EWM28946.1, cds1727 (CDS) Nannochloropsis gaditana

Overview
NameEWM28946.1
Unique Namecds1727
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1363533..1364126 -
Alignment locationCM002457.1:1363100..1363135 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28946.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100943g3.2836.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1363533..1364126 -
CM002457.1supercontigCM002457.1:1363100..1363135 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28946.1 vs. NCBI_GenBank
Match: gi|585111417|gb|EWM28946.1| (hypothetical protein Naga_100943g3 [Nannochloropsis gaditana])

HSP 1 Score: 416.387 bits (1069), Expect = 5.013e-147
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0 
Query:    1 MDLRLRRSGQVEEETEAGMGRSTPPPSFYASYRNSGEEEDDARPLLDRRSSSTAYFQHQNLMSPGADRVFAYQASRAGDEEGDPRRRADDDRNGLDPASMPSPSDILRKPMRFGAGVRQDPDSPLHHPPFPAPPSPPRLGGQAHPHRSSHPGRRESSIIGGSLHLAPGDMSSIALLLILYTLQGIPMGLSASVPFLLTPGFCPCSACVG 209
            MDLRLRRSGQVEEETEAGMGRSTPPPSFYASYRNSGEEEDDARPLLDRRSSSTAYFQHQNLMSPGADRVFAYQASRAGDEEGDPRRRADDDRNGLDPASMPSPSDILRKPMRFGAGVRQDPDSPLHHPPFPAPPSPPRLGGQAHPHRSSHPGRRESSIIGGSLHLAPGDMSSIALLLILYTLQGIPMGLSASVPFLLTPGFCPCSACVG
Sbjct:    1 MDLRLRRSGQVEEETEAGMGRSTPPPSFYASYRNSGEEEDDARPLLDRRSSSTAYFQHQNLMSPGADRVFAYQASRAGDEEGDPRRRADDDRNGLDPASMPSPSDILRKPMRFGAGVRQDPDSPLHHPPFPAPPSPPRLGGQAHPHRSSHPGRRESSIIGGSLHLAPGDMSSIALLLILYTLQGIPMGLSASVPFLLTPGFCPCSACVG 209
[Close]
BLAST of EWM28946.1 vs. NCBI_GenBank
Match: gi|553192431|ref|XP_005855568.1| (hypothetical protein NGA_0607100, partial [Nannochloropsis gaditana CCMP526] >gi|422293483|gb|EKU20783.1| hypothetical protein NGA_0607100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 233.802 bits (595), Expect = 2.713e-76
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MDLRLRRSGQVEEETEAGMGRSTPPPSFYASYRNSGEEEDDARPLLDRRSSSTAYFQHQNLMSPGADRVFAYQASRAGDEEGDPRRRADDDRNGLDPASMPSPSDILRKPMRFGAGV 117
            MDLRLRRSGQVEEETEAGMGRSTPPPSFYASYRNSGEEEDDARPLLDRRSSSTAYFQHQNLMSPGADRVFAYQASRAGDEEGDPRRRADDDRNGLDPASMPSPSDILRKPMRFGAGV
Sbjct:    1 MDLRLRRSGQVEEETEAGMGRSTPPPSFYASYRNSGEEEDDARPLLDRRSSSTAYFQHQNLMSPGADRVFAYQASRAGDEEGDPRRRADDDRNGLDPASMPSPSDILRKPMRFGAGV 117
The following BLAST results are available for this feature:
BLAST of EWM28946.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111417|gb|EWM28946.1|5.013e-147100.00hypothetical protein Naga_100943g3 [Nannochloropsi... [more]
gi|553192431|ref|XP_005855568.1|2.713e-76100.00hypothetical protein NGA_0607100, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1731rna1731Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications