EWM28954.1, cds1718 (CDS) Nannochloropsis gaditana

Overview
NameEWM28954.1
Unique Namecds1718
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1337050..1337130 +
Alignment locationCM002457.1:1337286..1337579 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28954.1
Productchaperone protein
Orig transcript idgnl|cribi|Naga_101130g1.7018.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1337050..1337130 +
CM002457.1supercontigCM002457.1:1337286..1337579 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0051082unfolded protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008971HSP40/DnaJ_pept-bd
IPR002939DnaJ_C
Homology
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|585111432|gb|EWM28954.1| (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 243.432 bits (620), Expect = 1.950e-81
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:    1 MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKEKEKKSKEKKKSSASA 124
            MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKEKEKKSKEKKKSSASA
Sbjct:    1 MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKEKEKKSKEKKKSSASA 124          
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|553192458|ref|XP_005855575.1| (chaperone protein [Nannochloropsis gaditana CCMP526] >gi|422293490|gb|EKU20790.1| chaperone protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.343 bits (599), Expect = 3.045e-78
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0
Query:    1 MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKEKEKKSKEKKKSSASA 124
            MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLG  KEKEKEKEKKSKEKKKSSASA
Sbjct:    1 MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLG--KEKEKEKEKKSKEKKKSSASA 122          
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|813143392|ref|XP_012199641.1| (chaperone DnaJ [Saprolegnia parasitica CBS 223.65] >gi|641535674|gb|KDO29577.1| chaperone DnaJ [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 82.8037 bits (203), Expect = 4.521e-16
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 0
Query:    2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEK 108
            VE+T+P G Q  T L MRG+G++EL  SRRG+Q+V + + IP TLS++QKELM+ F +EE+ +   G         SS  T  F   V++   RIK +L  + + EK
Sbjct:  326 VEMTIPKGTQSGTTLKMRGKGIKELNSSRRGSQLVTMNVHIPDTLSARQKELMEEFAKEEQLRSEAGE--------SSCKTHTFAETVQKTVDRIKAFLKPKDDDEK 424          
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|1173952982|gb|OQS00554.1| (chaperone protein dnaJ [Achlya hypogyna])

HSP 1 Score: 82.4185 bits (202), Expect = 5.621e-16
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 0
Query:    2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEK 106
            VE+T+P G Q  T L MRG+G++EL  +RRG+Q+V + + IP TLS++QKELM+ F +EEE +  G  G   C S +      F   V++   RIK++L  ++ K
Sbjct:  333 VEMTIPKGTQSGTTLKMRGKGIKELNSTRRGSQLVTMNVHIPDTLSARQKELMEEFAKEEEAR--GVAGESSCKSHT------FSETVQKTVDRIKQFLKPDEPK 429          
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|1210521242|dbj|GAX19990.1| (curved DNA-binding protein [Fistulifera solaris])

HSP 1 Score: 81.6481 bits (200), Expect = 1.032e-15
Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = 0
Query:    2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSF 80
            VE+ +P G Q DT L++RG+G++EL+G+R+GNQ+VH+K++IPK +S +Q+EL++ F EE  K   G  G    ++ S+F
Sbjct:  286 VEVKIPKGCQPDTKLMLRGKGIQELRGTRKGNQVVHLKLQIPKEISPRQEELLREFDEETSKHDLGISGRIAHAAESAF 364          
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|1210527009|dbj|GAX14336.1| (DnaJ homolog subfamily A member 3 [Fistulifera solaris])

HSP 1 Score: 81.6481 bits (200), Expect = 1.045e-15
Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = 0
Query:    2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSF 80
            VE+ +P G Q DT L++RG+G++EL+G+R+GNQ+VH+K++IPK +S +Q+EL++ F EE  K   G  G    ++ S+F
Sbjct:  313 VEVKIPKGCQPDTKLMLRGKGIQELRGTRKGNQVVHLKLQIPKEISPRQEELLREFDEETSKHDLGISGRIAHAAESAF 391          
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|669144154|ref|XP_008607639.1| (hypothetical protein SDRG_03774 [Saprolegnia diclina VS20] >gi|530740573|gb|EQC38815.1| hypothetical protein SDRG_03774 [Saprolegnia diclina VS20])

HSP 1 Score: 81.2629 bits (199), Expect = 1.365e-15
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 0
Query:    2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKE 109
            VE+T+P G Q  T L MRG+G++EL  SRRG+Q+V + + IP TLS++QKELM+ F +EE+ +   G         SS  T  F   V++   RIK +L  ++ K+ E
Sbjct:  326 VEMTIPKGTQSGTTLKMRGKGIKELNSSRRGSQLVTMNVHIPDTLSARQKELMEEFAKEEQLRGEAGE--------SSCKTHSFAETVQKTVDRIKAFLKPKEAKQDE 425          
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|698814574|ref|XP_009840316.1| (chaperone DnaJ [Aphanomyces astaci] >gi|574104690|gb|ETV70219.1| chaperone DnaJ [Aphanomyces astaci])

HSP 1 Score: 80.4925 bits (197), Expect = 2.568e-15
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 0
Query:    2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYL 100
            VE+T+P G Q  T L MRG+G++EL  SRRG+Q+V + + +P TLS +QKELM+ F  EE+  + G  G   C S +      F   V+    RIK+++
Sbjct:  365 VEMTIPKGTQPGTTLKMRGKGIKELNSSRRGSQLVTLNVHVPDTLSDRQKELMEEFATEEQ--RLGETGQSSCKSHT------FADTVRSTVDRIKQFI 455          
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|325180642|emb|CCA15047.1| (chaperone protein dnaJ putative [Albugo laibachii Nc14])

HSP 1 Score: 78.5666 bits (192), Expect = 1.444e-14
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 0
Query:    2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGK 102
            VE+ +P G+Q +T++ MRG+GV+EL  SRRG+Q+V++++ +P +L+ KQ+EL++ F +EEE+    G        +S+  T  F   V+E   RI++++ K
Sbjct:  365 VEMKIPRGVQPNTVMQMRGKGVKELNSSRRGSQLVNLQVHVPSSLTPKQEELLKEFMKEEEQVANSG--------NSTAKTHTFAATVQETMKRIRDFIKK 457          
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|813226741|ref|XP_012212447.1| (hypothetical protein SPRG_17671 [Saprolegnia parasitica CBS 223.65] >gi|641520949|gb|KDO16843.1| hypothetical protein SPRG_17671 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 75.485 bits (184), Expect = 7.012e-14
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGG 68
            VE+T+P G Q  T L MRG+G++EL  SRRG+Q+V + + IP TLS++QKELM+ F +EE+ +   G
Sbjct:  194 VEMTIPKGTQSGTTLKMRGKGIKELNSSRRGSQLVTMNVHIPDTLSARQKELMEEFAKEEQLRSEAG 260          
The following BLAST results are available for this feature:
BLAST of EWM28954.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111432|gb|EWM28954.1|1.950e-81100.00chaperone protein [Nannochloropsis gaditana][more]
gi|553192458|ref|XP_005855575.1|3.045e-7898.39chaperone protein [Nannochloropsis gaditana CCMP52... [more]
gi|813143392|ref|XP_012199641.1|4.521e-1642.06chaperone DnaJ [Saprolegnia parasitica CBS 223.65]... [more]
gi|1173952982|gb|OQS00554.1|5.621e-1641.90chaperone protein dnaJ [Achlya hypogyna][more]
gi|1210521242|dbj|GAX19990.1|1.032e-1545.57curved DNA-binding protein [Fistulifera solaris][more]
gi|1210527009|dbj|GAX14336.1|1.045e-1545.57DnaJ homolog subfamily A member 3 [Fistulifera sol... [more]
gi|669144154|ref|XP_008607639.1|1.365e-1541.67hypothetical protein SDRG_03774 [Saprolegnia dicli... [more]
gi|698814574|ref|XP_009840316.1|2.568e-1541.41chaperone DnaJ [Aphanomyces astaci] >gi|574104690|... [more]
gi|325180642|emb|CCA15047.1|1.444e-1437.62chaperone protein dnaJ putative [Albugo laibachii ... [more]
gi|813226741|ref|XP_012212447.1|7.012e-1450.75hypothetical protein SPRG_17671 [Saprolegnia paras... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1722rna1722Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications