EWM28956.1, cds1717 (CDS) Nannochloropsis gaditana

Overview
NameEWM28956.1
Unique Namecds1717
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1336282..1336553 +
Alignment locationCM002457.1:1336723..1336912 +

Link to JBrowse

Properties
Property NameValue
End range.
End range1336912
Protein idEWM28956.1
Productdnaj subfamily protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100308g1.5016.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1336282..1336553 +
CM002457.1supercontigCM002457.1:1336723..1336912 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
Homology
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|585111435|gb|EWM28956.1| (dnaj subfamily protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 307.76 bits (787), Expect = 7.673e-106
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHPVKEGGREGGRGGGG 154
            MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHPVKEGGREGGRGGGG
Sbjct:    1 MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHPVKEGGREGGRGGGG 154          
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|553192454|ref|XP_005855574.1| (hypothetical protein NGA_0607700 [Nannochloropsis gaditana CCMP526] >gi|422293489|gb|EKU20789.1| hypothetical protein NGA_0607700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 178.718 bits (452), Expect = 1.163e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
Query:    1 MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSR 90
            MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSR
Sbjct:    1 MRAALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGVRRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSR 90          
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|657556900|ref|XP_008282705.1| (PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial-like [Stegastes partitus])

HSP 1 Score: 70.0922 bits (170), Expect = 3.133e-11
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0
Query:   81 GVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
            GV+C     RG + C AFHSS+R  LA K+DFYEVLGV R AS+ D+KK Y++LAKKYHP
Sbjct:   69 GVRC----PRG-ITCHAFHSSSR--LANKQDFYEVLGVSRTASQKDIKKAYYQLAKKYHP 121          
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|695426477|ref|XP_009529430.1| (hypothetical protein PHYSODRAFT_260708, partial [Phytophthora sojae] >gi|348675863|gb|EGZ15681.1| hypothetical protein PHYSODRAFT_260708, partial [Phytophthora sojae])

HSP 1 Score: 69.707 bits (169), Expect = 4.696e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 0
Query:   94 HCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
            HC  FHS+       K+DFY+VLGV R ASK D+KKKY++LAKKYHP
Sbjct:   36 HCAPFHSTRAAMEPTKRDFYDVLGVSRDASKNDIKKKYYQLAKKYHP 82          
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|432847668|ref|XP_004066111.1| (dnaJ homolog subfamily A member 3, mitochondrial-like isoform X2 [Oryzias latipes])

HSP 1 Score: 69.3218 bits (168), Expect = 7.374e-11
Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 0
Query:    3 AALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGV-RRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
            A   AT+  AR +  S S      S  V GR L   S  NGGV + + W++ R     + S S  +G +V   ++TR  G  C +        C +FHSS+   LA K+DFYEVLGV R AS+ D+KK Y++LAKKYHP
Sbjct:    2 ACAAATRLTARWLASSPS------SGCVNGRFLCI-SPRNGGVCKAAVWQANRRGIVVSFS-SFARGNVV---TLTRVTGGTCPR-----VTTCHSFHSSS--ILANKQDFYEVLGVSRSASQKDIKKAYYQLAKKYHP 122          
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|765112356|ref|XP_011476532.1| (dnaJ homolog subfamily A member 3, mitochondrial-like isoform X1 [Oryzias latipes])

HSP 1 Score: 68.9366 bits (167), Expect = 7.894e-11
Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 0
Query:    3 AALVATKAVARGIECSGSRALCSNSQGVAGRSLVSGSGGNGGV-RRSRWESTRHLCGSAPSPSVKKGKIVLNGSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
            A   AT+  AR +  S S      S  V GR L   S  NGGV + + W++ R     + S S  +G +V   ++TR  G  C +        C +FHSS+   LA K+DFYEVLGV R AS+ D+KK Y++LAKKYHP
Sbjct:    2 ACAAATRLTARWLASSPS------SGCVNGRFLCI-SPRNGGVCKAAVWQANRRGIVVSFS-SFARGNVV---TLTRVTGGTCPR-----VTTCHSFHSSS--ILANKQDFYEVLGVSRSASQKDIKKAYYQLAKKYHP 122          
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|299471551|emb|CBN80037.1| (Heat shock protein 40 [Ectocarpus siliculosus])

HSP 1 Score: 68.9366 bits (167), Expect = 9.479e-11
Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = 0
Query:   11 VARGIECSGSR--ALCSNSQGVAGRSLVSGSGGNGGVRRS--------RWESTRHLCGSAPSPSVKKGKIVLNGSVT-----RFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
            + R +  SG+R  A+ S  +  AG  LV+  G NG + R+        R  + R + G     S+ + +  L GS        F GV+C           R FHS TR A   K+DFY+VLGV +GA K++VKKKYF+LAKKYHP
Sbjct:    6 LGRAVLASGARDSAVASLPRRAAG--LVASKGCNGMLSRAPAAANQSLRTNAARSVAGGLTGDSILRPEGSLGGSYNGGSPKLFGGVRC--------TPARQFHS-TRPA--EKRDFYDVLGVAKGADKSEVKKKYFQLAKKYHP 137          
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|1032151206|gb|OAO14846.1| (chaperone protein dnaJ [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 68.5514 bits (166), Expect = 1.024e-10
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 0
Query:   62 SPSVKKGKIVLN--GSVTRFWGVQCGQQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHPVKEGGREGGR 150
            S ++   K++L    S+   + V C Q      +  R FH++   A + K+D+YEVLGVP+ ASKAD+KK YF+LAKKYHP    G E  +
Sbjct:   21 SNAILASKVILPCVSSIRAAYAVPCMQ-----GVFVRGFHNT---AASYKRDYYEVLGVPKDASKADIKKAYFKLAKKYHPDTNKGDENAK 103          
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|730371079|gb|KHJ42656.1| (putative chaperone protein DnaJ [Trichuris suis])

HSP 1 Score: 67.781 bits (164), Expect = 2.473e-10
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 0
Query:   88 HSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
            H    L  R FH S    L AKKD+YEVLG+PR AS+ D+KK Y++LAKKYHP
Sbjct:   55 HLFPELLTRTFHLSA-FVLQAKKDYYEVLGIPRNASQKDIKKAYYQLAKKYHP 106          
BLAST of EWM28956.1 vs. NCBI_GenBank
Match: gi|390336414|ref|XP_786934.2| (PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial [Strongylocentrotus purpuratus])

HSP 1 Score: 67.3958 bits (163), Expect = 2.794e-10
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0
Query:   86 QQHSRGTLHCRAFHSSTRCALAAKKDFYEVLGVPRGASKADVKKKYFELAKKYHP 140
            QQH       R  H+ST  ALA K+DFY+VLGVP+ A++ D+KK Y+E+AKKYHP
Sbjct:   70 QQHQFVHGFSRNIHTST-TALAGKRDFYQVLGVPKTATQKDIKKAYYEMAKKYHP 123          
The following BLAST results are available for this feature:
BLAST of EWM28956.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111435|gb|EWM28956.1|7.673e-106100.00dnaj subfamily protein, partial [Nannochloropsis g... [more]
gi|553192454|ref|XP_005855574.1|1.163e-55100.00hypothetical protein NGA_0607700 [Nannochloropsis ... [more]
gi|657556900|ref|XP_008282705.1|3.133e-1161.67PREDICTED: dnaJ homolog subfamily A member 3, mito... [more]
gi|695426477|ref|XP_009529430.1|4.696e-1161.70hypothetical protein PHYSODRAFT_260708, partial [P... [more]
gi|432847668|ref|XP_004066111.1|7.374e-1141.01dnaJ homolog subfamily A member 3, mitochondrial-l... [more]
gi|765112356|ref|XP_011476532.1|7.894e-1141.01dnaJ homolog subfamily A member 3, mitochondrial-l... [more]
gi|299471551|emb|CBN80037.1|9.479e-1138.62Heat shock protein 40 [Ectocarpus siliculosus][more]
gi|1032151206|gb|OAO14846.1|1.024e-1041.76chaperone protein dnaJ [Blastocystis sp. ATCC 5017... [more]
gi|730371079|gb|KHJ42656.1|2.473e-1058.49putative chaperone protein DnaJ [Trichuris suis][more]
gi|390336414|ref|XP_786934.2|2.794e-1056.36PREDICTED: dnaJ homolog subfamily A member 3, mito... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1721rna1721Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications