rna175, rna175 (mRNA) Nannochloropsis gaditana

Overview
Namerna175
Unique Namerna175
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2416
Alignment locationCM002455.1:457938..458915 +

Link to JBrowse

Properties
Property NameValue
Producttransmembrane protein
Orig transcript idgnl|cribi|Naga_100013g44.9748.mrna
Orig protein idgnl|cribi|Naga_100013g44.9748
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:457938..458915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g44gene166Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna175rna175-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30460.1cds175Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna175 ID=rna175|Name=rna175|organism=Nannochloropsis gaditana|type=mRNA|length=2416bp
TGAAATTTGAGACTCGGTGTCTGACCATTTTACTCAATCATGAATGAAAT
CTTACGGGTCCGGGGATCCGGAGAATTATTGGTGTCACACAAGAGCGCAA
GCTGCAACCTCACTGGCAACAGCCAGAGGCGATGGAATGTCCTCGGTCCC
AGCGATGTGTGGAGCCTATTTCCAACGATTACATTGGTTGTTGTTTCACT
TTGAGACTCACTAACGCCGATGTCTACGCATGTGATCTATCGCACAGGCT
CTCAATGACGTAAAAGTGGACCACCGCTTTTGTGGCGGTGATTCGTCCCC
CGGGTGGAGACCTCAAAAAAGGGGAGGTAATGGCGTTTCCTGTCTTGCTC
TTTGTTCTTCTCTTTCCACTAGTTCATGGATTCACACCGCGCATTACCGC
CGTCGTTACGGGTGGCAATCGCGGTCTGGGTCTGGCCATTTCCGATCTGT
TGGCTGAAGTGGGGTACCATGTCATTTTAACTGCGCGGAATGCAGAGGAG
GGCCAAGCTCGTGTGGCAGACATACAACGCCGACATGGTCAAAATCGTTG
TGAGTTCATGGCTTTAGACGTCAGTGAGCCTAAAAGCATCAAGGCTTTTG
TCGATCAAATGAAGCGGAACGAGGAGATGCGGGGAGGGGTGCCTCACGTT
TTGATTAACAATGCCGGCATATGTGTGAGAGATGAAGACGCAGCTGCCGC
CGTAGAGGGCAGTGGAGGAAGAGAGGGAGTCTATCGCTCCGTTTTCGACA
TAAATACATGGGCACCGGTGGCGTTGATGGAGGCCTGCTTGCCCGGAATG
TGTAAACACGGGTTTGGTTGCATTGTAAATATATCAAGTGGCGACGGAGA
GCTCGCATACCTGCACAGTGAGGTTGCCAAGAGGTTAAAGAGAGTGCGAA
GCCTAGCTGAATTGAAACAATTCTCGGACTGGGTCGCGCAGATGCAACAG
GAAGGTCCGTGGCCACGCGGTGAGGGTTTGGCGCCCGTTTCTTGGCCGGC
TTACAGCTTTTCGAAAGCAGTTTTGAATGCAGCGACTCGGCTGCTGCAAA
GCAGGGTTGATGCACTAGTTTCTAAAGACATGAAAGTGCGGGCGCATCAA
CCCCGAATAGTTGCCATCTGTCCGGGAGACGTCAACACCGCCATGTGTGA
TGAGCATGCCGCACACGACGCGCTTTCTCCCGAGCAAGCAGCATTAGATG
TCGTATGGGCGGTGCTTCATTCTAAGGAATGTCATGGAGGATATTTCTAT
CGAGCAAGAAGAGCCATCCCGTGGTAAAAAAATCCTGGCCAAGCGCAGGA
TGTATTTAATTATGTCGCAAGAGCGCTACTGACACGAACTTTCCATGCAA
CGTCGAGGAGGGCGTCAATTCGTCAAGGAAAACGAATAATTGGCATCATG
ATTGTTTATAAAAAAGTTCAAGACCTCGTCTCAGAACGAAAAGTTTAGAA
CAATTTGTTTTACTGTTTTAGCTGTGTCGCCGCATTAAGCTACCCGGGAG
TTTCGCGCAAAAAGCCAATAAAGCAGCAAGGCGGGCAGGCAAAGCCAAAC
GCCTCGTATCACAGGTGCGCACATGCTTTGAATGCACCAGGCCGCTCCAT
TTCACGTCCGTGTCACTATCAGGCTCTAAACACTTCTTGCGATCAATTTC
ATAAAATCATGACTCGGAGGATCGCGGGAGAAGTGAAGAAAGCGCAAGGC
CAAGGAATGCACAGCGTAACATTCAGCGGCCATGCACGTCGTTTCCTTCG
CAAAATCAGTATGAAAACGGTGCTGCACCCCTAGAACGCTTACGCTTGCA
TTTTTACAGACAGATGAATGGTCATAATGGCAAGGCCCAACCTTGCTCAA
GGCCAGACGAGCTCAAGATGATTCCTGTCAACACGGCGATGGCTCAGAAG
TACGCATCTCAAATGATGAAGAAAGTAACCGGGGAGGCCATGCGCTTGGC
ACCTTGGGGTGCTCCAGCTGGTATCATGGTCTGCTGGATGGTGTATCCGG
CTCTCACAGCAGATTTCAAGAAAAGTGTTGGGCTCCCCTACGACCCTAAG
GATCTGTCTGCTTAGAGTATCGCATGCGCCGGGTACACTGTGGGATAGAA
TTGGATATGCAGTGAAGGGTTGAATGATGCGTGTATAACCTGAAAGTTGG
TGCGCTGGAAGACGCTCTGGATGAAGGGTTTAGACGGATCCAAAGAAGGA
ATTTTAAAGGGGCCTGCGTGGCGAGAAGCGATTTTCCTGGCTGTTAGGGT
TTGCTTTTTTGTTGTGCGAGAGTCGTTCATGCATATCTGGGAAGACTCGA
ATACTTGATACGGATTTTAATCTGAATAAGGCAGCACATTTGTGCACTGT
CCTGAGCGTGTGCTTTGCACGACGACAACTCATCGTACGTCGACACAGCC
ACAATACGGCAACAAC
back to top

protein sequence of rna175

>rna175-protein ID=rna175-protein|Name=rna175|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MVRHRVSNFIKAGYVMLAARVPESRSQQTSASTSIHACYQASPSVLAAPT
LSVMPHAPFLRLFETLQARISSLLFALPPEVVNMRCWLATASELVLILAL
VSSLPSTMAFVPTATRRNPLVRPSLVSSSYTVSHQQQVPFLSVRDSKLFA
LDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSI
SLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKA
ASPIRFPPTVALTPFVANAIGKKPADGADEVE
back to top

mRNA from alignment at CM002455.1:457938..458915+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna175 ID=rna175|Name=rna175|organism=Nannochloropsis gaditana|type=mRNA|length=978bp|location=Sequence derived from alignment at CM002455.1:457938..458915+ (Nannochloropsis gaditana)
ATGGTCAGACACCGAGTCTCAAATTTCATAAAAGCCGGATATGTAATGCT
TGCAGCACGGGTTCCAGAGTCGCGGAGTCAACAAACCAGCGCAAGCACAA
GTATCCACGCGTGCTATCAAGCCTCGCCTTCTGTCTTGGCTGCCCCCACG
CTCTCAGTGATGCCACACGCACCTTTCTTACGCCTCTTTGAAACCCTTCA
GGCACGAATCTCCTCGCTGTTATTTGCATTGCCACCAGAGGTCGTGAATA
TGCGCTGTTGGTTGGCTACGGCCTCTGAGCTGGTGCTCATCTTGGCCCTG
GTAAGCAGTCTTCCTTCAACGATGGCATTTGTACCGACAGCAACACGCCG
CAACCCGCTCGTGCGACCATCGCTTGTTTCTTCCTCCTACACTGTCTCCC
ATCAGCAGCAGGTGAGCGTGTTGCGACTGAGTGGCGTGCGCGTGTGTGGG
CATTGGCATTGAGATTTGTGACGTGGCGTGATAGTTCTCCCCCTCAATTT
CTTCGCCTGGAACCCAATACTCTACGATTTCTTTAAATAGGTCCCGTTTC
TGTCAGTCCGTGACTCGAAACTCTTTGCTTTGGACGACGCGGATGAAGTC
ACCAAGAAATACGGCCTGGAAGCAGGcctcttctccattttcAAGTCCGG
AGgaaacaaggagggaaagaccgTGCAGGCAAAAGATCTACTTGCCAAGT
ATGGGTCAGCGTATCTGATTACTTCAATCTCTCTTTCTGCTGTCTCCTTC
GGTCTGTGCTATGTCCTCGTGACCGCGGGTGTGGATGTACCAGCTCTCCT
CGCACGGGTTGGTATCACGGCGAGCACTCAAACGGAGACTGCAGGAACAG
TTGCTCTTGCCTATGCTGCCCACAAGGCGGCGTCACCCATACGTTTCCCA
CCCACAGTGGCATTGACTCCTTTCGTCGCAAATGCCATCGGAAAGAAGCC
TGCTGATGGAGCAGACGAAGTAGAGTAG
back to top

Coding sequence (CDS) from alignment at CM002455.1:457938..458915+

>rna175 ID=rna175|Name=rna175|organism=Nannochloropsis gaditana|type=CDS|length=1698bp|location=Sequence derived from alignment at CM002455.1:457938..458915+ (Nannochloropsis gaditana)
ATGGTCAGACACCGAGTCTCAAATTTCATAAAAGCCGGATATGTAATGCT
TGCAGCACGGGTTCCAGAGTCGCGGAGTCAACAAACCAGCGCAAGCACAA
GTATCCACGCGTGCTATCAAGCCTCGCCTTCTGTCTTGGCTGCCCCCACG
CTCTCAGTGATGCCACACGCACCTTTCTTACGCCTCTTTGAAACCCTTCA
GGCACGAATCTCCTCGCTGTTATTTGCATTGCCACCAGAGGTCGTGAATA
TGCGCTGTTGGTTGGCTACGGCCTCTGAGCTGGTGCTCATCTTGGCCCTG
GTAAGCAGTCTTCCTTCAACGATGGCATTTGTACCGACAGCAACACGCCG
CAACCCGCTCGTGCGACCATCGCTTGTTTCTTCCTCCTACACTGTCTCCC
ATCAGCAGCAGGTCCCGTTTCTGTCAGTCCGTGACTCGAAACTCTTTGCT
TTGGACGACGCGGATGAAGTCACCAAGAAATACGGCCTGGAAGCAGGcct
cttctccattttcAAGTCCGGAGgaaacaaggagggaaagaccgTGCAGG
CAAAAGATCTACTTGCCAAGTATGGGTCAGCGTATCTGATTACTTCAATC
TCTCTTTCTGCTGTCTCCTTCGGTCTGTGCTATGTCCTCGTGACCGCGGG
TGTGGATGTACCAGCTCTCCTCGCACGGGTTGGTATCACGGCGAGCACTC
AAACGGAGACTGCAGGAACAGTTGCTCTTGCCTATGCTGCCCACAAGGCG
GCGTCACCCATACGTTTCCCACCCACAGTGGCATTGACTCCTTTCGTCGC
AAATGCCATCGGAAAGAAGCCTGCTGATGGAGCAGACGAAGTAGAGTAGA
TGGTCAGACACCGAGTCTCAAATTTCATAAAAGCCGGATATGTAATGCTT
GCAGCACGGGTTCCAGAGTCGCGGAGTCAACAAACCAGCGCAAGCACAAG
TATCCACGCGTGCTATCAAGCCTCGCCTTCTGTCTTGGCTGCCCCCACGC
TCTCAGTGATGCCACACGCACCTTTCTTACGCCTCTTTGAAACCCTTCAG
GCACGAATCTCCTCGCTGTTATTTGCATTGCCACCAGAGGTCGTGAATAT
GCGCTGTTGGTTGGCTACGGCCTCTGAGCTGGTGCTCATCTTGGCCCTGG
TAAGCAGTCTTCCTTCAACGATGGCATTTGTACCGACAGCAACACGCCGC
AACCCGCTCGTGCGACCATCGCTTGTTTCTTCCTCCTACACTGTCTCCCA
TCAGCAGCAGGTCCCGTTTCTGTCAGTCCGTGACTCGAAACTCTTTGCTT
TGGACGACGCGGATGAAGTCACCAAGAAATACGGCCTGGAAGCAGGcctc
ttctccattttcAAGTCCGGAGgaaacaaggagggaaagaccgTGCAGGC
AAAAGATCTACTTGCCAAGTATGGGTCAGCGTATCTGATTACTTCAATCT
CTCTTTCTGCTGTCTCCTTCGGTCTGTGCTATGTCCTCGTGACCGCGGGT
GTGGATGTACCAGCTCTCCTCGCACGGGTTGGTATCACGGCGAGCACTCA
AACGGAGACTGCAGGAACAGTTGCTCTTGCCTATGCTGCCCACAAGGCGG
CGTCACCCATACGTTTCCCACCCACAGTGGCATTGACTCCTTTCGTCGCA
AATGCCATCGGAAAGAAGCCTGCTGATGGAGCAGACGAAGTAGAGTAG
back to top
Synonyms
Publications