EWM30460.1, cds175 (CDS) Nannochloropsis gaditana

Overview
NameEWM30460.1
Unique Namecds175
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:457938..458348 +
Alignment locationCM002455.1:458478..458915 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30460.1
Producttransmembrane protein
Orig transcript idgnl|cribi|Naga_100013g44.9748.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:457938..458348 +
CM002455.1supercontigCM002455.1:458478..458915 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009688DUF1279
Homology
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|585113124|gb|EWM30460.1| (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query:    1 MVRHRVSNFIKAGYVMLAARVPESRSQQTSASTSIHACYQASPSVLAAPTLSVMPHAPFLRLFETLQARISSLLFALPPEVVNMRCWLATASELVLILALVSSLPSTMAFVPTATRRNPLVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPADGADEVE 282
            MVRHRVSNFIKAGYVMLAARVPESRSQQTSASTSIHACYQASPSVLAAPTLSVMPHAPFLRLFETLQARISSLLFALPPEVVNMRCWLATASELVLILALVSSLPSTMAFVPTATRRNPLVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPADGADEVE
Sbjct:    1 MVRHRVSNFIKAGYVMLAARVPESRSQQTSASTSIHACYQASPSVLAAPTLSVMPHAPFLRLFETLQARISSLLFALPPEVVNMRCWLATASELVLILALVSSLPSTMAFVPTATRRNPLVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPADGADEVE 282          
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|168012326|ref|XP_001758853.1| (predicted protein [Physcomitrella patens] >gi|162689990|gb|EDQ76359.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 165.236 bits (417), Expect = 2.074e-47
Identity = 88/134 (65.67%), Postives = 99/134 (73.88%), Query Frame = 0
Query:  153 DADEVTKKYGLEAGLFSIFKSGGNKEG------KTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPADGADE 280
            DA+ VTKKYGLEAGL+ IF S  +KE       KT QAK+LL +YG AYL+TSISLS VSF LCYVLV AGVDV +LL +VGI A+   E  GT ALAYAAHKA SP+RFPPTVALTP VA   GKKP D  D+
Sbjct:   33 DAETVTKKYGLEAGLWKIFSSK-DKENSPEQGTKTNQAKELLKRYGGAYLVTSISLSIVSFSLCYVLVQAGVDVTSLLDKVGIHANDTGEKVGTFALAYAAHKALSPVRFPPTVALTPIVAGWFGKKPEDDNDK 165          
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|302789644|ref|XP_002976590.1| (hypothetical protein SELMODRAFT_105406 [Selaginella moellendorffii] >gi|300155628|gb|EFJ22259.1| hypothetical protein SELMODRAFT_105406 [Selaginella moellendorffii])

HSP 1 Score: 153.295 bits (386), Expect = 4.550e-43
Identity = 86/123 (69.92%), Postives = 102/123 (82.93%), Query Frame = 0
Query:  152 DDADEVTKKYGLEAGLFSIFKSGGNKEG-KTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
            D  +EVT+K+GLEAGL+ IF S  N+ G K VQAK+LLA+YG AYL+TSISLSAVSF LCY+L+ AGVDVP+LLA+VGI ++   E  GT+ALAYAAHKAASPIRFPPTVALTP VA+  GKK
Sbjct:   20 DGVEEVTRKFGLEAGLWKIFSSKKNESGEKKVQAKELLARYGGAYLVTSISLSAVSFALCYLLINAGVDVPSLLAKVGIQSNETGEKVGTLALAYAAHKAASPIRFPPTVALTPIVASWFGKK 142          
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|302783082|ref|XP_002973314.1| (hypothetical protein SELMODRAFT_58827, partial [Selaginella moellendorffii] >gi|300159067|gb|EFJ25688.1| hypothetical protein SELMODRAFT_58827, partial [Selaginella moellendorffii])

HSP 1 Score: 150.984 bits (380), Expect = 1.640e-42
Identity = 85/120 (70.83%), Postives = 101/120 (84.17%), Query Frame = 0
Query:  155 DEVTKKYGLEAGLFSIFKSGGNKEG-KTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
            +EVT+K+GLEAGL+ IF S  N+ G K VQAK+LLA+YG AYL+TSISLSAVSF LCY+L+ AGVDVP+LLA+VGI ++   E  GT+ALAYAAHKAASPIRFPPTVALTP VA+  GKK
Sbjct:    1 EEVTRKFGLEAGLWKIFSSKKNESGEKKVQAKELLARYGGAYLVTSISLSAVSFALCYLLINAGVDVPSLLAKVGIQSNETGEKVGTLALAYAAHKAASPIRFPPTVALTPIVASWFGKK 120          
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|551662776|ref|XP_005834153.1| (hypothetical protein GUITHDRAFT_152177 [Guillardia theta CCMP2712] >gi|428178297|gb|EKX47173.1| hypothetical protein GUITHDRAFT_152177 [Guillardia theta CCMP2712])

HSP 1 Score: 151.754 bits (382), Expect = 7.481e-42
Identity = 97/162 (59.88%), Postives = 118/162 (72.84%), Query Frame = 0
Query:  123 PSLVSSSYTVSHQQQVPFLSVRDS---KLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAI-GKKPADGADE 280
            PS  + S  +S + + P L + D+   +   + + +EVTKK+GLEAGLF+   +  NKEG    AK LLAKYGSAYL+TSISLS VSFG+CYVLV  GVDV ALL++VGITA+  TETAGTVA+AYAAHKAASPIRFPPTVALTP  A  +  KK  D +DE
Sbjct:   31 PSRSAGSNGMSFRNRSPALRMVDTMGEEKSKVKNVEEVTKKWGLEAGLFTAL-TNKNKEGP--DAKQLLAKYGSAYLLTSISLSLVSFGICYVLVDNGVDVAALLSKVGITANGNTETAGTVAIAYAAHKAASPIRFPPTVALTPLTAKYLFNKKVEDSSDE 189          
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|970063798|ref|XP_015058847.1| (PREDICTED: uncharacterized protein LOC107004934 [Solanum pennellii])

HSP 1 Score: 148.673 bits (374), Expect = 1.191e-40
Identity = 87/159 (54.72%), Postives = 112/159 (70.44%), Query Frame = 0
Query:  122 RPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIF--KSGGNKEGKTV-----QAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
            +P+   +S T + +++    ++++     +  ADE+TKK+GLEAGL+ IF  K  G++E K       QAK+LLAKYG AYL TSI+LS +SFGLCY L+ +GVDV +LL +VGI+     E  GT ALAYAAHKAASPIRFPPTVALTP VAN IGKK
Sbjct:   28 KPNKALNSVTSNSKKKFKIRALKEKTTEKVKSADEITKKFGLEAGLWKIFSSKEDGDEENKDKKSKGDQAKELLAKYGGAYLATSITLSLISFGLCYALINSGVDVQSLLQKVGISTDETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVANWIGKK 186          
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|702474338|ref|XP_010031550.1| (PREDICTED: uncharacterized protein LOC104421336 [Eucalyptus grandis] >gi|629084536|gb|KCW50893.1| hypothetical protein EUGRSUZ_J00538 [Eucalyptus grandis])

HSP 1 Score: 147.132 bits (370), Expect = 3.933e-40
Identity = 87/126 (69.05%), Postives = 96/126 (76.19%), Query Frame = 0
Query:  154 ADEVTKKYGLEAGLFSIF------KSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
            ADEVTKKYGLEAGL+ IF      K    K+ KT QAK+LLAKYG AYL TSI+LS +SF LCYVL++AG+DV ALL RVGI+     E  GT ALAYAAHKAASPIRFPPTVALTP VA  IGKK
Sbjct:   61 ADEVTKKYGLEAGLWQIFSSKEEQKGDDEKKSKTDQAKELLAKYGGAYLATSITLSLISFSLCYVLISAGIDVQALLQRVGISLDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWIGKK 186          
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|1191645331|gb|OTF97304.1| (Protein of unknown function (DUF1279) [Helianthus annuus])

HSP 1 Score: 145.976 bits (367), Expect = 9.795e-40
Identity = 85/124 (68.55%), Postives = 96/124 (77.42%), Query Frame = 0
Query:  155 DEVTKKYGLEAGLFSIFKSGGNKEG-----KTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
            DE+TKKYGLE GL+ IF S  ++EG     K  QAK+LL KYG AYL TSI+LS +SF LCY L+TAGVDVPALL +VGI+A    E  GT ALAYAAHKAASPIRFPPTVALTP VA+ IGKK
Sbjct:   60 DEITKKYGLEVGLWKIFSSKEDEEGDGKKSKGDQAKELLTKYGGAYLATSITLSLISFSLCYALITAGVDVPALLQKVGISAGETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKK 183          
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|747083186|ref|XP_011088950.1| (uncharacterized protein LOC105170052 [Sesamum indicum])

HSP 1 Score: 145.976 bits (367), Expect = 1.122e-39
Identity = 85/126 (67.46%), Postives = 99/126 (78.57%), Query Frame = 0
Query:  154 ADEVTKKYGLEAGLFSIFKSG------GNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
            A+E+TKKYGLEAGL+ IF S        +K  K  QAK+LLAKYG AYL TSI+LS +SFGLCY L++AGVDVPALL +VGI+++   E  GT ALAYAAHKAASPIRFPPTVALTP VA+ IGKK
Sbjct:   63 AEEITKKYGLEAGLWKIFSSTEEDNETKDKSSKGDQAKELLAKYGGAYLATSITLSLISFGLCYALISAGVDVPALLQKVGISSNETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKK 188          
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|565394426|ref|XP_006362859.1| (PREDICTED: uncharacterized protein LOC102594292 [Solanum tuberosum])

HSP 1 Score: 145.976 bits (367), Expect = 1.243e-39
Identity = 87/161 (54.04%), Postives = 113/161 (70.19%), Query Frame = 0
Query:  120 LVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIF--KSGGNKEGKTV-----QAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
            L +P+ V +S T +  ++    ++++     +  A+E+TKK+GLEAGL+ IF  K  G++E K       QAK+LLAKYG AYL TSI+LS +SFGLCY L+ +GVDV +LL +VGI+     E  GT ALAYAAHKAASPIRFPPTVALTP VA+ IGKK
Sbjct:   26 LRKPNKVLNSGTSNSNKKFKIRALKEKTTEEVKSAEEITKKFGLEAGLWKIFSSKEDGDEENKDKKSKGDQAKELLAKYGGAYLATSITLSLISFGLCYALINSGVDVQSLLQKVGISTDETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKK 186          
The following BLAST results are available for this feature:
BLAST of EWM30460.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113124|gb|EWM30460.1|0.000e+0100.00transmembrane protein [Nannochloropsis gaditana][more]
gi|168012326|ref|XP_001758853.1|2.074e-4765.67predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|302789644|ref|XP_002976590.1|4.550e-4369.92hypothetical protein SELMODRAFT_105406 [Selaginell... [more]
gi|302783082|ref|XP_002973314.1|1.640e-4270.83hypothetical protein SELMODRAFT_58827, partial [Se... [more]
gi|551662776|ref|XP_005834153.1|7.481e-4259.88hypothetical protein GUITHDRAFT_152177 [Guillardia... [more]
gi|970063798|ref|XP_015058847.1|1.191e-4054.72PREDICTED: uncharacterized protein LOC107004934 [S... [more]
gi|702474338|ref|XP_010031550.1|3.933e-4069.05PREDICTED: uncharacterized protein LOC104421336 [E... [more]
gi|1191645331|gb|OTF97304.1|9.795e-4068.55Protein of unknown function (DUF1279) [Helianthus ... [more]
gi|747083186|ref|XP_011088950.1|1.122e-3967.46uncharacterized protein LOC105170052 [Sesamum indi... [more]
gi|565394426|ref|XP_006362859.1|1.243e-3954.04PREDICTED: uncharacterized protein LOC102594292 [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna175rna175Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications