rna1721, rna1721 (mRNA) Nannochloropsis gaditana

Overview
Namerna1721
Unique Namerna1721
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1257
Alignment locationCM002457.1:1336175..1336912 +

Link to JBrowse

Properties
Property NameValue
Productdnaj subfamily protein
Orig transcript idgnl|cribi|Naga_100308g1.5016.mrna
Orig protein idgnl|cribi|Naga_100308g1.5016
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1336175..1336912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100308g1gene1655Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1721rna1721-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28956.1cds1717Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1721 ID=rna1721|Name=rna1721|organism=Nannochloropsis gaditana|type=mRNA|length=1257bp
TTGGCTATGAATGGCAGATAACGCGCGAGGCTGCCACTGTGGGATTCCGT
CGCCCTACATTCCTTCTCGTTACCGCTTACGAGCACATGCTCAGCCAAAT
GCACATTGTATCTGACCCGTCAGCGGCAACTTTCTCTGCTTACGTCTCTT
ATATCATTTGCGATACATACAGGCGTAAATCTATAGTCTGTGAACTTCGC
AACAATGCCTTTCGTCAAGGTTCTTAAGAATAAGCAATATTTTAAGCGGT
ACCAGACCAAGTTCCGTCGTCGTCGTGAGGGCAAGACGGACTACCGGGCC
CGCAAGCGCATGGTGGCGCAGGACAAGAATAAGTACAACACGCCCAAATA
CCGCCTGGTGGTGCGTTTCACGAACCGCTACTGCATCGCACAAATTGTCT
ACGCCACGATTGACGGGGACAAGGTCCTGGCCGCCGCCAACTCGAAGGAG
CTCGCTCGCTATGGACTTAAGGTCGGTCTGAAGAACTACGCCGCCGCCTA
CTGCACAGGTCTCCTCATCGCACGCAGGCTCCTCAACAAGCTGGGCTTGG
ATGAGGCCTACGAGGGGGTGGACGAGCCTGACGGCGAGATAGCGACCACC
AAGGACGAGACCAACGGGCGCACCTACTACGTCCCCGAGCTCAACGATGA
GAAGAAACCTTTTCGCGCCATTTTGGATGTAGGCATCCAGACCACTACGA
CCGGCAACCGCATCTTCGGCGTCCTCAAGGGCGCCTCGGATGGCGGCCTG
GACATTCCTCAGTCGGAGAAGCGCTTCCCGGGGTACGACCGTGACGGCAA
GCGGTACGATGCGGACAGCCACAAGGAGCGCATTATGGGCGAGCATGTGG
CTGACTATATCAACTACCTGGTGGAGGAGGACCACGAGGCGTACGAACGG
CAGTTTGCCAACTATATCAAGCACGGTGTCTCCGGAGATGATTATCAGGA
CTTGCTCGAGGAGGTGCATACTGCTATCCGCGAAGACCCGACCGCCGCGC
CCAAGACGGAATGGGAGGGAGATCGCACGAAGTACAAGCGTCAGGGAAAG
CTTTCTTACGAAGAGCGCAAGTCTCGCGTGGCTGAGAAGAAATTGGCCAT
GGCGGCAGCTGCTGGTGATGCCGATGAAATGGAGGAGGAAGAGGAGGAAG
AGTAACCATGGCATTGAATTGGGAGGGGTTGAAATTTGCACGGGTGACAA
CTCTTGGTTCCGCTTTTCAAGAGAAAAAAGTTGAATCAGCGTATGCTGCC
AGGAAAG
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protein sequence of rna1721

>rna1721-protein ID=rna1721-protein|Name=rna1721|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRW
ESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHS
STRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHPVKEGGREGGR
GGGG
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mRNA from alignment at CM002457.1:1336175..1336912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1721 ID=rna1721|Name=rna1721|organism=Nannochloropsis gaditana|type=mRNA|length=738bp|location=Sequence derived from alignment at CM002457.1:1336175..1336912+ (Nannochloropsis gaditana)
TATTAGACTTAATACTGCGATGGCTTCCATATCCGTTCCACGAACTTAAA
TCACCAAACCTAGTTGGTTACGCCACgtacctcctgcctccacaaTCACA
GGACCGAATGCGGGCCGCCTTAGTTGCCACAAAGGCAGTGGCAAGAGGAA
TTGAATGTAGTGGTAGCAGAGCTCTGTGCTCTAATAGCCAGGGTGTGGCT
GGTCGGTCACTCGTAtcgggaagcggaggaaacggaggagTGAGGCGTTC
CCGGTGGGAGTCAACGAGGCATCTTTGCGGGAGTGCGCCCAGTCCCAGtg
tgaagaaagggaaaataGTTTTGAATGGTAGCGTCACAAGATTCTGGGGA
GTGCAGTGTGGACAGCAGCATTCGCGGGGGTGAGTGTTTAATACAGCCAT
TCAACAGCAGAAGTGTTTTTAACGGGCGATACATGTTTTTCTACGTTCTT
TCTAGAGAGCAGCATGACGACCGTGCATTCGGCTCGACCGCCACCTCATT
CTCTGCCCCTGATCCCTCCCCGGTTTATTTATTTGTCCATTGCTCTAGGA
CCTTGCACTGTAGGGCCTTCCACTCGTCCACCCGCTGTGCCCTCGCCGCC
AAGAAGGACTTTTATGAGGTGCTGGGCGTGCCGCGAGGCGCTAGCAAGGC
GGACGTGAAGAAGAAGTATTTCGAGCTTGCGAAGAAATACCATCCggtaa
aggagggagggagggagggagggagagggggaggaggt
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Coding sequence (CDS) from alignment at CM002457.1:1336175..1336912+

>rna1721 ID=rna1721|Name=rna1721|organism=Nannochloropsis gaditana|type=CDS|length=924bp|location=Sequence derived from alignment at CM002457.1:1336175..1336912+ (Nannochloropsis gaditana)
ATGCGGGCCGCCTTAGTTGCCACAAAGGCAGTGGCAAGAGGAATTGAATG
TAGTGGTAGCAGAGCTCTGTGCTCTAATAGCCAGGGTGTGGCTGGTCGGT
CACTCGTAtcgggaagcggaggaaacggaggagTGAGGCGTTCCCGGTGG
GAGTCAACGAGGCATCTTTGCGGGAGTGCGCCCAGTCCCAGtgtgaagaa
agggaaaataGTTTTGAATGGTAGCGTCACAAGATTCTGGGGAGTGCAGT
GTGGACAGCAGCATTCGCGGGGGACCTTGCACTGTAGGGCCTTCCACTCG
TCCACCCGCTGTGCCCTCGCCGCCAAGAAGGACTTTTATGAGGTGCTGGG
CGTGCCGCGAGGCGCTAGCAAGGCGGACGTGAAGAAGAAGTATTTCGAGC
TTGCGAAGAAATACCATCCggtaaaggagggagggagggagggagggaga
gggggaggaggtATGCGGGCCGCCTTAGTTGCCACAAAGGCAGTGGCAAG
AGGAATTGAATGTAGTGGTAGCAGAGCTCTGTGCTCTAATAGCCAGGGTG
TGGCTGGTCGGTCACTCGTAtcgggaagcggaggaaacggaggagTGAGG
CGTTCCCGGTGGGAGTCAACGAGGCATCTTTGCGGGAGTGCGCCCAGTCC
CAGtgtgaagaaagggaaaataGTTTTGAATGGTAGCGTCACAAGATTCT
GGGGAGTGCAGTGTGGACAGCAGCATTCGCGGGGGACCTTGCACTGTAGG
GCCTTCCACTCGTCCACCCGCTGTGCCCTCGCCGCCAAGAAGGACTTTTA
TGAGGTGCTGGGCGTGCCGCGAGGCGCTAGCAAGGCGGACGTGAAGAAGA
AGTATTTCGAGCTTGCGAAGAAATACCATCCggtaaaggagggagggagg
gagggagggagagggggaggaggt
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Synonyms
Publications