rna1732, rna1732 (mRNA) Nannochloropsis gaditana

Overview
Namerna1732
Unique Namerna1732
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length630
Alignment locationCM002457.1:1364652..1366933 +

Link to JBrowse

Properties
Property NameValue
Productmitochondrial carrier
Orig transcript idgnl|cribi|Naga_100943g2.2835.mrna
Orig protein idgnl|cribi|Naga_100943g2.2835
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1364652..1366933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100943g2gene1666Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1732rna1732-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28945.1cds1728Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1732 ID=rna1732|Name=rna1732|organism=Nannochloropsis gaditana|type=mRNA|length=630bp
ATGGATTTACGTCTCCGCCGTAGCGGGCAGGTGGAGGAGGAGACGGAGGC
GGGGATGGGTCGGTCCACTCCCCCGCCCTCCTTCTACGCTTCGTACCGCA
ACTCGGGCGAGGAGGAAGACGACGCACGACCACTCTTGGACCGGAGAAGC
AGCAGCACTGCGTACTTCCAGCACCAGAACCTGATGTCCCCGGGCGCTGA
CCGCGTCTTTGCCTACCAGGCCTCGAGGGCGGGGGACGAAGAGGGAGACC
CGCGCCGGAGGGCAGACGATGACAGGAACGGCCTCGATCCTGCAAGCATG
CCCTCCCCGTCAGACATCTTGCGCAAGCCCATGCGGTTCGGTGCCGGGGT
CCGCCAAGATCCGGATAGCCCCCTCCACCACCCTCCCTTTCCCGCCCCGC
CCTCCCCTCCGAGGCTCGGCGGCCAAGCGCACCCGCACCGAAGCTCGCAC
CCGGGCCGGAGGGAGTCGAGCATCATCGGCGGCAGCCTGCACCTGGCCCC
TGGGGACATGAGCAGCATCGCCCTGCTGCTGATCCTCTACACCCTGCAGG
GCATCCCCATGGGCCTCTCCGCCTCGGTGCCTTTCCTGCTCACGCCTGGC
TTTTGCCCGTGCAGTGCCTGTGTGGGCTGA
back to top

protein sequence of rna1732

>rna1732-protein ID=rna1732-protein|Name=rna1732|organism=Nannochloropsis gaditana|type=polypeptide|length=425bp
MLTLTLSHDTPLIYSLSSNPPRAMLVSRILLPVITLACSAAAMSSKRHVL
MVPPCSTLRSACRLPLATASTTDLFGAVSHKQPCRQGVGRRRIDTISSGR
QRIEEPRDAFLAALRARGGGGGGAAASGLSNAGWATVVEGLKNGCASGMA
AACAKLLLQPFDTVKTLQQANKGSLGMLEAAQDLVSRKGVSALYTGLGVT
LVGSIPAVSVYFGVYQAVKKALLQALPPGLGWSLLGVAASAGVGNTVASI
FRVPYEVVKQRLQAGMYVSTGQALRTMYRTEGGLLAFFGTSGVASQILRD
VPYAIVTLLTYESMRRTRAERRLGPGESKGGLTKGSTALEDSVMGALAGG
VGSLVSNPMDVVKTRVMTQPGLYPTVWSAVSKVWVEEGPSAFFKGTVPRL
LHKVPANAIFFATYEIFRGLLRVQG
back to top

mRNA from alignment at CM002457.1:1364652..1366933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1732 ID=rna1732|Name=rna1732|organism=Nannochloropsis gaditana|type=mRNA|length=2282bp|location=Sequence derived from alignment at CM002457.1:1364652..1366933+ (Nannochloropsis gaditana)
CACAAAGGGACGGCAATACTTTTCTCATCACACTCAGGCATAGTGAGCCC
TATGGAAACTGGCTGGCGGCGGATCACTTGGCATAAATACACAGTCGTCA
AATTGCGTGCTGTTCCAAGGGGGTTTCTGACAAACCGGGCTTGAAAAGAA
GCATGGGCTTGGCGAAGAAGCGGCGAGGTAAAGCATGATAAAGGGGACAG
AGAGGCACGTTTCCAGGCAGGCATTCGAAGAGACTCAAGTTGAGCGGGTC
GATAGGtaagagggtgggagaaaCACGAAGCTTTTGattgagaggaaagg
agtaAAAGCCCAGGAAAGTGTCAGAGTGTCTCGACGTGGATCGATGCCTC
CTCGCGCACGTCGGGGGCTACGACTGACGACCACCCTGGCTGAGACTCAC
GTTGTATGTGACACAGCAGTCGAAGTAGTCTGAGAAATATTGTCATGTCG
TAACCAATAGATAGAACGAGGCAGCAGGGTGGTAGTGACGGCCATATTTA
TTAAAAATCACAAGCTGCCATTAAGAGGACAGAATGCTGGAATGAAGCGG
CCCAGCGTGTACTGCCCTGTAGCCCCAATAGGCGACAAAATAATGCGCCT
AAGCCATGACGGCCCTCGTCTAAGCCACACGGTGCAGGAATCGGGCATAG
TAGCATGCTTTCGGATCACGCGGTGTTGTGAGGACTCCGCTCTGCTGAGC
TCTGATTTTCCTTGGCATGCTCACTCTCACGTTGTCGCATGATACGCCTC
TTATCTATTCTCTCTCTTCAAACCCTCCCAGAGCCATGCTAGTGTCAAGG
ATCCTTCTCCCGGTGATAACACTGGCGTGCAGCGCCGCAGCGATGTCGTC
GAAGCGGCACGTTTTGATggttcctccttgctccacgTTGAGGTCCGCTT
GCCGGTTGCCATTGGCCACGGCATCCACCACCGACTTGTTCGGGGCTGTG
TCTCATAAACAGCCTTGCAGACAGGGcgttggaagaagaaggataGACAC
GATTTCCTCCGGGCGACAAAGAATAGAAGAGCCGCGGGACGCATTCCTCG
CTGCCCTGCGcgcgcggggcgggggaggcgggggggcggctgCCTCGGGG
CTAAGCAACGCTGGATGGGCCACTGTAGTGGAAGGACTGAAGAATGGCTG
TGCGAGCGGCATGGCGGCAGCCTGCGCGAAGCTCTTGCTCCAGCCGTTCG
ACACCGTGAAGACCCTCCAACAGGCGAACAAAGGGTCGTTGGGgatgctg
gaggcggcgcaggaCCTGGTCTCCAGGAAAGGCGTTTCCGCGCTCTACAC
CGGTCTGGGCGTCACCCTGGTCGGCTCGATCCCTGCCGTCTCCGTCTACT
TTGGCGTGTACCAAGCTGTCAAGAAAGCGCTCCTCCAAGCGCTTCCTCCC
GGGCTTGGCTGGTCGTtgctgggggtggcggcctccgcgggggtggggaa
caCGGTCGCCTCCATCTTCCGGGTACCTTACGAGGTGGTCAAACAGCGGC
TGCAAGCGGGCATGTACGTGAGCACGGGGCAGGCCTTGCGCACCATGTAC
CGGACGGAGGGCGGCTTGCTCGCCTTCTTTGGGACCAGCGGGGTGGCCTC
TCAGATTTTGCGCGACGTGCCCTACGCCATCGTCACGCTCCTGACCTACG
AATCCATGCGGCGGACACGCGCCGAGCGCCGTCTGGGACCTGGGGAGTCA
AAGGGGGGCCTCACAAAGGGCTCGACGGCTCTGGAGGACTCGGTGATGGG
CGCGCTGGCGGGAGGGGTAGGCTCCCTGGTTTCGAACCCGATGGACGTGG
TCAAGACGCGCGTGATGACCCAGCCGGGCCTCTACCCCACCGTCTGGTCG
GCGGTGAGCAAGGtgtgggtggaggaggggccttccgccttcttcaAGGG
CACGGTCCCGCGGCTTCTGCACAAGGTCCCGGCCAACGCCATCTTCTTCG
CGACCTACGAAATCTTTCGCGGGCTCCTGCGCGTTCAGGGTTagatgggt
ggaggagggagagtgggggggcagagagagaggtgaggTCCTTTTAAAGC
AAATATGAAAGGAATTGAAGACAGGAGCCTGGCAAACAAAATGCCAATAG
GTGCATGCGTCCTTGATCGATCGGCAACGTGGTGTTCTCTTCAAGGCTCA
TGGCTGACTCTAtcgtccctctcgctccctcctacAATCACTCTCTgggc
ctcccctttctcgttcccacgcccctccttgccttcgaGCATCTCGATGG
GAGGGCTGGCAGGGCATGGGGAGAGGACCGGG
back to top

Coding sequence (CDS) from alignment at CM002457.1:1364652..1366933+

>rna1732 ID=rna1732|Name=rna1732|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002457.1:1364652..1366933+ (Nannochloropsis gaditana)
ATGCTCACTCTCACGTTGTCGCATGATACGCCTCTTATCTATTCTCTCTC
TTCAAACCCTCCCAGAGCCATGCTAGTGTCAAGGATCCTTCTCCCGGTGA
TAACACTGGCGTGCAGCGCCGCAGCGATGTCGTCGAAGCGGCACGTTTTG
ATggttcctccttgctccacgTTGAGGTCCGCTTGCCGGTTGCCATTGGC
CACGGCATCCACCACCGACTTGTTCGGGGCTGTGTCTCATAAACAGCCTT
GCAGACAGGGcgttggaagaagaaggataGACACGATTTCCTCCGGGCGA
CAAAGAATAGAAGAGCCGCGGGACGCATTCCTCGCTGCCCTGCGcgcgcg
gggcgggggaggcgggggggcggctgCCTCGGGGCTAAGCAACGCTGGAT
GGGCCACTGTAGTGGAAGGACTGAAGAATGGCTGTGCGAGCGGCATGGCG
GCAGCCTGCGCGAAGCTCTTGCTCCAGCCGTTCGACACCGTGAAGACCCT
CCAACAGGCGAACAAAGGGTCGTTGGGgatgctggaggcggcgcaggaCC
TGGTCTCCAGGAAAGGCGTTTCCGCGCTCTACACCGGTCTGGGCGTCACC
CTGGTCGGCTCGATCCCTGCCGTCTCCGTCTACTTTGGCGTGTACCAAGC
TGTCAAGAAAGCGCTCCTCCAAGCGCTTCCTCCCGGGCTTGGCTGGTCGT
tgctgggggtggcggcctccgcgggggtggggaacaCGGTCGCCTCCATC
TTCCGGGTACCTTACGAGGTGGTCAAACAGCGGCTGCAAGCGGGCATGTA
CGTGAGCACGGGGCAGGCCTTGCGCACCATGTACCGGACGGAGGGCGGCT
TGCTCGCCTTCTTTGGGACCAGCGGGGTGGCCTCTCAGATTTTGCGCGAC
GTGCCCTACGCCATCGTCACGCTCCTGACCTACGAATCCATGCGGCGGAC
ACGCGCCGAGCGCCGTCTGGGACCTGGGGAGTCAAAGGGGGGCCTCACAA
AGGGCTCGACGGCTCTGGAGGACTCGGTGATGGGCGCGCTGGCGGGAGGG
GTAGGCTCCCTGGTTTCGAACCCGATGGACGTGGTCAAGACGCGCGTGAT
GACCCAGCCGGGCCTCTACCCCACCGTCTGGTCGGCGGTGAGCAAGGtgt
gggtggaggaggggccttccgccttcttcaAGGGCACGGTCCCGCGGCTT
CTGCACAAGGTCCCGGCCAACGCCATCTTCTTCGCGACCTACGAAATCTT
TCGCGGGCTCCTGCGCGTTCAGGGTTag
back to top
Synonyms
Publications