EWM28959.1, cds1715 (CDS) Nannochloropsis gaditana

Overview
NameEWM28959.1
Unique Namecds1715
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1332143..1332202 -
Alignment locationCM002457.1:1331785..1331931 -
Alignment locationCM002457.1:1331226..1331632 -
Alignment locationCM002457.1:1330775..1330934 -
Alignment locationCM002457.1:1330494..1330535 -

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Properties
Property NameValue
Protein idEWM28959.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100308g3.5019.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1332143..1332202 -
CM002457.1supercontigCM002457.1:1331785..1331931 -
CM002457.1supercontigCM002457.1:1331226..1331632 -
CM002457.1supercontigCM002457.1:1330775..1330934 -
CM002457.1supercontigCM002457.1:1330494..1330535 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28959.1 vs. NCBI_GenBank
Match: gi|585111438|gb|EWM28959.1| (hypothetical protein Naga_100308g3 [Nannochloropsis gaditana])

HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPALILPEEHHHDDDHHDDHDDHDHDADHDHDADHDHDTDHDHDADHDHDTDHDHDADHDHDTDHDNDHDHDHVELARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 271
            MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPALILPEEHHHDDDHHDDHDDHDHDADHDHDADHDHDTDHDHDADHDHDTDHDHDADHDHDTDHDNDHDHDHVELARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH
Sbjct:    1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPALILPEEHHHDDDHHDDHDDHDHDADHDHDADHDHDTDHDHDADHDHDTDHDHDADHDHDTDHDNDHDHDHVELARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 271          
BLAST of EWM28959.1 vs. NCBI_GenBank
Match: gi|553192442|ref|XP_005855571.1| (hypothetical protein NGA_0607410 [Nannochloropsis gaditana CCMP526] >gi|422293486|gb|EKU20786.1| hypothetical protein NGA_0607410 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 352.443 bits (903), Expect = 1.721e-120
Identity = 215/271 (79.34%), Postives = 216/271 (79.70%), Query Frame = 0
Query:    1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPALILPEEHHHDDDHHDDHDDHDHDADHDHDADHDHDTDHDHDADHDHDTDHDHDADHDHDTDHDNDHDHDHVELARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 271
            MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVT+WGNATAIYPALILP                        D   DHD D  HD D DHDT                DHDHDHVE ARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNP      RPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH
Sbjct:    1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTDWGNATAIYPALILPV-----------------------DNHTDHDHDTHHDHDTDHDT----------------DHDHDHVESARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNP------RPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 226          
BLAST of EWM28959.1 vs. NCBI_GenBank
Match: gi|553185213|ref|XP_005854219.1| (hypothetical protein NGA_0607420 [Nannochloropsis gaditana CCMP526] >gi|422294844|gb|EKU22144.1| hypothetical protein NGA_0607420 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.821 bits (364), Expect = 8.531e-40
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0
Query:    1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPA 69
            MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVT+WGNATAIYPA
Sbjct:    1 MVMPSIVMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTDWGNATAIYPA 69          

HSP 2 Score: 143.28 bits (360), Expect = 3.433e-39
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query:  205 RSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 271
            RSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH
Sbjct:   87 RSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGLDGNICFGPEHVEIDVYGRIRPERDH 153          
The following BLAST results are available for this feature:
BLAST of EWM28959.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111438|gb|EWM28959.1|0.000e+0100.00hypothetical protein Naga_100308g3 [Nannochloropsi... [more]
gi|553192442|ref|XP_005855571.1|1.721e-12079.34hypothetical protein NGA_0607410 [Nannochloropsis ... [more]
gi|553185213|ref|XP_005854219.1|8.531e-4098.55hypothetical protein NGA_0607420 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1719rna1719Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications