|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100308g3.5019.mrna |
| Orig protein id | gnl|cribi|Naga_100308g3.5019 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1330283..1332202 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1719 ID=rna1719|Name=rna1719|organism=Nannochloropsis gaditana|type=mRNA|length=3058bp
CATGCACACTTTCCATTGTCTTTATGAATACTGCTTTTTTTCAGGAATTG
GTGCACTTAAGGCTCAATTCAAGAATTGACATCAAGTATGAATCTGGAGG
AGGAATTCTGAGGCGGCGACTTCCCTGAAGTTTAGCCTGGTGGCAACGCC
GGCCGAAGTTGGGATGGATAGACCCACACCCCCTTATGGCAGCCGTGAAA
TTAGCGGAACAGGACATGCTGAAGTTAAAGTGCGCCGTGACAAGCGGGAA
GACGGAGTCCGAGGCGCCCTTGAAACGGGGGCCTCCGCAATGGAGAAACG
TCCGCAACAAGACAGAATGCCAATAGATCCTGCAACGAAGCGTAAAATAT
GTGTTGACCACGTGTATGCCGAAGAAGGGTGTATGCGTTGGGGTTGTCCT
TTTGCGCACGTTGAAAACACGTGTGGGAGGGGAAAAGCGGGTGGTAGGAA
AAGTGGTGGGAACGAAGGCGAAGAATTCGACGCGACGCGAAGTGCAAGAC
AGGACATCAACAATGACGATCCTGGGCAACAAACAAGTATATCCACGCAC
CAGGGAATGGACACGCACAAGGAGCCTGTTTCCTCTTCCTCCCTCGTAGC
TCCCAGAGAACCCACCTCCTCCAAGCCCTCTACCCTCCCCAGAGGCGCAG
ATAAACCACGCACGGGCCTGCGGAGTGGTGGTCAGAAGTCACAAACCGGC
GAGCATACGGATAGAGGAGATCTGAGCACAGGCATAGAGGAGCAAGCGGA
GCCAAGGACGGGCGTGGCGGATGAGGGGGGTGGCGAGGAAGCGTCCGGGG
GAGTGGGGGAGGAAGAAGGAGCGTTGGTCGACAAAATTGGGGACTTGTAC
CTGAAAAAGGCGGTCGCCACGGAAAAGGAGGGAAGCGGAGATGGAGGGGG
TGGGCTGGGACCGGCAGGAGGGAGCGAGGGTGGCATATCCACAATGGAAG
CGGCCCATCCGCCCTCCTCCACGGTGACCCCGCCGCCGCCGTTCCGTCTC
GGTCCTGCCTCCCTCTCCGCTCCCCAACTTTGCCCGGGGTCCTCCTCTCG
TGCCCTCGTAAAGCAGTCGTCGGACCCAGGCGCGGTCCCGGCCTCCCTCC
CTGTGCTGGGCTCCGGTTTTCAACGCATGCCTCGAGATATCGAAACGGGC
CGGCGGATCTGCTTTTATTTCAACAATAAGGGTTGTTCCATGGGAGAGAA
GTGCGCCTTCGTACATGTCAAGGCTGACTCCTCCCTCATTACCCCGGGAA
CAGCCCAGAAGCCCCCTCCTGGCTCGGACAAGCTCTCCACTGGCCCCTCT
TTCCTCCCTCCCTCCTTCCCTCCCTCCTTCCACGCCTTCCTCCCTCCTCC
CCTCCCTCCCCACGAGGCTCGAGAAAGGAACTATCCCCGGGGCGCACGCC
GGCTTTCACCCCCTCTCCCCGCTGGTCTCATCGCGCGGTCGCCTTCTCTG
GAAGACGGAATGTCCTGGGTACCTCATCCATCATACTTCCCTGTCCCTCA
GGAGGAAGGGAGGGGTCGGCGGGTGGCGCGAAGGAAGGAGCGGGGACCTC
CTCTAAGGAAGGGGAAGCAGCTCTCGGAGTCAGAAATTGGAGACGGACCG
GAGGAAGATCCGCCTGAGGACGGGAAGGCGGAAGGCGGGGAGAAGGGAGA
GGGCAAGGGAGGGGACAGGGGGGATGTCTTCGTGCCCAGCCGGTCGCAGG
AGTCGACGGAAGCCTCTCCCCTGCTTCGACAAAGTAGAGGGGGTGGTGGG
GATGGGAGGGAGAGGGGGCGGCGGGCGGCAGGAAGGCCGCAGGAGGGAGG
AGGGGCGGTGGAGGCTCGAGAGGAGAGGATTGCTTCTTCTTACCCTCGGA
GTGCGGCGGCCCCCCTCCCTTCGCACGTACCACCTCACATGGTCCCAACC
ATCCCCACGCCTTACTTCCCTCCAGTGACCGAGGGCGCTTTTCCCCCTTC
TCCGCCCGTTCCACCGGGAGCGTATCCGTATGCATATGGAGCGGCGTATC
AGCATCCCTTCCTCCCCCCCTCCCTTCCTTCCCTTCCTCATGCCTCTCCG
TCCGGCGTCCCTTACCCCGCTGCGCCACCCTACGTCATGTGGTACCCCTA
CGTCGCTCCCTCCTACGATTCACACCTGTCCTATCCCACAGCACACCTAC
CGCCCTACCCTGAGAACCCCTCTCGGCCCGGGCAGGGGCCGCGGGAGGGG
GGGGAGGACGGAGGGGGGGGAAGACGGACATTATTGAAGAGACAGGGGAG
GATAATGGAGCTGAAGCTGCGGGGGAAACAGACGAAAAAGGAGTGTCTCG
GTCTTTATGACGCACATGGCCTGTACCGGCGAGGCCTGATCTCCTACACC
TTCGCCTAGTCCCGCCCGTTACGCCGTTTCCGCTTTCTGCCCCCTTTTAT
TGCGTCCCGACAGCTTTCCTTTTGGTTCACATTTTATTTCCCTTGTTCCA
CGTTTTGGCGGTGGAAACTGATAGATGCGGCGAACGAAAAGCAATAACCC
ACCGGCTGAAGCACGATAGAAACAAAGACCGACACCTGTGGGACTCGTGT
GAAGTAGGGCTACACCACTCCAGAACCAAAAGAGGAAAAGACTGCATTCC
ACACTCAGAGAGGAAGGAGTGTGATGCGTGGAATTCACACGTGTGGGTGC
AGATTCTCTCTCTTTTCTTACAGTACATCCCTAACACGCGGGCGGTTTCC
CTCTAGTAGTTGGGGGAAAAGGCATGAAAGGGTGTCAGCATGAAGTTTTA
AACAGTCATTCGATGAGCTTGGTGTGTCGTACCCTTGCACATATGTCCTG
GTTGGTCGAGGGAGAAAGCAAGGACCTCTACAGCATTACGGCGATGAGTG
CGAACGAGCATACTCGTGTCTTCATTTCAAACTTTGCCAACAGAGAAATC
GATCAAATGGCTTTTGGAAGAAAATGAATGGAATGTAAAGCTCGGCGCGA
CAGGGCAGCATTGTGTACCTGTGGTTGTTTTGTAGTCAAGTAACTGATAG
TGCATTTAAACAATAATGTACCTTCAAGTAAAAGCGTCCATCGAGACTTC
AAAAAAGG back to topprotein sequence of rna1719 >rna1719-protein ID=rna1719-protein|Name=rna1719|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMF
TLTLQQVTNWGNATAIYPALILPEEHHHDDDHHDDHDDHDHDADHDHDAD
HDHDTDHDHDADHDHDTDHDHDADHDHDTDHDNDHDHDHVELARNLAGGG
GGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATS
VPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNI
CFGPEHVEIDVYGRIRPERDH back to topmRNA from alignment at CM002457.1:1330283..1332202- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1719 ID=rna1719|Name=rna1719|organism=Nannochloropsis gaditana|type=mRNA|length=1920bp|location=Sequence derived from alignment at CM002457.1:1330283..1332202- (Nannochloropsis gaditana)
ATGGTAATGCCATCCATAGTCATGAAATATTTCACGCTCTTCATTGTATT
TGCCGCATCGGTACGTGTTTCACTTTCTTTTCTTCCGTATCTCAAGTAAT
CCTTCAGCTGTTGGGTGGGCTCCCTTTCGATTAGGTCGATTAGGTCTTGT
TCCTCCTCGTTAGAACAGTAGTTTCGCGTTTGTGGACGTGGGTCATTTAC
ATATCAGGAAATGATACCTTGCGACAAATACGGGCATGATGCCTTACCGC
TTTTTCTTTCTTCCTTCCCAGGCACGTGCCGATTGCCCTCCCGATGGCGC
TCTTCAAGTCGCTGTGTCCACAAGCAAAACGCGGGTCAGGAGGGGAGGAG
TCACCATGTTCACTCTGACGTTACAGCAAGTCACGAATTGGGGAAATGCC
ACTGCCATTTACCCTGCGGTACGTTCAAAGGCGAGAAGAAGGGAAGCGTA
GCTGTGCTAACCGTGCGCTGTCATTTTTTCCTGACGTGGGCAACGCATGA
TCATCATTTGTCTGTGGTCCGCTTACCGTTGCTACTTGCCTCATGATATG
ACACACTTACCTTCTGACAGCTTATTCTTCCCGAGGAGCATCACCATGAC
GACGATCATCACGATGATCACGATGATCACGATCATGATGCCGATCATGA
CCATGATGCCGACCACGATCATGATACCGATCACGATCATGATGCCGACC
ACGATCATGATACCGATCACGATCATGATGCCGACCACGATCATGATACC
GACCACGATAATGATCATGATCACGATCACGTTGAGTTGGCTCGAAATCT
CGCAGGGGGAGGGGGAGGGCATGAGCACGAACATGCGCCTGCCTACTTCC
GAAGCGGCCGAATCAAGCCACGCATCTGGAAAAGGTCGCGTTCGAACAGG
CCGATCTTTGAAGCACACGATAGCCTGGTTTACTTCATGCTCCCCTCTGA
CTATGCCACCAGCGTGCCCAACCCCAGGTAACTCCCACAACCTTCAATAT
TGAGAATTAAATGCTTCATACTCGTTATTAGCAGGACGTGTATCAGGCAG
TGTTGAGTGTGAGGGTGGGTCCGGTTTGTATATTTGTTTGCTTTCTTCAA
CAAGGCTTTTGGTTTTCGTGGACCATCCGTTGTCCGTCCACTTGCTTTCT
CAGCGCGTGCACAGATTCGGAGGGCCATTTTAAGGCCCGCTGCATCACTA
TCTTTCCTTGTCCAGCCCTTTCATCCGCATCTCCTCATACCGCCATCCCC
ACTGTTGCTTTCCTTAAGGAGCATGGGTAAAAAAAGGCCATCGGCTTCAG
CGCCCGAGCACGCGTTCAGGTTTGACGTGGTGGTAGGCAAGACGCTGGAA
GAGGATCATCTCGAATTTGATCTGGTTATTCTCGACGGCTTGGACGGCAA
CATCTGCTTTGGTCCGGAACATGTAGAGGTAAGAGGGGAAAGAGAAGGAA
ACGAGAAGGAAGGCTGATTAGATCCCTATTTGGAACGACCGAGAGTCGGC
CTGCTAGAGTATTTAAGGTACATGTCGTCATTAAAAGCTGAAGGAAAGGG
AGCACCGCATAGTCTATGATCAATGCAAACATAACCCCGTCATATACACA
ATTTCTCTTTGTGTATATAATCTTCACTGAAGAAATTTATGACACTTTCC
GCTGCTTTTACGAACAGATTGACGTCTATGGACGCATTCGACCTGAAAGG
GATCATTAGTTCTAGTCGGTCGACTTGCATGGGACGTAATTTTGTTCAAC
ACTGAGTCTTCGGGAGGGAAATAAGAATGTGAAAAGCCTTAAAGAAATGA
GTTAATGGGGCAAGAAGATAGGTGGAGGGCCACCCAAGCGATATTTTTTG
ATCGGTGTGTAAGGACTTGCCCATGTGTTGACCGAGCAGCGAAGAATTAA
ACAAATTATTCCTTATACGA back to topCoding sequence (CDS) from alignment at CM002457.1:1330283..1332202- >rna1719 ID=rna1719|Name=rna1719|organism=Nannochloropsis gaditana|type=CDS|length=4080bp|location=Sequence derived from alignment at CM002457.1:1330283..1332202- (Nannochloropsis gaditana)
ATTGACGTCTATGGACGCATTCGACCTGAAAGGGATCATTAGGAGCATGG
GTAAAAAAAGGCCATCGGCTTCAGCGCCCGAGCACGCGTTCAGGTTTGAC
GTGGTGGTAGGCAAGACGCTGGAAGAGGATCATCTCGAATTTGATCTGGT
TATTCTCGACGGCTTGGACGGCAACATCTGCTTTGGTCCGGAACATGTAG
AGCTTATTCTTCCCGAGGAGCATCACCATGACGACGATCATCACGATGAT
CACGATGATCACGATCATGATGCCGATCATGACCATGATGCCGACCACGA
TCATGATACCGATCACGATCATGATGCCGACCACGATCATGATACCGATC
ACGATCATGATGCCGACCACGATCATGATACCGACCACGATAATGATCAT
GATCACGATCACGTTGAGTTGGCTCGAAATCTCGCAGGGGGAGGGGGAGG
GCATGAGCACGAACATGCGCCTGCCTACTTCCGAAGCGGCCGAATCAAGC
CACGCATCTGGAAAAGGTCGCGTTCGAACAGGCCGATCTTTGAAGCACAC
GATAGCCTGGTTTACTTCATGCTCCCCTCTGACTATGCCACCAGCGTGCC
CAACCCCAGGCACGTGCCGATTGCCCTCCCGATGGCGCTCTTCAAGTCGC
TGTGTCCACAAGCAAAACGCGGGTCAGGAGGGGAGGAGTCACCATGTTCA
CTCTGACGTTACAGCAAGTCACGAATTGGGGAAATGCCACTGCCATTTAC
CCTGCGATGGTAATGCCATCCATAGTCATGAAATATTTCACGCTCTTCAT
TGTATTTGCCGCATCGATTGACGTCTATGGACGCATTCGACCTGAAAGGG
ATCATTAGGAGCATGGGTAAAAAAAGGCCATCGGCTTCAGCGCCCGAGCA
CGCGTTCAGGTTTGACGTGGTGGTAGGCAAGACGCTGGAAGAGGATCATC
TCGAATTTGATCTGGTTATTCTCGACGGCTTGGACGGCAACATCTGCTTT
GGTCCGGAACATGTAGAGCTTATTCTTCCCGAGGAGCATCACCATGACGA
CGATCATCACGATGATCACGATGATCACGATCATGATGCCGATCATGACC
ATGATGCCGACCACGATCATGATACCGATCACGATCATGATGCCGACCAC
GATCATGATACCGATCACGATCATGATGCCGACCACGATCATGATACCGA
CCACGATAATGATCATGATCACGATCACGTTGAGTTGGCTCGAAATCTCG
CAGGGGGAGGGGGAGGGCATGAGCACGAACATGCGCCTGCCTACTTCCGA
AGCGGCCGAATCAAGCCACGCATCTGGAAAAGGTCGCGTTCGAACAGGCC
GATCTTTGAAGCACACGATAGCCTGGTTTACTTCATGCTCCCCTCTGACT
ATGCCACCAGCGTGCCCAACCCCAGGCACGTGCCGATTGCCCTCCCGATG
GCGCTCTTCAAGTCGCTGTGTCCACAAGCAAAACGCGGGTCAGGAGGGGA
GGAGTCACCATGTTCACTCTGACGTTACAGCAAGTCACGAATTGGGGAAA
TGCCACTGCCATTTACCCTGCGATGGTAATGCCATCCATAGTCATGAAAT
ATTTCACGCTCTTCATTGTATTTGCCGCATCGATTGACGTCTATGGACGC
ATTCGACCTGAAAGGGATCATTAGGAGCATGGGTAAAAAAAGGCCATCGG
CTTCAGCGCCCGAGCACGCGTTCAGGTTTGACGTGGTGGTAGGCAAGACG
CTGGAAGAGGATCATCTCGAATTTGATCTGGTTATTCTCGACGGCTTGGA
CGGCAACATCTGCTTTGGTCCGGAACATGTAGAGCTTATTCTTCCCGAGG
AGCATCACCATGACGACGATCATCACGATGATCACGATGATCACGATCAT
GATGCCGATCATGACCATGATGCCGACCACGATCATGATACCGATCACGA
TCATGATGCCGACCACGATCATGATACCGATCACGATCATGATGCCGACC
ACGATCATGATACCGACCACGATAATGATCATGATCACGATCACGTTGAG
TTGGCTCGAAATCTCGCAGGGGGAGGGGGAGGGCATGAGCACGAACATGC
GCCTGCCTACTTCCGAAGCGGCCGAATCAAGCCACGCATCTGGAAAAGGT
CGCGTTCGAACAGGCCGATCTTTGAAGCACACGATAGCCTGGTTTACTTC
ATGCTCCCCTCTGACTATGCCACCAGCGTGCCCAACCCCAGGCACGTGCC
GATTGCCCTCCCGATGGCGCTCTTCAAGTCGCTGTGTCCACAAGCAAAAC
GCGGGTCAGGAGGGGAGGAGTCACCATGTTCACTCTGACGTTACAGCAAG
TCACGAATTGGGGAAATGCCACTGCCATTTACCCTGCGATGGTAATGCCA
TCCATAGTCATGAAATATTTCACGCTCTTCATTGTATTTGCCGCATCGAT
TGACGTCTATGGACGCATTCGACCTGAAAGGGATCATTAGGAGCATGGGT
AAAAAAAGGCCATCGGCTTCAGCGCCCGAGCACGCGTTCAGGTTTGACGT
GGTGGTAGGCAAGACGCTGGAAGAGGATCATCTCGAATTTGATCTGGTTA
TTCTCGACGGCTTGGACGGCAACATCTGCTTTGGTCCGGAACATGTAGAG
CTTATTCTTCCCGAGGAGCATCACCATGACGACGATCATCACGATGATCA
CGATGATCACGATCATGATGCCGATCATGACCATGATGCCGACCACGATC
ATGATACCGATCACGATCATGATGCCGACCACGATCATGATACCGATCAC
GATCATGATGCCGACCACGATCATGATACCGACCACGATAATGATCATGA
TCACGATCACGTTGAGTTGGCTCGAAATCTCGCAGGGGGAGGGGGAGGGC
ATGAGCACGAACATGCGCCTGCCTACTTCCGAAGCGGCCGAATCAAGCCA
CGCATCTGGAAAAGGTCGCGTTCGAACAGGCCGATCTTTGAAGCACACGA
TAGCCTGGTTTACTTCATGCTCCCCTCTGACTATGCCACCAGCGTGCCCA
ACCCCAGGCACGTGCCGATTGCCCTCCCGATGGCGCTCTTCAAGTCGCTG
TGTCCACAAGCAAAACGCGGGTCAGGAGGGGAGGAGTCACCATGTTCACT
CTGACGTTACAGCAAGTCACGAATTGGGGAAATGCCACTGCCATTTACCC
TGCGATGGTAATGCCATCCATAGTCATGAAATATTTCACGCTCTTCATTG
TATTTGCCGCATCGATTGACGTCTATGGACGCATTCGACCTGAAAGGGAT
CATTAGGAGCATGGGTAAAAAAAGGCCATCGGCTTCAGCGCCCGAGCACG
CGTTCAGGTTTGACGTGGTGGTAGGCAAGACGCTGGAAGAGGATCATCTC
GAATTTGATCTGGTTATTCTCGACGGCTTGGACGGCAACATCTGCTTTGG
TCCGGAACATGTAGAGCTTATTCTTCCCGAGGAGCATCACCATGACGACG
ATCATCACGATGATCACGATGATCACGATCATGATGCCGATCATGACCAT
GATGCCGACCACGATCATGATACCGATCACGATCATGATGCCGACCACGA
TCATGATACCGATCACGATCATGATGCCGACCACGATCATGATACCGACC
ACGATAATGATCATGATCACGATCACGTTGAGTTGGCTCGAAATCTCGCA
GGGGGAGGGGGAGGGCATGAGCACGAACATGCGCCTGCCTACTTCCGAAG
CGGCCGAATCAAGCCACGCATCTGGAAAAGGTCGCGTTCGAACAGGCCGA
TCTTTGAAGCACACGATAGCCTGGTTTACTTCATGCTCCCCTCTGACTAT
GCCACCAGCGTGCCCAACCCCAGGCACGTGCCGATTGCCCTCCCGATGGC
GCTCTTCAAGTCGCTGTGTCCACAAGCAAAACGCGGGTCAGGAGGGGAGG
AGTCACCATGTTCACTCTGACGTTACAGCAAGTCACGAATTGGGGAAATG
CCACTGCCATTTACCCTGCGATGGTAATGCCATCCATAGTCATGAAATAT
TTCACGCTCTTCATTGTATTTGCCGCATCG back to top
|