rna1733, rna1733 (mRNA) Nannochloropsis gaditana

Overview
Namerna1733
Unique Namerna1733
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2282
Alignment locationCM002457.1:1366717..1367346 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100943g1.2834.mrna
Orig protein idgnl|cribi|Naga_100943g1.2834
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1366717..1367346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100943g1gene1667Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28944.1cds1729Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1733rna1733-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1733 ID=rna1733|Name=rna1733|organism=Nannochloropsis gaditana|type=mRNA|length=2282bp
CACAAAGGGACGGCAATACTTTTCTCATCACACTCAGGCATAGTGAGCCC
TATGGAAACTGGCTGGCGGCGGATCACTTGGCATAAATACACAGTCGTCA
AATTGCGTGCTGTTCCAAGGGGGTTTCTGACAAACCGGGCTTGAAAAGAA
GCATGGGCTTGGCGAAGAAGCGGCGAGGTAAAGCATGATAAAGGGGACAG
AGAGGCACGTTTCCAGGCAGGCATTCGAAGAGACTCAAGTTGAGCGGGTC
GATAGGTAAGAGGGTGGGAGAAACACGAAGCTTTTGATTGAGAGGAAAGG
AGTAAAAGCCCAGGAAAGTGTCAGAGTGTCTCGACGTGGATCGATGCCTC
CTCGCGCACGTCGGGGGCTACGACTGACGACCACCCTGGCTGAGACTCAC
GTTGTATGTGACACAGCAGTCGAAGTAGTCTGAGAAATATTGTCATGTCG
TAACCAATAGATAGAACGAGGCAGCAGGGTGGTAGTGACGGCCATATTTA
TTAAAAATCACAAGCTGCCATTAAGAGGACAGAATGCTGGAATGAAGCGG
CCCAGCGTGTACTGCCCTGTAGCCCCAATAGGCGACAAAATAATGCGCCT
AAGCCATGACGGCCCTCGTCTAAGCCACACGGTGCAGGAATCGGGCATAG
TAGCATGCTTTCGGATCACGCGGTGTTGTGAGGACTCCGCTCTGCTGAGC
TCTGATTTTCCTTGGCATGCTCACTCTCACGTTGTCGCATGATACGCCTC
TTATCTATTCTCTCTCTTCAAACCCTCCCAGAGCCATGCTAGTGTCAAGG
ATCCTTCTCCCGGTGATAACACTGGCGTGCAGCGCCGCAGCGATGTCGTC
GAAGCGGCACGTTTTGATGGTTCCTCCTTGCTCCACGTTGAGGTCCGCTT
GCCGGTTGCCATTGGCCACGGCATCCACCACCGACTTGTTCGGGGCTGTG
TCTCATAAACAGCCTTGCAGACAGGGCGTTGGAAGAAGAAGGATAGACAC
GATTTCCTCCGGGCGACAAAGAATAGAAGAGCCGCGGGACGCATTCCTCG
CTGCCCTGCGCGCGCGGGGCGGGGGAGGCGGGGGGGCGGCTGCCTCGGGG
CTAAGCAACGCTGGATGGGCCACTGTAGTGGAAGGACTGAAGAATGGCTG
TGCGAGCGGCATGGCGGCAGCCTGCGCGAAGCTCTTGCTCCAGCCGTTCG
ACACCGTGAAGACCCTCCAACAGGCGAACAAAGGGTCGTTGGGGATGCTG
GAGGCGGCGCAGGACCTGGTCTCCAGGAAAGGCGTTTCCGCGCTCTACAC
CGGTCTGGGCGTCACCCTGGTCGGCTCGATCCCTGCCGTCTCCGTCTACT
TTGGCGTGTACCAAGCTGTCAAGAAAGCGCTCCTCCAAGCGCTTCCTCCC
GGGCTTGGCTGGTCGTTGCTGGGGGTGGCGGCCTCCGCGGGGGTGGGGAA
CACGGTCGCCTCCATCTTCCGGGTACCTTACGAGGTGGTCAAACAGCGGC
TGCAAGCGGGCATGTACGTGAGCACGGGGCAGGCCTTGCGCACCATGTAC
CGGACGGAGGGCGGCTTGCTCGCCTTCTTTGGGACCAGCGGGGTGGCCTC
TCAGATTTTGCGCGACGTGCCCTACGCCATCGTCACGCTCCTGACCTACG
AATCCATGCGGCGGACACGCGCCGAGCGCCGTCTGGGACCTGGGGAGTCA
AAGGGGGGCCTCACAAAGGGCTCGACGGCTCTGGAGGACTCGGTGATGGG
CGCGCTGGCGGGAGGGGTAGGCTCCCTGGTTTCGAACCCGATGGACGTGG
TCAAGACGCGCGTGATGACCCAGCCGGGCCTCTACCCCACCGTCTGGTCG
GCGGTGAGCAAGGTGTGGGTGGAGGAGGGGCCTTCCGCCTTCTTCAAGGG
CACGGTCCCGCGGCTTCTGCACAAGGTCCCGGCCAACGCCATCTTCTTCG
CGACCTACGAAATCTTTCGCGGGCTCCTGCGCGTTCAGGGTTAGATGGGT
GGAGGAGGGAGAGTGGGGGGGCAGAGAGAGAGGTGAGGTCCTTTTAAAGC
AAATATGAAAGGAATTGAAGACAGGAGCCTGGCAAACAAAATGCCAATAG
GTGCATGCGTCCTTGATCGATCGGCAACGTGGTGTTCTCTTCAAGGCTCA
TGGCTGACTCTATCGTCCCTCTCGCTCCCTCCTACAATCACTCTCTGGGC
CTCCCCTTTCTCGTTCCCACGCCCCTCCTTGCCTTCGAGCATCTCGATGG
GAGGGCTGGCAGGGCATGGGGAGAGGACCGGG
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protein sequence of rna1733

>rna1733-protein ID=rna1733-protein|Name=rna1733|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
PPRSPSKLPPSSLSPSSSPRATGKVAASCPPGIESISAANIPPPKERQDI
VEQRWNGRHEKYQRKKRPGTLSAASLNVSASALGDTIALLQDLSISQTIE
GTGTGERDRRGACEPQRLEGGEGRVEWEALPTPTSFPLPVLSPCPASPPI
EMLEGKEGRGNEKGEAQRVIVGGSERDDRVSHEP
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mRNA from alignment at CM002457.1:1366717..1367346-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1733 ID=rna1733|Name=rna1733|organism=Nannochloropsis gaditana|type=mRNA|length=630bp|location=Sequence derived from alignment at CM002457.1:1366717..1367346- (Nannochloropsis gaditana)
CCCCCCCGGTCCCCGTCCAAGCTTCCTCCTTCCTCGCTGTCTCCGTCCTC
TTCGCCTAGAGCCACGGGCAAGGTCGCTGCATCTTGCCCGCCCGGTATCG
AGTCCATCTCCGCGGCCAACATCCCTCCGCCGAAGGAGAGGCAGGACATA
GTGGAGCAGAGGTGGAATGGGAGGCACGAGAAATATCAGCGGAAAAAGCG
ACCGGGTACCCTTTCTGCTGCCAGCTTGAACGTGTCTGCCAGTGCTCTGG
GCGACACGATCGCTCTGCTCCAAGACCTCTCTATTTCCCAGACCATAGAG
GGGACTGGGACGGGGGAAAGGGATAGAAGGGGGGCATGCGAGCCTCAGAG
GCTAGAGGGCGGGGAGGGTCGAGTTGAGTGGGAGGCCCTGCCGACACCCA
CCTCGTTCCCGCTCCCGGTCCTCTCCCCATGCCCTGCCAGCCCTCCCATC
GAGATGCTCGAAGGCAAGGAGGGGCGTGGGAACGAGAAAGGGGAGGCCCA
GAGAGTGATTGTAGGAGGGAGCGAGAGGGACGATAGAGTCAGCCATGAGC
CTTGAAGAGAACACCACGTTGCCGATCGATCAAGGACGCATGCACCTATT
GGCATTTTGTTTGCCAGGCTCCTGTCTTCA
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Coding sequence (CDS) from alignment at CM002457.1:1366717..1367346-

>rna1733 ID=rna1733|Name=rna1733|organism=Nannochloropsis gaditana|type=CDS|length=555bp|location=Sequence derived from alignment at CM002457.1:1366717..1367346- (Nannochloropsis gaditana)
CCCCCCCGGTCCCCGTCCAAGCTTCCTCCTTCCTCGCTGTCTCCGTCCTC
TTCGCCTAGAGCCACGGGCAAGGTCGCTGCATCTTGCCCGCCCGGTATCG
AGTCCATCTCCGCGGCCAACATCCCTCCGCCGAAGGAGAGGCAGGACATA
GTGGAGCAGAGGTGGAATGGGAGGCACGAGAAATATCAGCGGAAAAAGCG
ACCGGGTACCCTTTCTGCTGCCAGCTTGAACGTGTCTGCCAGTGCTCTGG
GCGACACGATCGCTCTGCTCCAAGACCTCTCTATTTCCCAGACCATAGAG
GGGACTGGGACGGGGGAAAGGGATAGAAGGGGGGCATGCGAGCCTCAGAG
GCTAGAGGGCGGGGAGGGTCGAGTTGAGTGGGAGGCCCTGCCGACACCCA
CCTCGTTCCCGCTCCCGGTCCTCTCCCCATGCCCTGCCAGCCCTCCCATC
GAGATGCTCGAAGGCAAGGAGGGGCGTGGGAACGAGAAAGGGGAGGCCCA
GAGAGTGATTGTAGGAGGGAGCGAGAGGGACGATAGAGTCAGCCATGAGC
CTTGA
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Synonyms
Publications