rna1722, rna1722 (mRNA) Nannochloropsis gaditana

Overview
Namerna1722
Unique Namerna1722
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length569
Alignment locationCM002457.1:1337014..1337660 +

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Properties
Property NameValue
Productchaperone protein
Orig transcript idgnl|cribi|Naga_101130g1.7018.mrna
Orig protein idgnl|cribi|Naga_101130g1.7018
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1337014..1337660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101130g1gene1656Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1722rna1722-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28954.1cds1718Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1722 ID=rna1722|Name=rna1722|organism=Nannochloropsis gaditana|type=mRNA|length=569bp
TATTAGACTTAATACTGCGATGGCTTCCATATCCGTTCCACGAACTTAAA
TCACCAAACCTAGTTGGTTACGCCACGTACCTCCTGCCTCCACAATCACA
GGACCGAATGCGGGCCGCCTTAGTTGCCACAAAGGCAGTGGCAAGAGGAA
TTGAATGTAGTGGTAGCAGAGCTCTGTGCTCTAATAGCCAGGGTGTGGCT
GGTCGGTCACTCGTATCGGGAAGCGGAGGAAACGGAGGAGTGAGGCGTTC
CCGGTGGGAGTCAACGAGGCATCTTTGCGGGAGTGCGCCCAGTCCCAGTG
TGAAGAAAGGGAAAATAGTTTTGAATGGTAGCGTCACAAGATTCTGGGGA
GTGCAGTGTGGACAGCAGCATTCGCGGGGGACCTTGCACTGTAGGGCCTT
CCACTCGTCCACCCGCTGTGCCCTCGCCGCCAAGAAGGACTTTTATGAGG
TGCTGGGCGTGCCGCGAGGCGCTAGCAAGGCGGACGTGAAGAAGAAGTAT
TTCGAGCTTGCGAAGAAATACCATCCGGTAAAGGAGGGAGGGAGGGAGGG
AGGGAGAGGGGGAGGAGGT
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protein sequence of rna1722

>rna1722-protein ID=rna1722-protein|Name=rna1722|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQ
KELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYL
GKEKEKEKEKEKKSKEKKKSSASA
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mRNA from alignment at CM002457.1:1337014..1337660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1722 ID=rna1722|Name=rna1722|organism=Nannochloropsis gaditana|type=mRNA|length=647bp|location=Sequence derived from alignment at CM002457.1:1337014..1337660+ (Nannochloropsis gaditana)
TTGGGTTCGAAGCTCGACGTGCTCACCCTGGATGGGATGGTAGAGCTCAC
AGTGCCAGCTGGGATTCAGCACGACACCATGCTGGTCATGCGGGGCAGGG
GTGTGCGGGAACTTCAggtagaggggagggcgggagggaggggggaagaa
gtggTAGGTGGCGGTGAGGATGGTATCGGTGGGAATGAAGGCGGAGACTC
AGGATTCGAATCGAcctctccccgtctttctttccctccttcccgccctc
cctctcttcctcccgccgttAGGGGTCCCGACGGGGCAATCAGATCGTCC
ACGTCAAGATCGAGATTCCCAAGACGCTGAGCAGCAAGCAGAAGGAACTG
ATGCAAGCtttccaggaggaggaggagaagaagaaggcaggaggtcgggg
agggggaggctgctcctcttcgtcctcctttttcacgGGCGGGTTCCAGG
GGAGGGTAAAGGAGGCGTATGCGCGCATCAAGGAGTatttggggaaggag
aaggagaaggagaaggagaaggagaagaagtccaaggaaaagaaaaaaag
cagCGCAAGCGCATGAATGATGATGGAAGGGCCAGAGGGATTCCAGAAGA
TAAGGGCAATTTCGTAAAGCAATCCAATTTTGACGGTCGGTCAAGGA
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Coding sequence (CDS) from alignment at CM002457.1:1337014..1337660+

>rna1722 ID=rna1722|Name=rna1722|organism=Nannochloropsis gaditana|type=CDS|length=750bp|location=Sequence derived from alignment at CM002457.1:1337014..1337660+ (Nannochloropsis gaditana)
ATGGTAGAGCTCACAGTGCCAGCTGGGATTCAGCACGACACCATGCTGGT
CATGCGGGGCAGGGGTGTGCGGGAACTTCAgGGGTCCCGACGGGGCAATC
AGATCGTCCACGTCAAGATCGAGATTCCCAAGACGCTGAGCAGCAAGCAG
AAGGAACTGATGCAAGCtttccaggaggaggaggagaagaagaaggcagg
aggtcggggagggggaggctgctcctcttcgtcctcctttttcacgGGCG
GGTTCCAGGGGAGGGTAAAGGAGGCGTATGCGCGCATCAAGGAGTatttg
gggaaggagaaggagaaggagaaggagaaggagaagaagtccaaggaaaa
gaaaaaaagcagCGCAAGCGCATGAATGGTAGAGCTCACAGTGCCAGCTG
GGATTCAGCACGACACCATGCTGGTCATGCGGGGCAGGGGTGTGCGGGAA
CTTCAgGGGTCCCGACGGGGCAATCAGATCGTCCACGTCAAGATCGAGAT
TCCCAAGACGCTGAGCAGCAAGCAGAAGGAACTGATGCAAGCtttccagg
aggaggaggagaagaagaaggcaggaggtcggggagggggaggctgctcc
tcttcgtcctcctttttcacgGGCGGGTTCCAGGGGAGGGTAAAGGAGGC
GTATGCGCGCATCAAGGAGTatttggggaaggagaaggagaaggagaagg
agaaggagaagaagtccaaggaaaagaaaaaaagcagCGCAAGCGCATGA
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Synonyms
Publications