rna1731, rna1731 (mRNA) Nannochloropsis gaditana

Overview
Namerna1731
Unique Namerna1731
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length213
Alignment locationCM002457.1:1363100..1364126 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100943g3.2836.mrna
Orig protein idgnl|cribi|Naga_100943g3.2836
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1363100..1364126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100943g3gene1665Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1731rna1731-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28946.1cds1727Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1731 ID=rna1731|Name=rna1731|organism=Nannochloropsis gaditana|type=mRNA|length=213bp
ATGGCAACGCAAGACATCGCCGTCGACGGGTGGGCCCTGACCATGTTGAG
TCGCGAGAACGTCGGCCTTGCCTCCACTTGCAACACCATTGGGCAGACGC
TAGGCTATTTTCTGGCCCACGTCGGCTTCCTGGCTCTCAACTCCGCCGAG
ACCTGCAACCGCTTCTTGAGGCGAGAGTCCCTCGACCAGGGTGGGTCTAA
ACCTGGGCGGTAA
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protein sequence of rna1731

>rna1731-protein ID=rna1731-protein|Name=rna1731|organism=Nannochloropsis gaditana|type=polypeptide|length=209bp
MDLRLRRSGQVEEETEAGMGRSTPPPSFYASYRNSGEEEDDARPLLDRRS
SSTAYFQHQNLMSPGADRVFAYQASRAGDEEGDPRRRADDDRNGLDPASM
PSPSDILRKPMRFGAGVRQDPDSPLHHPPFPAPPSPPRLGGQAHPHRSSH
PGRRESSIIGGSLHLAPGDMSSIALLLILYTLQGIPMGLSASVPFLLTPG
FCPCSACVG
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mRNA from alignment at CM002457.1:1363100..1364126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1731 ID=rna1731|Name=rna1731|organism=Nannochloropsis gaditana|type=mRNA|length=1027bp|location=Sequence derived from alignment at CM002457.1:1363100..1364126- (Nannochloropsis gaditana)
ATGGATTTACGTCTCCGCCGTAGCGGGCAGGTGGAGGAGGAGACGGAGGC
GGGGATGGGTCGGTCCACTCCCCCGCCCTCCTTCTACGCTTCGTACCGCA
ACTCGGGCGAGGAGGAAGACGACGCACGACCACTCTTGGACCGGAGAAGC
AGCAGCACTGCGTACTTCCAGCACCAGAACCTGATGTCCCCGGGCGCTGA
CCGCGTCTTTGCCTACCAGGCCTCGAGGGCGGGGGACGAAGAGGGAGACC
CGCGCCGGAGGGCAGACGATGACAGGAACGGCCTCGATCCTGCAAGCATG
CCCTCCCCGTCAGACATCTTGCGCAAGCCCATGCGGTTCGGTGCCGGGGT
CCGCCAAGATCCGGATAGCCCCCTCCACCACCCTCCCTTTCCCGCCCCGC
CCTCCCCTCCGAGGCTCGGCGGCCAAGCGCACCCGCACCGAAGCTCGCAC
CCGGGCCGGAGGGAGTCGAGCATCATCGGCGGCAGCCTGCACCTGGCCCC
TGGGGACATGAGCAGCATCGCCCTGCTGCTGATCCTCTACACCCTGCAGG
GCATCCCCATGGGCCTCTCCGCCTCGGTGCCTTTCCTGCTCACGGTGCGG
AGGGAGGGAGGAGGGAGAGAAGGCAGGGGACGAAGCCCTGGAATAGGGCG
GCCAAGGGCACGGGAGGGGAAGGGGGGAGAGCCCTGTCCTCCGGGTAGTC
TTTGTCGAGCCTTTGATCGTCCTCCCCGCCCTCCAAGTCCCGCTCGTGCC
AGGCGCAGCTCCCACCCTCGCGTCCGATCGCCCCATCCCGCTGTCTTTGC
CGCGACCATCCACTCACCCCCGCCCCTTCATCTCCCCTCCTCTCCCCTTC
CCCGCATCCTTACTCCTCAGGACCACGTGTCTTACACGCAGCAGGCCCTC
TTCTCCCTCGTCTCCCTCCCCTTCTCTTTCAAGCTCCTCTGGGCCCCCAT
CGTCGATTCCACCTCCTTCTGGGGCCTGGGCCGGCGCAAAGCCTGGCTTT
TGCCCGTGCAGTGCCTGTGTGGGCTGA
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Coding sequence (CDS) from alignment at CM002457.1:1363100..1364126-

>rna1731 ID=rna1731|Name=rna1731|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002457.1:1363100..1364126- (Nannochloropsis gaditana)
CCTGGCTTTTGCCCGTGCAGTGCCTGTGTGGGCTGAATGGATTTACGTCT
CCGCCGTAGCGGGCAGGTGGAGGAGGAGACGGAGGCGGGGATGGGTCGGT
CCACTCCCCCGCCCTCCTTCTACGCTTCGTACCGCAACTCGGGCGAGGAG
GAAGACGACGCACGACCACTCTTGGACCGGAGAAGCAGCAGCACTGCGTA
CTTCCAGCACCAGAACCTGATGTCCCCGGGCGCTGACCGCGTCTTTGCCT
ACCAGGCCTCGAGGGCGGGGGACGAAGAGGGAGACCCGCGCCGGAGGGCA
GACGATGACAGGAACGGCCTCGATCCTGCAAGCATGCCCTCCCCGTCAGA
CATCTTGCGCAAGCCCATGCGGTTCGGTGCCGGGGTCCGCCAAGATCCGG
ATAGCCCCCTCCACCACCCTCCCTTTCCCGCCCCGCCCTCCCCTCCGAGG
CTCGGCGGCCAAGCGCACCCGCACCGAAGCTCGCACCCGGGCCGGAGGGA
GTCGAGCATCATCGGCGGCAGCCTGCACCTGGCCCCTGGGGACATGAGCA
GCATCGCCCTGCTGCTGATCCTCTACACCCTGCAGGGCATCCCCATGGGC
CTCTCCGCCTCGGTGCCTTTCCTGCTCACGCCTGGCTTTTGCCCGTGCAG
TGCCTGTGTGGGCTGAATGGATTTACGTCTCCGCCGTAGCGGGCAGGTGG
AGGAGGAGACGGAGGCGGGGATGGGTCGGTCCACTCCCCCGCCCTCCTTC
TACGCTTCGTACCGCAACTCGGGCGAGGAGGAAGACGACGCACGACCACT
CTTGGACCGGAGAAGCAGCAGCACTGCGTACTTCCAGCACCAGAACCTGA
TGTCCCCGGGCGCTGACCGCGTCTTTGCCTACCAGGCCTCGAGGGCGGGG
GACGAAGAGGGAGACCCGCGCCGGAGGGCAGACGATGACAGGAACGGCCT
CGATCCTGCAAGCATGCCCTCCCCGTCAGACATCTTGCGCAAGCCCATGC
GGTTCGGTGCCGGGGTCCGCCAAGATCCGGATAGCCCCCTCCACCACCCT
CCCTTTCCCGCCCCGCCCTCCCCTCCGAGGCTCGGCGGCCAAGCGCACCC
GCACCGAAGCTCGCACCCGGGCCGGAGGGAGTCGAGCATCATCGGCGGCA
GCCTGCACCTGGCCCCTGGGGACATGAGCAGCATCGCCCTGCTGCTGATC
CTCTACACCCTGCAGGGCATCCCCATGGGCCTCTCCGCCTCGGTGCCTTT
CCTGCTCACG
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Synonyms
Publications