EWM28954.1, cds1718 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|585111432|gb|EWM28954.1| (chaperone protein [Nannochloropsis gaditana]) HSP 1 Score: 243.432 bits (620), Expect = 1.950e-81 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKEKEKKSKEKKKSSASA 124
MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKEKEKKSKEKKKSSASA
Sbjct: 1 MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKEKEKKSKEKKKSSASA 124
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|553192458|ref|XP_005855575.1| (chaperone protein [Nannochloropsis gaditana CCMP526] >gi|422293490|gb|EKU20790.1| chaperone protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 235.343 bits (599), Expect = 3.045e-78 Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0
Query: 1 MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKEKEKKSKEKKKSSASA 124
MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLG KEKEKEKEKKSKEKKKSSASA
Sbjct: 1 MVELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLG--KEKEKEKEKKSKEKKKSSASA 122
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|813143392|ref|XP_012199641.1| (chaperone DnaJ [Saprolegnia parasitica CBS 223.65] >gi|641535674|gb|KDO29577.1| chaperone DnaJ [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 82.8037 bits (203), Expect = 4.521e-16 Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 0
Query: 2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEK 108
VE+T+P G Q T L MRG+G++EL SRRG+Q+V + + IP TLS++QKELM+ F +EE+ + G SS T F V++ RIK +L + + EK
Sbjct: 326 VEMTIPKGTQSGTTLKMRGKGIKELNSSRRGSQLVTMNVHIPDTLSARQKELMEEFAKEEQLRSEAGE--------SSCKTHTFAETVQKTVDRIKAFLKPKDDDEK 424
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|1173952982|gb|OQS00554.1| (chaperone protein dnaJ [Achlya hypogyna]) HSP 1 Score: 82.4185 bits (202), Expect = 5.621e-16 Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 0
Query: 2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEK 106
VE+T+P G Q T L MRG+G++EL +RRG+Q+V + + IP TLS++QKELM+ F +EEE + G G C S + F V++ RIK++L ++ K
Sbjct: 333 VEMTIPKGTQSGTTLKMRGKGIKELNSTRRGSQLVTMNVHIPDTLSARQKELMEEFAKEEEAR--GVAGESSCKSHT------FSETVQKTVDRIKQFLKPDEPK 429
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|1210521242|dbj|GAX19990.1| (curved DNA-binding protein [Fistulifera solaris]) HSP 1 Score: 81.6481 bits (200), Expect = 1.032e-15 Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = 0
Query: 2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSF 80
VE+ +P G Q DT L++RG+G++EL+G+R+GNQ+VH+K++IPK +S +Q+EL++ F EE K G G ++ S+F
Sbjct: 286 VEVKIPKGCQPDTKLMLRGKGIQELRGTRKGNQVVHLKLQIPKEISPRQEELLREFDEETSKHDLGISGRIAHAAESAF 364
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|1210527009|dbj|GAX14336.1| (DnaJ homolog subfamily A member 3 [Fistulifera solaris]) HSP 1 Score: 81.6481 bits (200), Expect = 1.045e-15 Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = 0
Query: 2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSF 80
VE+ +P G Q DT L++RG+G++EL+G+R+GNQ+VH+K++IPK +S +Q+EL++ F EE K G G ++ S+F
Sbjct: 313 VEVKIPKGCQPDTKLMLRGKGIQELRGTRKGNQVVHLKLQIPKEISPRQEELLREFDEETSKHDLGISGRIAHAAESAF 391
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|669144154|ref|XP_008607639.1| (hypothetical protein SDRG_03774 [Saprolegnia diclina VS20] >gi|530740573|gb|EQC38815.1| hypothetical protein SDRG_03774 [Saprolegnia diclina VS20]) HSP 1 Score: 81.2629 bits (199), Expect = 1.365e-15 Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 0
Query: 2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGKEKEKEKE 109
VE+T+P G Q T L MRG+G++EL SRRG+Q+V + + IP TLS++QKELM+ F +EE+ + G SS T F V++ RIK +L ++ K+ E
Sbjct: 326 VEMTIPKGTQSGTTLKMRGKGIKELNSSRRGSQLVTMNVHIPDTLSARQKELMEEFAKEEQLRGEAGE--------SSCKTHSFAETVQKTVDRIKAFLKPKEAKQDE 425
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|698814574|ref|XP_009840316.1| (chaperone DnaJ [Aphanomyces astaci] >gi|574104690|gb|ETV70219.1| chaperone DnaJ [Aphanomyces astaci]) HSP 1 Score: 80.4925 bits (197), Expect = 2.568e-15 Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 0
Query: 2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYL 100
VE+T+P G Q T L MRG+G++EL SRRG+Q+V + + +P TLS +QKELM+ F EE+ + G G C S + F V+ RIK+++
Sbjct: 365 VEMTIPKGTQPGTTLKMRGKGIKELNSSRRGSQLVTLNVHVPDTLSDRQKELMEEFATEEQ--RLGETGQSSCKSHT------FADTVRSTVDRIKQFI 455
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|325180642|emb|CCA15047.1| (chaperone protein dnaJ putative [Albugo laibachii Nc14]) HSP 1 Score: 78.5666 bits (192), Expect = 1.444e-14 Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 0
Query: 2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGGRGGGGCSSSSSFFTGGFQGRVKEAYARIKEYLGK 102
VE+ +P G+Q +T++ MRG+GV+EL SRRG+Q+V++++ +P +L+ KQ+EL++ F +EEE+ G +S+ T F V+E RI++++ K
Sbjct: 365 VEMKIPRGVQPNTVMQMRGKGVKELNSSRRGSQLVNLQVHVPSSLTPKQEELLKEFMKEEEQVANSG--------NSTAKTHTFAATVQETMKRIRDFIKK 457
BLAST of EWM28954.1 vs. NCBI_GenBank
Match: gi|813226741|ref|XP_012212447.1| (hypothetical protein SPRG_17671 [Saprolegnia parasitica CBS 223.65] >gi|641520949|gb|KDO16843.1| hypothetical protein SPRG_17671 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 75.485 bits (184), Expect = 7.012e-14 Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 0
Query: 2 VELTVPAGIQHDTMLVMRGRGVRELQGSRRGNQIVHVKIEIPKTLSSKQKELMQAFQEEEEKKKAGG 68
VE+T+P G Q T L MRG+G++EL SRRG+Q+V + + IP TLS++QKELM+ F +EE+ + G
Sbjct: 194 VEMTIPKGTQSGTTLKMRGKGIKELNSSRRGSQLVTMNVHIPDTLSARQKELMEEFAKEEQLRSEAG 260 The following BLAST results are available for this feature:
BLAST of EWM28954.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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