi|422295037|gb|EKU22336.1| hypothetical protein NGA_0442501 [Nannochloropsis gaditana CCMP526] >gi|422295084|gb|EKU22383.1| hypothetical protein NGA_0442502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 261/262 (99.62%), Postives = 262/262 (100.00%), Query Frame = 0

Query:    1 MLSCLASRTLLTGHISKIPERPFHMILVATRKAFKNIIGEDSGRIFMSDLARATATCRRVSSVSIHQHICQRPYKPQQTYLHIPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSAR 262
            MLSCLASRTLLTGHISKIPERPFHMILVATRKAFKN+IGEDSGRIFMSDLARATATCRRVSSVSIHQHICQRPYKPQQTYLHIPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSAR
Sbjct:    1 MLSCLASRTLLTGHISKIPERPFHMILVATRKAFKNVIGEDSGRIFMSDLARATATCRRVSSVSIHQHICQRPYKPQQTYLHIPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSAR 262

The following BLAST results are available for this feature:

BLAST of EWM28924.1 vs. NCBI_GenBank

BLAST of EWM28924.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585111390\|gb\|EWM28924.1\|	0.000e+0	100.00	hypothetical protein Naga_100142g2 [Nannochloropsi...	[more]
gi\|553183830\|ref\|XP_005853975.1\|	0.000e+0	99.62	hypothetical protein NGA_0442502 [Nannochloropsis ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna1754	rna1754	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications