EWM28956.1, cds1717 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|585111435|gb|EWM28956.1| (dnaj subfamily protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 307.76 bits (787), Expect = 7.673e-106 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query: 1 MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHPVKEGGREGGRGGGG 154
MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHPVKEGGREGGRGGGG
Sbjct: 1 MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHPVKEGGREGGRGGGG 154
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|553192454|ref|XP_005855574.1| (hypothetical protein NGA_0607700 [Nannochloropsis gaditana CCMP526] >gi|422293489|gb|EKU20789.1| hypothetical protein NGA_0607700 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 178.718 bits (452), Expect = 1.163e-55 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
Query: 1 MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSR 90
MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSR
Sbjct: 1 MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSR 90
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|657556900|ref|XP_008282705.1| (PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial-like [Stegastes partitus]) HSP 1 Score: 70.0922 bits (170), Expect = 3.133e-11 Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0
Query: 81 GVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
GV+C RG + C AFHSS+R LA K+DFYEVLGV R AS+ D+KK Y++LAKKYHP
Sbjct: 69 GVRC----PRG-ITCHAFHSSSR--LANKQDFYEVLGVSRTASQKDIKKAYYQLAKKYHP 121
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|695426477|ref|XP_009529430.1| (hypothetical protein PHYSODRAFT_260708, partial [Phytophthora sojae] >gi|348675863|gb|EGZ15681.1| hypothetical protein PHYSODRAFT_260708, partial [Phytophthora sojae]) HSP 1 Score: 69.707 bits (169), Expect = 4.696e-11 Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 0
Query: 94 HCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
HC FHS+ K+DFY+VLGV R ASK D+KKKY++LAKKYHP
Sbjct: 36 HCAPFHSTRAAMEPTKRDFYDVLGVSRDASKNDIKKKYYQLAKKYHP 82
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|432847668|ref|XP_004066111.1| (dnaJ homolog subfamily A member 3, mitochondrial-like isoform X2 [Oryzias latipes]) HSP 1 Score: 69.3218 bits (168), Expect = 7.374e-11 Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 0
Query: 3 AALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGV-RRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
A AT+ AR + S S S V GR L S NGGV + + W++ R + S S +G +V ++TR G C + C +FHSS+ LA K+DFYEVLGV R AS+ D+KK Y++LAKKYHP
Sbjct: 2 ACAAATRLTARWLASSPS------SGCVNGRFLCI-SPRNGGVCKAAVWQANRRGIVVSFS-SFARGNVV---TLTRVTGGTCPR-----VTTCHSFHSSS--ILANKQDFYEVLGVSRSASQKDIKKAYYQLAKKYHP 122
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|765112356|ref|XP_011476532.1| (dnaJ homolog subfamily A member 3, mitochondrial-like isoform X1 [Oryzias latipes]) HSP 1 Score: 68.9366 bits (167), Expect = 7.894e-11 Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 0
Query: 3 AALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGV-RRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
A AT+ AR + S S S V GR L S NGGV + + W++ R + S S +G +V ++TR G C + C +FHSS+ LA K+DFYEVLGV R AS+ D+KK Y++LAKKYHP
Sbjct: 2 ACAAATRLTARWLASSPS------SGCVNGRFLCI-SPRNGGVCKAAVWQANRRGIVVSFS-SFARGNVV---TLTRVTGGTCPR-----VTTCHSFHSSS--ILANKQDFYEVLGVSRSASQKDIKKAYYQLAKKYHP 122
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|299471551|emb|CBN80037.1| (Heat shock protein 40 [Ectocarpus siliculosus]) HSP 1 Score: 68.9366 bits (167), Expect = 9.479e-11 Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = 0
Query: 11 VARGIECSGSR--ALCSNSQGVAGRSLVSGSGGNGGVRRS--------RWESTRHLCGSAPSPSVKKGKIVLNGSVT-----RFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
+ R + SG+R A+ S + AG LV+ G NG + R+ R + R + G S+ + + L GS F GV+C R FHS TR A K+DFY+VLGV +GA K++VKKKYF+LAKKYHP
Sbjct: 6 LGRAVLASGARDSAVASLPRRAAG--LVASKGCNGMLSRAPAAANQSLRTNAARSVAGGLTGDSILRPEGSLGGSYNGGSPKLFGGVRC--------TPARQFHS-TRPA--EKRDFYDVLGVAKGADKSEVKKKYFQLAKKYHP 137
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|1032151206|gb|OAO14846.1| (chaperone protein dnaJ [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 68.5514 bits (166), Expect = 1.024e-10 Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 62 SPSVKKGKIVLN--GSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHPVKEGGREGGR 150
S ++ K++L S+ + V C Q + R FH++ A + K+D+YEVLGVP+ ASKAD+KK YF+LAKKYHP G E +
Sbjct: 21 SNAILASKVILPCVSSIRAAYAVPCMQ-----GVFVRGFHNT---AASYKRDYYEVLGVPKDASKADIKKAYFKLAKKYHPDTNKGDENAK 103
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|730371079|gb|KHJ42656.1| (putative chaperone protein DnaJ [Trichuris suis]) HSP 1 Score: 67.781 bits (164), Expect = 2.473e-10 Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 0
Query: 88 HSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
H L R FH S L AKKD+YEVLG+PR AS+ D+KK Y++LAKKYHP
Sbjct: 55 HLFPELLTRTFHLSA-FVLQAKKDYYEVLGIPRNASQKDIKKAYYQLAKKYHP 106
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|390336414|ref|XP_786934.2| (PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial [Strongylocentrotus purpuratus]) HSP 1 Score: 67.3958 bits (163), Expect = 2.794e-10 Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0
Query: 86 QQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
QQH R H+ST ALA K+DFY+VLGVP+ A++ D+KK Y+E+AKKYHP
Sbjct: 70 QQHQFVHGFSRNIHTST-TALAGKRDFYQVLGVPKTATQKDIKKAYYEMAKKYHP 123 The following BLAST results are available for this feature:
BLAST of EWM28956.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|