EWM30460.1, cds175 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|585113124|gb|EWM30460.1| (transmembrane protein [Nannochloropsis gaditana]) HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query: 1 MVRHRVSNFIKAGYVMLAARVPESRSQQTSASTSIHACYQASPSVLAAPTLSVMPHAPFLRLFETLQARISSLLFALPPEVVNMRCWLATASELVLILALVSSLPSTMAFVPTATRRNPLVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPADGADEVE 282
MVRHRVSNFIKAGYVMLAARVPESRSQQTSASTSIHACYQASPSVLAAPTLSVMPHAPFLRLFETLQARISSLLFALPPEVVNMRCWLATASELVLILALVSSLPSTMAFVPTATRRNPLVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPADGADEVE
Sbjct: 1 MVRHRVSNFIKAGYVMLAARVPESRSQQTSASTSIHACYQASPSVLAAPTLSVMPHAPFLRLFETLQARISSLLFALPPEVVNMRCWLATASELVLILALVSSLPSTMAFVPTATRRNPLVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPADGADEVE 282
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|168012326|ref|XP_001758853.1| (predicted protein [Physcomitrella patens] >gi|162689990|gb|EDQ76359.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 165.236 bits (417), Expect = 2.074e-47 Identity = 88/134 (65.67%), Postives = 99/134 (73.88%), Query Frame = 0
Query: 153 DADEVTKKYGLEAGLFSIFKSGGNKEG------KTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPADGADE 280
DA+ VTKKYGLEAGL+ IF S +KE KT QAK+LL +YG AYL+TSISLS VSF LCYVLV AGVDV +LL +VGI A+ E GT ALAYAAHKA SP+RFPPTVALTP VA GKKP D D+
Sbjct: 33 DAETVTKKYGLEAGLWKIFSSK-DKENSPEQGTKTNQAKELLKRYGGAYLVTSISLSIVSFSLCYVLVQAGVDVTSLLDKVGIHANDTGEKVGTFALAYAAHKALSPVRFPPTVALTPIVAGWFGKKPEDDNDK 165
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|302789644|ref|XP_002976590.1| (hypothetical protein SELMODRAFT_105406 [Selaginella moellendorffii] >gi|300155628|gb|EFJ22259.1| hypothetical protein SELMODRAFT_105406 [Selaginella moellendorffii]) HSP 1 Score: 153.295 bits (386), Expect = 4.550e-43 Identity = 86/123 (69.92%), Postives = 102/123 (82.93%), Query Frame = 0
Query: 152 DDADEVTKKYGLEAGLFSIFKSGGNKEG-KTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
D +EVT+K+GLEAGL+ IF S N+ G K VQAK+LLA+YG AYL+TSISLSAVSF LCY+L+ AGVDVP+LLA+VGI ++ E GT+ALAYAAHKAASPIRFPPTVALTP VA+ GKK
Sbjct: 20 DGVEEVTRKFGLEAGLWKIFSSKKNESGEKKVQAKELLARYGGAYLVTSISLSAVSFALCYLLINAGVDVPSLLAKVGIQSNETGEKVGTLALAYAAHKAASPIRFPPTVALTPIVASWFGKK 142
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|302783082|ref|XP_002973314.1| (hypothetical protein SELMODRAFT_58827, partial [Selaginella moellendorffii] >gi|300159067|gb|EFJ25688.1| hypothetical protein SELMODRAFT_58827, partial [Selaginella moellendorffii]) HSP 1 Score: 150.984 bits (380), Expect = 1.640e-42 Identity = 85/120 (70.83%), Postives = 101/120 (84.17%), Query Frame = 0
Query: 155 DEVTKKYGLEAGLFSIFKSGGNKEG-KTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
+EVT+K+GLEAGL+ IF S N+ G K VQAK+LLA+YG AYL+TSISLSAVSF LCY+L+ AGVDVP+LLA+VGI ++ E GT+ALAYAAHKAASPIRFPPTVALTP VA+ GKK
Sbjct: 1 EEVTRKFGLEAGLWKIFSSKKNESGEKKVQAKELLARYGGAYLVTSISLSAVSFALCYLLINAGVDVPSLLAKVGIQSNETGEKVGTLALAYAAHKAASPIRFPPTVALTPIVASWFGKK 120
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|551662776|ref|XP_005834153.1| (hypothetical protein GUITHDRAFT_152177 [Guillardia theta CCMP2712] >gi|428178297|gb|EKX47173.1| hypothetical protein GUITHDRAFT_152177 [Guillardia theta CCMP2712]) HSP 1 Score: 151.754 bits (382), Expect = 7.481e-42 Identity = 97/162 (59.88%), Postives = 118/162 (72.84%), Query Frame = 0
Query: 123 PSLVSSSYTVSHQQQVPFLSVRDS---KLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAI-GKKPADGADE 280
PS + S +S + + P L + D+ + + + +EVTKK+GLEAGLF+ + NKEG AK LLAKYGSAYL+TSISLS VSFG+CYVLV GVDV ALL++VGITA+ TETAGTVA+AYAAHKAASPIRFPPTVALTP A + KK D +DE
Sbjct: 31 PSRSAGSNGMSFRNRSPALRMVDTMGEEKSKVKNVEEVTKKWGLEAGLFTAL-TNKNKEGP--DAKQLLAKYGSAYLLTSISLSLVSFGICYVLVDNGVDVAALLSKVGITANGNTETAGTVAIAYAAHKAASPIRFPPTVALTPLTAKYLFNKKVEDSSDE 189
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|970063798|ref|XP_015058847.1| (PREDICTED: uncharacterized protein LOC107004934 [Solanum pennellii]) HSP 1 Score: 148.673 bits (374), Expect = 1.191e-40 Identity = 87/159 (54.72%), Postives = 112/159 (70.44%), Query Frame = 0
Query: 122 RPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIF--KSGGNKEGKTV-----QAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
+P+ +S T + +++ ++++ + ADE+TKK+GLEAGL+ IF K G++E K QAK+LLAKYG AYL TSI+LS +SFGLCY L+ +GVDV +LL +VGI+ E GT ALAYAAHKAASPIRFPPTVALTP VAN IGKK
Sbjct: 28 KPNKALNSVTSNSKKKFKIRALKEKTTEKVKSADEITKKFGLEAGLWKIFSSKEDGDEENKDKKSKGDQAKELLAKYGGAYLATSITLSLISFGLCYALINSGVDVQSLLQKVGISTDETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVANWIGKK 186
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|702474338|ref|XP_010031550.1| (PREDICTED: uncharacterized protein LOC104421336 [Eucalyptus grandis] >gi|629084536|gb|KCW50893.1| hypothetical protein EUGRSUZ_J00538 [Eucalyptus grandis]) HSP 1 Score: 147.132 bits (370), Expect = 3.933e-40 Identity = 87/126 (69.05%), Postives = 96/126 (76.19%), Query Frame = 0
Query: 154 ADEVTKKYGLEAGLFSIF------KSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
ADEVTKKYGLEAGL+ IF K K+ KT QAK+LLAKYG AYL TSI+LS +SF LCYVL++AG+DV ALL RVGI+ E GT ALAYAAHKAASPIRFPPTVALTP VA IGKK
Sbjct: 61 ADEVTKKYGLEAGLWQIFSSKEEQKGDDEKKSKTDQAKELLAKYGGAYLATSITLSLISFSLCYVLISAGIDVQALLQRVGISLDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWIGKK 186
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|1191645331|gb|OTF97304.1| (Protein of unknown function (DUF1279) [Helianthus annuus]) HSP 1 Score: 145.976 bits (367), Expect = 9.795e-40 Identity = 85/124 (68.55%), Postives = 96/124 (77.42%), Query Frame = 0
Query: 155 DEVTKKYGLEAGLFSIFKSGGNKEG-----KTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
DE+TKKYGLE GL+ IF S ++EG K QAK+LL KYG AYL TSI+LS +SF LCY L+TAGVDVPALL +VGI+A E GT ALAYAAHKAASPIRFPPTVALTP VA+ IGKK
Sbjct: 60 DEITKKYGLEVGLWKIFSSKEDEEGDGKKSKGDQAKELLTKYGGAYLATSITLSLISFSLCYALITAGVDVPALLQKVGISAGETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKK 183
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|747083186|ref|XP_011088950.1| (uncharacterized protein LOC105170052 [Sesamum indicum]) HSP 1 Score: 145.976 bits (367), Expect = 1.122e-39 Identity = 85/126 (67.46%), Postives = 99/126 (78.57%), Query Frame = 0
Query: 154 ADEVTKKYGLEAGLFSIFKSG------GNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
A+E+TKKYGLEAGL+ IF S +K K QAK+LLAKYG AYL TSI+LS +SFGLCY L++AGVDVPALL +VGI+++ E GT ALAYAAHKAASPIRFPPTVALTP VA+ IGKK
Sbjct: 63 AEEITKKYGLEAGLWKIFSSTEEDNETKDKSSKGDQAKELLAKYGGAYLATSITLSLISFGLCYALISAGVDVPALLQKVGISSNETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKK 188
BLAST of EWM30460.1 vs. NCBI_GenBank
Match: gi|565394426|ref|XP_006362859.1| (PREDICTED: uncharacterized protein LOC102594292 [Solanum tuberosum]) HSP 1 Score: 145.976 bits (367), Expect = 1.243e-39 Identity = 87/161 (54.04%), Postives = 113/161 (70.19%), Query Frame = 0
Query: 120 LVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIF--KSGGNKEGKTV-----QAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKK 273
L +P+ V +S T + ++ ++++ + A+E+TKK+GLEAGL+ IF K G++E K QAK+LLAKYG AYL TSI+LS +SFGLCY L+ +GVDV +LL +VGI+ E GT ALAYAAHKAASPIRFPPTVALTP VA+ IGKK
Sbjct: 26 LRKPNKVLNSGTSNSNKKFKIRALKEKTTEEVKSAEEITKKFGLEAGLWKIFSSKEDGDEENKDKKSKGDQAKELLAKYGGAYLATSITLSLISFGLCYALINSGVDVQSLLQKVGISTDETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKK 186 The following BLAST results are available for this feature:
BLAST of EWM30460.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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