rna1724, rna1724 (mRNA) Nannochloropsis gaditana

Overview
Namerna1724
Unique Namerna1724
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1474
Alignment locationCM002457.1:1340551..1341397 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102457g1.1603.mrna
Orig protein idgnl|cribi|Naga_102457g1.1603
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1340551..1341397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102457g1gene1658Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28953.1cds1720Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1724rna1724-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1724 ID=rna1724|Name=rna1724|organism=Nannochloropsis gaditana|type=mRNA|length=1474bp
TCCCACCTTCAGAAACGCTTCTCGCGCCTACTTCCCAGCATTCGCAATGA
CCTGTACTACAAGCTGTCGGCGGAAGACGTGATGGAGGAGCAGCTCTACA
TCGTCCCCCTCCTCACCACCTACGGGAAGCTTGTGGAGCTCGTGAGGGAG
CATCCCTACAGGGGCTACCCCGTCGTCACGCCGCGCCAGGAGCTGCTTGG
GCTCGTCAAGCGCCGCACCCTCCTCTTGCACCTGACTCGCGTCTTCCGGG
GCCAAGGGCTCATGCTCGAACTCACCCAGCTGATGCCTCTGGACGTGCAG
CTCGTCAAGCCCTTGTCCGGACCTCTCCCTCCCACCTCCTCCTCCATGCT
CTCCACCATACCCTCCCCCTCGGGCGGGCGCGGGAGGAGGAAGGAGAAGA
AGAAGGACCGTGCCCGGTCGAAGGCCAAAGAAAAGGCCGAGAAGTCGGCG
GAGGAGAAAGCAGAGGAGCTGCAGGCCCTCCTGGCCTCGCCCATCGATCT
CCGCAAGGCCCCCGACATCTCTGTGGACCCATCCGCCTTCCGGGTATCCG
AACTCACGCCTCTCAGCGACGTCTACGCGCTCTTTGACTTGATTCGGTGC
AATCGGGTCTTTGTCGTGTCCTACGGCGTCCTGGTCGGCGTCATCAGTCG
ACGCATCCTGATCGACAACATCAGCCGTCTCAACCAGGAGTCTCAAGCGG
GGCACCCCCCCTTGCTCTTCAACGCCTCGCGCGCCCAGCTCACCGCCCAG
ACCTCGCTCCCCTCCCTCCGCCGGCGGCAGAACAGCATCACCCGCCAACG
CTCCAACCAGTCCTCCTATGTATCCTCCCACTCCTCTGGGAACGACGGTG
CCACGTCCGTCGGTCCCTTAAGGTGGGTGAAAGAACGCCTGGGTAGCGCG
GGAAAAAAGCGGGAGGCAGTGGGGAAGGAAAGGCAGAAGCCGGAGAAGGA
GGGGCAATGAGAGGGAGACGGAAGGAGTTCGGGGCGTCGCGTCGACGGTG
TTTGGTGGGCCAGGGGCCAGAAGGACGAAGGCGTGGTGAGGAGGCGATGT
TCGGAGACTCAAGGTGGGGGGGGAGGGGGCGGAGGGCCGAGATATGGAGG
AATGGGCCGTGTGCCGAGAAAGGGAGGCGTTCGGGATGGAGAAAGCTCGG
CGGACGATGCGACAATACCCCTGAATGTGCAAAGTGTGCGCGCAGACAAG
ACCTAGATTGCCACGCAGATGGTCATAGAGGAGTATTGGGAGGGTCGATG
TGATTCAGTCCCATGCCGAAGCGGCGATGATCGAGAGGCAGGCGCTGCGG
GAGCGTGTGTCTTGGCCCCTGAGATTCGATGGGCGGTTGATTTGCAGTGT
TTAAATTTACAAAATTGAAAGTTGCGTCATATCCTTAAAATTAAATTGAA
ATAAAAGCAGAAATAAAAGCAATCTCTCCGACTTTCAATGCTGCGAGCTG
TCGCTTGACGAGCTGTCGCTGAGA
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protein sequence of rna1724

>rna1724-protein ID=rna1724-protein|Name=rna1724|organism=Nannochloropsis gaditana|type=polypeptide|length=209bp
PPSFPPSSLPPSLPPSLRHEPAVARRRLHVPLPRGRGPWSALRAWLPSHL
PEGRGEGGAEGGREGGVGHLSPRRRLTGARREASSPRARPPPLALKKSLA
PVPVPVPSPSPSLLPSLRRSHNNAVNCRVQGDVSRRSLCNSPSPGHSATF
ILTSLLAPSPSLPSSRPPSRPPALPPSAFEFRVASFALCGGSSLGRSLHA
YYLQRRHRP
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mRNA from alignment at CM002457.1:1340551..1341397-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1724 ID=rna1724|Name=rna1724|organism=Nannochloropsis gaditana|type=mRNA|length=847bp|location=Sequence derived from alignment at CM002457.1:1340551..1341397- (Nannochloropsis gaditana)
CCTCCCTCCTTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CAGACACGAACCTGCAGTTGCCCGCCGGAGACTTCATGTGCCTCTTCCTC
GTGGGCGCGGCCCTTGGTCGGCTCTTCGGGCATGGCTTCCAAGCCATCTT
CCCGAGGGTAGGGGGGAGGGAGGGGCCGAGGGAGGGAGGGAGGGAGGGGT
TGGACATTTGTCGCCACGCCGGCGTTTGACGGGAGCTCGCAGAGAGGCTT
CCTCGCCTAGAGCTCGACCTCCCCCACTGGCTTTGAAAAAGTCTTTGGCT
CCCGTTCCTGTTCCTGTTCCTTCCCCTTCTCCCTCCCTCCTTCCTTCTCT
CCGACGCTCTCACAACAACGCTGTCAATTGTCGTGTACAGGGCGATGTAT
CCCGACGGTCCCTTTGTAATTCCCCTTCCCCCGGTCACTCTGCAACCTTT
ATTCTCACCTCTCTGCTTGCTCCCTCCCCCTCCCTCCCTTCCTCCCGCCC
TCCTTCCCGCCCTCCCGCCCTCCCTCCCTCAGCATTTGAATTCCGAGTCG
CCTCCTTTGCCCTGTGTGGGGGCAGCAGCCTTGGCAGGAGCCTCCACGCA
TACTATCTCCAGCGGCGTCATCGCCCTTGAGCTGACAGGTAGGGAAGGAA
GGAGGGAGGGAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGCATTCC
GGTTCCTGACTGCCCCCGGCCCACGTGCATGGACAGGCGAGTACCACCAA
CAGCTCCCGATTTTCCTGAGCGTCCTGGCGGCATACACGATGTCCCGCGG
CCTCTCTCAGTCCATCTACGACGCCTTGATCCTGGTCTGTTCCCTCC
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Coding sequence (CDS) from alignment at CM002457.1:1340551..1341397-

>rna1724 ID=rna1724|Name=rna1724|organism=Nannochloropsis gaditana|type=CDS|length=630bp|location=Sequence derived from alignment at CM002457.1:1340551..1341397- (Nannochloropsis gaditana)
CCTCCCTCCTTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CAGACACGAACCTGCAGTTGCCCGCCGGAGACTTCATGTGCCTCTTCCTC
GTGGGCGCGGCCCTTGGTCGGCTCTTCGGGCATGGCTTCCAAGCCATCTT
CCCGAGGGTAGGGGGGAGGGAGGGGCCGAGGGAGGGAGGGAGGGAGGGGT
TGGACATTTGTCGCCACGCCGGCGTTTGACGGGAGCTCGCAGAGAGGCTT
CCTCGCCTAGAGCTCGACCTCCCCCACTGGCTTTGAAAAAGTCTTTGGCT
CCCGTTCCTGTTCCTGTTCCTTCCCCTTCTCCCTCCCTCCTTCCTTCTCT
CCGACGCTCTCACAACAACGCTGTCAATTGTCGTGTACAGGGCGATGTAT
CCCGACGGTCCCTTTGTAATTCCCCTTCCCCCGGTCACTCTGCAACCTTT
ATTCTCACCTCTCTGCTTGCTCCCTCCCCCTCCCTCCCTTCCTCCCGCCC
TCCTTCCCGCCCTCCCGCCCTCCCTCCCTCAGCATTTGAATTCCGAGTCG
CCTCCTTTGCCCTGTGTGGGGGCAGCAGCCTTGGCAGGAGCCTCCACGCA
TACTATCTCCAGCGGCGTCATCGCCCTTGA
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Synonyms
Publications