EWM28962.1, cds1712 (CDS) Nannochloropsis gaditana

Overview
NameEWM28962.1
Unique Namecds1712
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1315719..1315952 +
Alignment locationCM002457.1:1316151..1316630 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28962.1
ProductMucin-like glycoprotein
Orig transcript idgnl|cribi|Naga_100694g2.7972.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1315719..1315952 +
CM002457.1supercontigCM002457.1:1316151..1316630 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000458Tryp_mucin
Homology
[Close]
BLAST of EWM28962.1 vs. NCBI_GenBank
Match: gi|585111442|gb|EWM28962.1| (Mucin-like glycoprotein [Nannochloropsis gaditana])

HSP 1 Score: 475.707 bits (1223), Expect = 1.250e-169
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0 
Query:    1 MQNHPQTGNFGIGRMYSGYEQRRGIPSLFTLLTFASCICIAIPVNGQPFQPSSLASAEGLREAIAVAGFFQGGKSHNKGNAMEGQKIDVIERAIEPESGVRTAVKASAISADAQSVSPTIAPTPPPSSNTTATPTTAPTTSPTSKPSNVPTAPPTLAPSIAPSPSPPPTPAPTASNGDGSLPTGLSGGQKFGVFLSVVIILSALGYIGRYYYENYHQRRRPTRGEGGRRPLLQEEWL 237
            MQNHPQTGNFGIGRMYSGYEQRRGIPSLFTLLTFASCICIAIPVNGQPFQPSSLASAEGLREAIAVAGFFQGGKSHNKGNAMEGQKIDVIERAIEPESGVRTAVKASAISADAQSVSPTIAPTPPPSSNTTATPTTAPTTSPTSKPSNVPTAPPTLAPSIAPSPSPPPTPAPTASNGDGSLPTGLSGGQKFGVFLSVVIILSALGYIGRYYYENYHQRRRPTRGEGGRRPLLQEEWL
Sbjct:    1 MQNHPQTGNFGIGRMYSGYEQRRGIPSLFTLLTFASCICIAIPVNGQPFQPSSLASAEGLREAIAVAGFFQGGKSHNKGNAMEGQKIDVIERAIEPESGVRTAVKASAISADAQSVSPTIAPTPPPSSNTTATPTTAPTTSPTSKPSNVPTAPPTLAPSIAPSPSPPPTPAPTASNGDGSLPTGLSGGQKFGVFLSVVIILSALGYIGRYYYENYHQRRRPTRGEGGRRPLLQEEWL 237
[Close]
BLAST of EWM28962.1 vs. NCBI_GenBank
Match: gi|553194480|ref|XP_005855965.1| (hypothetical protein NGA_0547800 [Nannochloropsis gaditana CCMP526] >gi|422293108|gb|EKU20408.1| hypothetical protein NGA_0547800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.346 bits (342), Expect = 2.252e-37
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:   15 MYSGYEQRRGIPSLFTLLTFASCICIAIPVNGQPFQPSSLASAEGLREAIAVAGFFQGGKSHNK 78
            MYSGYEQRRGIPSLFTLLTFASCICIAIPVNGQPFQPSSLASAEGLREAIAVAGFFQGGKSHNK
Sbjct:    1 MYSGYEQRRGIPSLFTLLTFASCICIAIPVNGQPFQPSSLASAEGLREAIAVAGFFQGGKSHNK 64
The following BLAST results are available for this feature:
BLAST of EWM28962.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111442|gb|EWM28962.1|1.250e-169100.00Mucin-like glycoprotein [Nannochloropsis gaditana][more]
gi|553194480|ref|XP_005855965.1|2.252e-37100.00hypothetical protein NGA_0547800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1716rna1716Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications