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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase family protein |
| Orig transcript id | gnl|cribi|Naga_100013g45.9775.mrna |
| Orig protein id | gnl|cribi|Naga_100013g45.9775 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:455015..457965 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna174 ID=rna174|Name=rna174|organism=Nannochloropsis gaditana|type=mRNA|length=2655bp
AAGCATTACATATCCGGCTTTTATGAAATTTGAGACTCGGTGTCTGACCA
TTTTACTCAATCATGAATGAAATCTTACGGGTCCGGGGATCCGGAGAATT
ATTGGTGTCACACAAGAGCGCAAGCTGCAACCTCACTGGCAACAGCCAGA
GGCGATGGAATGTCCTCGGTCCCAGCGATGTGTGGAGCCTATTTCCAACG
ATTACATTGGTTGTTGTTTCACTTTGAGACTCACTAACGCCGATGTCTAC
GCATGTGATCTATCGCACAGGCTCTCAATGACGTAAAAGTGGACCACCGC
TTTTGTGGCGGTGATTCGTCCCCCGGGTGGAGACCTCAAAAAAGGGGAGG
TAATGGCGTTTCCTGTCTTGCTCTTTGTTCTTCTCTTTCCACTAGTTCAT
GGATTCACACCGCGCATTACCGCCGTCGTTACGGGTGGCAATCGCGGTCT
GGGTCTGGCCATTTCCGATCTGTTGGCTGAAGTGGGGTACCATGTCATTT
TAACTGCGCGGAATGCAGAGGAGGGCCAAGCTCGTGTGGCAGACATACAA
CGCCGACATGGTCAAAATCGTTGTGAGTTCATGGCTTTAGACGTCAGTGA
GCCTAAAAGCATCAAGGCTTTTGTCGATCAAATGAAGCGGAACGAGGAGA
TGCGGGGAGGGGTGCCTCACGTTTTGATTAACAATGCCGGCATATGTGTG
AGAGATGAAGACGCAGCTGCCGCCGTAGAGGGCAGTGGAGGAAGAGAGGG
AGTCTATCGCTCCGTTTTCGACATAAATACATGGGCACCGGTGGCGTTGA
TGGAGGCCTGCTTGCCCGGAATGTGTAAACACGGGTTTGGTTGCATTGTA
AATATATCAAGTGGCGACGGAGAGCTCGCATACCTGCACAGTGAGGTTGC
CAAGAGGTTAAAGAGAGTGCGAAGCCTAGCTGAATTGAAACAATTCTCGG
ACTGGGTCGCGCAGATGCAACAGGAAGGTCCGTGGCCACGCGGTGAGGGT
TTGGCGCCCGTTTCTTGGCCGGCTTACAGCTTTTCGAAAGCAGTTTTGAA
TGCAGCGACTCGGCTGCTGCAAAGCAGGGTTGATGCACTAGTTTCTAAAG
ACATGAAAGTGCGGGCGCATCAACCCCGAATAGTTGCCATCTGTCCGGGA
GACGTCAACACCGCCATGTGTGATGAGCATGCCGCACACGACGCGCTTTC
TCCCGAGCAAGCAGCATTAGATGTCGTATGGGCGGTGCTTCATTCTAAGG
AATGTCATGGAGGATATTTCTATCGAGCAAGAAGAGCCATCCCGTGGTAA
AAAAATCCTGGCCAAGCGCAGGATGTATTTAATTATGTCGCAAGAGCGCT
ACTGACACGAACTTTCCATGCAACGTCGAGGAGGGCGTCAATTCGTCAAG
GAAAACGAATAATTGGCATCATGATTGTTTATAAAAAAGTTCAAGACCTC
GTCTCAGAACGAAAAGTTTAGAACAATTTGTTTTACTGTTTTAGCTGTGT
CGCCGCATTAAGCTACCCGGGAGTTTCGCGCAAAAAGCCAATAAAGCAGC
AAGGCGGGCAGGCAAAGCCAAACGCCTCGTATCACAGGTGCGCACATGCT
TTGAATGCACCAGGCCGCTCCATTTCACGTCCGTGTCACTATCAGGCTCT
AAACACTTCTTGCGATCAATTTCATAAAATCATGACTCGGAGGATCGCGG
GAGAAGTGAAGAAAGCGCAAGGCCAAGGAATGCACAGCGTAACATTCAGC
GGCCATGCACGTCGTTTCCTTCGCAAAATCAGTATGAAAACGGTGCTGCA
CCCCTAGAACGCTTACGCTTGCATTTTTACAGACAGATGAATGGTCATAA
TGGCAAGGTTAGAGCCAGTTCGTTTGCTTGCTCCGTTGTCGCACAACGTG
ACGCTTCGAAAACCGGTATATAACCAGGCCTTGCTAGGCAATTGTTTGCT
GGGGCAAACGTTAATCGGTGTACAACTTTATGTATAAAACATTGGTTACC
CTTAATTGTTTTAAAATGAATGTCAGCCGAAACGCATTTATTTAATTCCA
CTCCTTCTATGCCCTATTCCCAGGCCCAACCTTGCTCAAGGCCAGACGAG
CTCAAGATGATTCCTGTCAACACGGCGATGGCTCAGAAGTACGCATCTCA
AATGATGAAGAAAGTAACCGGGGAGGCCATGCGCTTGGCACCTTGGGGTG
CTCCAGCTGGTATCATGGTCTGCTGGATGGTGTATCCGGCTCTCACAGCA
GATTTCAAGAAAAGTGTTGGGCTCCCCTACGACCCTAAGGATCTGTCTGC
TTAGAGTATCGCATGCGCCGGGTACACTGTGGGATAGAATTGGATATGCA
GTGAAGGGTTGAATGATGCGTGTATAACCTGAAAGTTGGTGCGCTGGAAG
ACGCTCTGGATGAAGGGTTTAGACGGATCCAAAGAAGGAATTTTAAAGGG
GCCTGCGTGGCGAGAAGCGATTTTCCTGGCTGTTAGGGTTTGCTTTTTTG
TTGTGCGAGAGTCGTTCATGCATATCTGGGAAGACTCGAATACTTGATAC
GGATTTTAATCTGAATAAGGCAGCACATTTGTGCACTGTCCTGAGCGTGT
GCTTTGCACGACGACAACTCATCGTACGTCGACACAGCCACAATACGGCA
ACAAC back to topprotein sequence of rna174 >rna174-protein ID=rna174-protein|Name=rna174|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MAFPVLLFVLLFPLVHGFTPRITAVVTGGNRGLGLAISDLLAEVGYHVIL
TARNAEEGQARVADIQRRHGQNRCEFMALDVSEPKSIKAFVDQMKRNEEM
RGGVPHVLINNAGICVRDEDAAAAVEGSGGREGVYRSVFDINTWAPVALM
EACLPGMCKHGFGCIVNISSGDGELAYLHSEVAKRLKRVRSLAELKQFSD
WVAQMQQEGPWPRGEGLAPVSWPAYSFSKAVLNAATRLLQSRVDALVSKD
MKVRAHQPRIVAICPGDVNTAMCDEHAAHDALSPEQAALDVVWAVLHSKE
CHGGYFYRARRAIPW back to topmRNA from alignment at CM002455.1:455015..457965- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna174 ID=rna174|Name=rna174|organism=Nannochloropsis gaditana|type=mRNA|length=2951bp|location=Sequence derived from alignment at CM002455.1:455015..457965- (Nannochloropsis gaditana)
TGAAATTTGAGACTCGGTGTCTGACCATTTTACTCAATCATGAATGAAAT
CTTACGGGTCCGGGGATCCGGAGAATTATTGGTGTCACACAAGAGCGCAA
GCTGCAACCTCACTGGCAACAGCCAGAGGCGATGGAATGTCCTCGGTCCC
AGCGATGTGTGGAGCCTATTTCCAACGATTACATTGGTTGTTGTTTCACT
TTGAGACTCACTAACGCCGATGTCTACGCATGTGATCTATCGCACAGGCT
CTCAATGACGTAAAAGTGGACCACCGCTTTTGTGGCGGTGATTCGTCCCC
CGGGTGGAGACCTCAAAAAAGGGGAGGTAATGGCGTTTCCTGTCTTGCTC
TTTGTTCTTCTCTTTCCACTAGTTCATGGATTCACACCGCGCATTACCGC
CGTCGTTACGGGTGGCAATCGCGGTCTGGGTCTGGCCATTTCCGATCTGT
TGGCTGAAGTGGGGTACCATGTCATTTTAACTGCGCGGAATGCAGAGGAG
GGCCAAGCTCGTGTGGCAGACATACAACGCCGACATGGTCAAAATCGTTG
TGAGTTCATGGCTTTAGACGTCAGTGAGCCTAAAAGCATCAAGGCTTTTG
TCGATCAAATGAAGCGGAACGAGGAGATGCGGGGAGGGGTGCCTCACGTT
TTGATTAACAATGCCGGCATATGTGTGAGAGATGAAGACGCAGCTGCCGC
CGTAGAGGGCAGTGGAGGAAGAGAGGGAGTCTATCGCTCCGTTTTCGACA
TAAATACATGGGCACCGGTGGCGTTGATGGAGGCCTGCTTGCCCGGAATG
TGTAAACACGGGTTTGGTTGCATTGTAAATATATCAAGTGGCGACGGAGA
GCTCGCATACCTGCACAGTGAGGTTGCCAAGAGGTTAAAGAGAGTGCGAA
GCCTAGCTGAATTGAAACAATTCTCGGACTGGGTCGCGCAGATGCAACAG
GAAGGTCCGTGGCCACGCGGTGAGGGTTTGGCGCCCGTTTCTTGGCCGGC
TTACAGCTTTTCGAAAGCAGTTTTGAATGCAGCGACTCGGCTGCTGCAAA
GCAGGGTTGATGCACTAGTTTCTAAAGACATGAAAGTGCGGGCGCATCAA
CCCCGAATAGTTGCCATCTGTCCGGGAGACGTCAACACCGCCATGTGTGA
TGAGCATGCCGCACACGACGCGCTTTCTCCCGAGCAAGCAGCATTAGATG
TCGTATGGGCGGTGCTTCATTCTAAGGAATGTCATGGAGGATATTTCTAT
CGAGCAAGAAGAGCCATCCCGTGGTAAAAAAATCCTGGCCAAGCGCAGGA
TGTATTTAATTATGTCGCAAGAGCGCTACTGACACGAACTTTCCATGCAA
CGTCGAGGAGGGCGTCAATTCGTCAAGGAAAACGAATAATTGGCATCATG
ATTGTTTATAAAAAAGTTCAAGACCTCGTCTCAGAACGAAAAGTTTAGAA
CAATTTGTTTTACTGTTTTAGCTGTGTCGCCGCATTAAGCTACCCGGGAG
TTTCGCGCAAAAAGCCAATAAAGCAGCAAGGCGGGCAGGCAAAGCCAAAC
GCCTCGTATCACAGGTGCGCACATGCTTTGAATGCACCAGGCCGCTCCAT
TTCACGTCCGTGTCACTATCAGGCTCTAAACACTTCTTGCGATCAATTTC
ATAAAATCATGACTCGGAGGATCGCGGGAGAAGTGAAGAAAGCGCAAGGC
CAAGGAATGCACAGCGTAACATTCAGCGGCCATGCACGTCGTTTCCTTCG
CAAAATCAGTATGAAAACGGTGCTGCACCCCTAGAACGCTTACGCTTGCA
TTTTTACAGACAGATGAATGGTCATAATGGCAAGGTTAGAGCCAGTTCGT
TTGCTTGCTCCGTTGTCGCACAACGTGACGCTTCGAAAACCGGTATATAA
CCAGGCCTTGCTAGGCAATTGTTTGCTGGGGCAAACGTTAATCGGTGTAC
AACTTTATGTATAAAACATTGGTTACCCTTAATTGTTTTAAAATGAATGT
CAGCCGAAACGCATTTATTTAATTCCACTCCTTCTATGCCCTATTCCCAG
GCCCAACCTTGCTCAAGGCCAGACGAGCTCAAGATGATTCCTGTCAACAC
GGCGATGGCTCAGAAGTACGCATCTCAAATGATGAAGAAAGTAACCGGGG
AGGCCATGCGCTTGGCACCTTGGGGTGCTCCAGCTGGTAAGGATTCTATT
GGGCGGGAAAAGGTTGGTATGAAGAGTGCTCATCGAAAATCGGTAGGACG
GTGTCGCTTTCAGCCATCTTACATGCCGAGAATTTGTGCAGTATAGAGCT
GTCAGCGTGTGCCCGGTGTTCACCTTGGAGAATTCTCGAGACACTTGGAT
GAACTCCGTGGGATAGTCTAAAAGTAGCGAGAATCTAGTCCCACCTTTGC
TTTTTCCACTTTCACAAGATCTGGCCTCCTTTTGTGCTGTTAGACGTGTT
GGAATGTCGTCAAGTCAGCCCGCTCATTTCCTGTCGTTGGTACACTACAT
CCCAGGTATCATGGTCTGCTGGATGGTGTATCCGGCTCTCACAGCAGATT
TCAAGAAAAGTGTTGGGCTCCCCTACGACCCTAAGGATCTGTCTGCTTAG
AGTATCGCATGCGCCGGGTACACTGTGGGATAGAATTGGATATGCAGTGA
AGGGTTGAATGATGCGTGTATAACCTGAAAGTTGGTGCGCTGGAAGACGC
TCTGGATGAAGGGTTTAGACGGATCCAAAGAAGGAATTTTAAAGGGGCCT
GCGTGGCGAGAAGCGATTTTCCTGGCTGTTAGGGTTTGCTTTTTTGTTGT
GCGAGAGTCGTTCATGCATATCTGGGAAGACTCGAATACTTGATACGGAT
TTTAATCTGAATAAGGCAGCACATTTGTGCACTGTCCTGAGCGTGTGCTT
TGCACGACGACAACTCATCGTACGTCGACACAGCCACAATACGGCAACAA
C back to topCoding sequence (CDS) from alignment at CM002455.1:455015..457965- >rna174 ID=rna174|Name=rna174|organism=Nannochloropsis gaditana|type=CDS|length=948bp|location=Sequence derived from alignment at CM002455.1:455015..457965- (Nannochloropsis gaditana)
ATGGCGTTTCCTGTCTTGCTCTTTGTTCTTCTCTTTCCACTAGTTCATGG
ATTCACACCGCGCATTACCGCCGTCGTTACGGGTGGCAATCGCGGTCTGG
GTCTGGCCATTTCCGATCTGTTGGCTGAAGTGGGGTACCATGTCATTTTA
ACTGCGCGGAATGCAGAGGAGGGCCAAGCTCGTGTGGCAGACATACAACG
CCGACATGGTCAAAATCGTTGTGAGTTCATGGCTTTAGACGTCAGTGAGC
CTAAAAGCATCAAGGCTTTTGTCGATCAAATGAAGCGGAACGAGGAGATG
CGGGGAGGGGTGCCTCACGTTTTGATTAACAATGCCGGCATATGTGTGAG
AGATGAAGACGCAGCTGCCGCCGTAGAGGGCAGTGGAGGAAGAGAGGGAG
TCTATCGCTCCGTTTTCGACATAAATACATGGGCACCGGTGGCGTTGATG
GAGGCCTGCTTGCCCGGAATGTGTAAACACGGGTTTGGTTGCATTGTAAA
TATATCAAGTGGCGACGGAGAGCTCGCATACCTGCACAGTGAGGTTGCCA
AGAGGTTAAAGAGAGTGCGAAGCCTAGCTGAATTGAAACAATTCTCGGAC
TGGGTCGCGCAGATGCAACAGGAAGGTCCGTGGCCACGCGGTGAGGGTTT
GGCGCCCGTTTCTTGGCCGGCTTACAGCTTTTCGAAAGCAGTTTTGAATG
CAGCGACTCGGCTGCTGCAAAGCAGGGTTGATGCACTAGTTTCTAAAGAC
ATGAAAGTGCGGGCGCATCAACCCCGAATAGTTGCCATCTGTCCGGGAGA
CGTCAACACCGCCATGTGTGATGAGCATGCCGCACACGACGCGCTTTCTC
CCGAGCAAGCAGCATTAGATGTCGTATGGGCGGTGCTTCATTCTAAGGAA
TGTCATGGAGGATATTTCTATCGAGCAAGAAGAGCCATCCCGTGGTAA back to top
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