EWM28959.1, cds1715 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28959.1 vs. NCBI_GenBank
Match: gi|585111438|gb|EWM28959.1| (hypothetical protein Naga_100308g3 [Nannochloropsis gaditana]) HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query: 1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPALILPEEHHHDDDHHDDHDDHDHDADHDHDADHDHDTDHDHDADHDHDTDHDHDADHDHDTDHDNDHDHDHVELARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 271
MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPALILPEEHHHDDDHHDDHDDHDHDADHDHDADHDHDTDHDHDADHDHDTDHDHDADHDHDTDHDNDHDHDHVELARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH
Sbjct: 1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPALILPEEHHHDDDHHDDHDDHDHDADHDHDADHDHDTDHDHDADHDHDTDHDHDADHDHDTDHDNDHDHDHVELARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 271
BLAST of EWM28959.1 vs. NCBI_GenBank
Match: gi|553192442|ref|XP_005855571.1| (hypothetical protein NGA_0607410 [Nannochloropsis gaditana CCMP526] >gi|422293486|gb|EKU20786.1| hypothetical protein NGA_0607410 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 352.443 bits (903), Expect = 1.721e-120 Identity = 215/271 (79.34%), Postives = 216/271 (79.70%), Query Frame = 0
Query: 1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPALILPEEHHHDDDHHDDHDDHDHDADHDHDADHDHDTDHDHDADHDHDTDHDHDADHDHDTDHDNDHDHDHVELARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 271
MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVT+WGNATAIYPALILP D DHD D HD D DHDT DHDHDHVE ARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNP RPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH
Sbjct: 1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTDWGNATAIYPALILPV-----------------------DNHTDHDHDTHHDHDTDHDT----------------DHDHDHVESARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNP------RPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 226
BLAST of EWM28959.1 vs. NCBI_GenBank
Match: gi|553185213|ref|XP_005854219.1| (hypothetical protein NGA_0607420 [Nannochloropsis gaditana CCMP526] >gi|422294844|gb|EKU22144.1| hypothetical protein NGA_0607420 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 144.821 bits (364), Expect = 8.531e-40 Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0
Query: 1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPA 69
MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVT+WGNATAIYPA
Sbjct: 1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTDWGNATAIYPA 69 HSP 2 Score: 143.28 bits (360), Expect = 3.433e-39 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 205 RSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 271
RSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH
Sbjct: 87 RSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 153 The following BLAST results are available for this feature:
BLAST of EWM28959.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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