rna1716, rna1716 (mRNA) Nannochloropsis gaditana

Overview
Namerna1716
Unique Namerna1716
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length339
Alignment locationCM002457.1:1315334..1316802 +

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Properties
Property NameValue
ProductMucin-like glycoprotein
Orig transcript idgnl|cribi|Naga_100694g2.7972.mrna
Orig protein idgnl|cribi|Naga_100694g2.7972
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1315334..1316802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100694g2gene1650Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1716rna1716-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28962.1cds1712Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1716 ID=rna1716|Name=rna1716|organism=Nannochloropsis gaditana|type=mRNA|length=339bp
ATGCCGAGCCTCGCCCATCTCGACCTTTCATGCAACCAAATTACGGCATT
GGACACTACTTTCCCTTACCTCCCCTCTCTCCAAATACTATTGGTTCCTT
TCAACCGTATCGAAGACCTAGAGGGCTGGGGTCAGTACGGATCGTGCCTG
TTGCCCGCCTTGCGCACGCTCGACCTGCGAGACAACCTCCTCTCCCACCA
CCTGCCACCCTTCCTCCCTGCCAACGGCAATCCTGTCTGTGCGAGGCCCG
GCTACGTCTCTGTCACGGCAGCTTTGTTCAGGGAGCTGAAGAGGCTCGAC
GGTCTGGACTTAGGTAAGTGCGAGGGAAGCAGCCGGTAA
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protein sequence of rna1716

>rna1716-protein ID=rna1716-protein|Name=rna1716|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MQNHPQTGNFGIGRMYSGYEQRRGIPSLFTLLTFASCICIAIPVNGQPFQ
PSSLASAEGLREAIAVAGFFQGGKSHNKGNAMEGQKIDVIERAIEPESGV
RTAVKASAISADAQSVSPTIAPTPPPSSNTTATPTTAPTTSPTSKPSNVP
TAPPTLAPSIAPSPSPPPTPAPTASNGDGSLPTGLSGGQKFGVFLSVVII
LSALGYIGRYYYENYHQRRRPTRGEGGRRPLLQEEWL
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mRNA from alignment at CM002457.1:1315334..1316802+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1716 ID=rna1716|Name=rna1716|organism=Nannochloropsis gaditana|type=mRNA|length=1469bp|location=Sequence derived from alignment at CM002457.1:1315334..1316802+ (Nannochloropsis gaditana)
TTTTTCGTGGCACTCTCTGTTGTCTTGGCGATTCGCGTGCGATGACATTG
GTAAGTGACAAAACCAGGTGTCGTACATCCGTCCCATCGGTGGTGCCGTG
AAACATGGCTGCGTGAGCGCACAGAAAGACCTCTTTTGAGCTTTAAGCTT
TTCATGTCCAGCGAAACGAAGGGATATATGAGTTTTTGGCCAGAGCACGC
GCGTCGACATTCCAGGCCCATACAACGTCCACCACTGTCACAAGTATTAC
GTCTGTGCCCGTGTGCTTCGCGTAAAAATCTCGGGCATCACACCGTCTGG
ACACCAGAGGTGTAGAAAAGGGCTTGGATTGTTCTGTGAAAGGTATCATG
GAGCCTTCGACTGTATTTACTCGTCCTTTATTCAAATGCAGAACCACCCC
CAGACAGGAAACTTTGGTATCGGTAGAATGTACTCCGGATACGAACAGCG
CCGCGGTATTCCTTCGCTTTTTACCCTGCTGACATTCGCCTCTTGCATCT
GCATTGCTATACCTGTCAATGGGCAACCTTTtcagccgtcctccctcgca
agTGCCGAGGGCCTGCGTGAGGCTATTGCAGTGGCGGGATTTTTCCAGGG
GGGCAAATCCCACAATAAGGTCCGTCAATCGGTTTTTGAGTAGTGCATTG
ACTAGACTTTCGTGTAAGTGTGCAAACTAAATGCTAGGATATTTCTTTTG
TGCAAGTGCGTTATCTATGGGGTGTGTGTAGACTCCTTTCAAACACTTGT
CCACACATTAGAAGCATCGGTACTCTTCGTACAATTGCTGCACTATCTGA
CGCAAATATATCCCCAGGGCAACGCAATGGAAGGACAGAAAATTGATGTC
ATTGAAAGGGCAATTGAGCCCGAATCAGGAGTAAGGACAGCGGTGAAGGC
GTCTGCAATCTCAGCGGACGCACAGAGCGTATCTCCCACCATAGCAccga
ccccgcctccctcctccaacaccacTGCCACCCCAACCACTGCCCCGACC
ACCTCACCAACTTCAAAACCTTCTAATGTCCCCActgccccgcccaccct
ggCTCCATCCAttgcaccttccccctccccacctccgaCGCCCGCGCCGA
CGGCGAGCAACGGGGACGGCAGCCTACCCACGGGGTTAAGTGGAGGACAG
AAATTTGGAGTTTTCTTGAGTGTTGTCATTATATTGAGCGCGTTGGGGTA
TATTGGGAGGTATTATTACGAGAATTACCATCAAAGGCGTCGTCCCAccc
ggggagagggtggacgACGCCCGTTGCTGCAAGAGGAGTGGTTGTAAATA
CGGGCACAAGGCGAGGTCAGGGTAGAAGGAACAGCACACATGTACAAATT
GTTCTTACTTTGTGAAGTCAGTCGAGTGGCATTAATGTCCTTATAATATA
ATCGAGATAATTTAATTTCTTGTATGAGTAACGCGTACGCTTCTATATTC
AATTAACGGCAAGCAAAAA
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Coding sequence (CDS) from alignment at CM002457.1:1315334..1316802+

>rna1716 ID=rna1716|Name=rna1716|organism=Nannochloropsis gaditana|type=CDS|length=1428bp|location=Sequence derived from alignment at CM002457.1:1315334..1316802+ (Nannochloropsis gaditana)
ATGCAGAACCACCCCCAGACAGGAAACTTTGGTATCGGTAGAATGTACTC
CGGATACGAACAGCGCCGCGGTATTCCTTCGCTTTTTACCCTGCTGACAT
TCGCCTCTTGCATCTGCATTGCTATACCTGTCAATGGGCAACCTTTtcag
ccgtcctccctcgcaagTGCCGAGGGCCTGCGTGAGGCTATTGCAGTGGC
GGGATTTTTCCAGGGGGGCAAATCCCACAATAAGGGCAACGCAATGGAAG
GACAGAAAATTGATGTCATTGAAAGGGCAATTGAGCCCGAATCAGGAGTA
AGGACAGCGGTGAAGGCGTCTGCAATCTCAGCGGACGCACAGAGCGTATC
TCCCACCATAGCAccgaccccgcctccctcctccaacaccacTGCCACCC
CAACCACTGCCCCGACCACCTCACCAACTTCAAAACCTTCTAATGTCCCC
ActgccccgcccaccctggCTCCATCCAttgcaccttccccctccccacc
tccgaCGCCCGCGCCGACGGCGAGCAACGGGGACGGCAGCCTACCCACGG
GGTTAAGTGGAGGACAGAAATTTGGAGTTTTCTTGAGTGTTGTCATTATA
TTGAGCGCGTTGGGGTATATTGGGAGGTATTATTACGAGAATTACCATCA
AAGGCGTCGTCCCAcccggggagagggtggacgACGCCCGTTGCTGCAAG
AGGAGTGGTTGTAAATGCAGAACCACCCCCAGACAGGAAACTTTGGTATC
GGTAGAATGTACTCCGGATACGAACAGCGCCGCGGTATTCCTTCGCTTTT
TACCCTGCTGACATTCGCCTCTTGCATCTGCATTGCTATACCTGTCAATG
GGCAACCTTTtcagccgtcctccctcgcaagTGCCGAGGGCCTGCGTGAG
GCTATTGCAGTGGCGGGATTTTTCCAGGGGGGCAAATCCCACAATAAGGG
CAACGCAATGGAAGGACAGAAAATTGATGTCATTGAAAGGGCAATTGAGC
CCGAATCAGGAGTAAGGACAGCGGTGAAGGCGTCTGCAATCTCAGCGGAC
GCACAGAGCGTATCTCCCACCATAGCAccgaccccgcctccctcctccaa
caccacTGCCACCCCAACCACTGCCCCGACCACCTCACCAACTTCAAAAC
CTTCTAATGTCCCCActgccccgcccaccctggCTCCATCCAttgcacct
tccccctccccacctccgaCGCCCGCGCCGACGGCGAGCAACGGGGACGG
CAGCCTACCCACGGGGTTAAGTGGAGGACAGAAATTTGGAGTTTTCTTGA
GTGTTGTCATTATATTGAGCGCGTTGGGGTATATTGGGAGGTATTATTAC
GAGAATTACCATCAAAGGCGTCGTCCCAcccggggagagggtggacgACG
CCCGTTGCTGCAAGAGGAGTGGTTGTAA
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Synonyms
Publications