rna1714, rna1714 (mRNA) Nannochloropsis gaditana

Overview
Namerna1714
Unique Namerna1714
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length773
Alignment locationCM002457.1:1309505..1311376 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100885g1.2070.mrna
Orig protein idgnl|cribi|Naga_100885g1.2070
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1309505..1311376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100885g1gene1648Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1714rna1714-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28963.1cds1710Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1714 ID=rna1714|Name=rna1714|organism=Nannochloropsis gaditana|type=mRNA|length=773bp
TTCCTTCTTTCCTGTCCGCACTTGTTGCCAAGCGAAGAGGTCGCGTCCGA
GGACTCACGCTCTAGTTGCCCTCTTTCCCTCCCTCCCTTCCGCCCTCCCT
ACCTCCCTCGGTGAGCGCAGGTGGTGGAAGACGGTTATGAATTTCAAGCC
TCAAGACAGCTGGTCACACTTTTCTCAGCGCCGAATTACTGCGGGGAGTT
CGACAACGCGGGGGCCATGATGTGTGTAAATGAGGACTTGGTGTGCTCTT
TCAGGGTCCTGCGCCCGGCCCGACACCTAGTGGGGCGGGGAGGGAAGGGG
GGAGGGGGGGTTGGGGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAGGAGG
ACGAGATCGGAGGGTCCTTGTTTCGGGTGCCGGACGCGGCGGAGGACGGA
GAGAAGGAAGTCACCGGCACGTCATCTTTCTAAAGGAAGGTGGGAGGAAG
GGAAGGAGGGAGGGAAGGAGGCGTTCCGGGGGCGGATCGGGGTCACGTGC
AAAGCTTTTGTGCGGTGTTGATTTAGAAAGAGAAGGAAGATGAAGGATCC
TCGGATAGGCTGGCACGGGCAGGGAGGGGAAATGTGGAAGGGGAAGGGGA
GAGAGGGGGGGAGGTCGTGAGGGAGGCAGGGCGAGAATTCTGAAGGGAAG
GAGAGGGGGGGTCCAGTCTCTGGGAGAGAATTGTAAGAAAAGCGTGAGTG
TCCCTGTTGTGAAACTGCCATTGTCCTATCTTGATCATACATCACAAAAT
GTGGCTTTGACGATCTAGGTTCC
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protein sequence of rna1714

>rna1714-protein ID=rna1714-protein|Name=rna1714|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MKRDEAIFSALSEKKACLETNLAQAKSELEAKQAMLDDQKKAIAALEQAE
KQKRDASEKEQQFIQEAVDRALEQAEMEHTRQLEAKEKSLRFLQDELTAQ
AAVFERRRAESEMKAREEKDG
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mRNA from alignment at CM002457.1:1309505..1311376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1714 ID=rna1714|Name=rna1714|organism=Nannochloropsis gaditana|type=mRNA|length=1872bp|location=Sequence derived from alignment at CM002457.1:1309505..1311376- (Nannochloropsis gaditana)
ATGAAAAGGTACAGCGACTACAGGGGCTTGGAAATGGGGCAGGTATTGAA
GTCACGGGAAAAGAGAAGGGGGACCACCACCATCTGATTCCCGTCGGTGT
GACAGGCGCTGCTGCTGGCGCAGGAGGCTAGGGAGCGGGAGGGGAAGGAG
AGGGAGAGAGAAACAGCCACACGTACGTCAAGGAGGAATTTTTGTGAGGA
AGGGAGGGCGTTTACCTACGATGCACGTACTTTGTCTCCCCTTCAAGCTT
CCATTCCATGTCCCTTCTTGTTCTCCCTCCATTTCCCCTCTGATTCCAGC
CCGCATTCATCTTGGGAAAGTGCTTGCTTTTTCGAATATTTCATGTCATA
AAGATATTGTCACGCACTCTCTGCTCTTTTTCTCTTTCCCTATCTTGCTT
CCTCCGGTAAGTACGGGAGACGCTCTCTGCCACGTCGCGCCTGCTAGCTT
CATACAAAACGCACGCCAAAAGGGACGAAGCGATCTTCTCTGCCCTTTCC
GAGAAGAAAGCGGTAGGTTGCACGCTACAGGACCCCGAAAGCCCTTGCTC
TCCGTCCCGACCTCCCTCTTGCGGACCCGTCTTTGCTCTCCTTCCCTCTC
ATTCCCCCCCAACATTCGTCTACGTGCCAGTTTTCCCTTCAAGCTCTGAT
TGCTCGTCTTACTCCCCCCCCCCCCTTCTACCCTTCCCTCTCTCTCTCAC
CTCTCCCGCGAGAAGTGCTTAGAAACTAATCTAGCACAGGCAAAGTCAGA
ATTAGAGGCGAAACAGGCGATGTTGGACGATCAGAAAAAGGCAATTGCAG
GTGAGAAGAAGGAAAGTGAGTGATGGAACACAAATGAGAAGATCTAAAGA
GAAATAGCGTATCTGCATGTACTAATAGCGACGTAATAGCGAACCAGGGT
CATCTCATATTTTCCTCTGTCGACTTCTGCTTCCCCTCCTTTCATTCTCC
ATCCTTTCCATCTCTCCCGCCCTCTTCCCAGCCCTCGAGCAGGCAGAAAA
ACAAAAAAGGGACGCTTCTGAGAAGGAACAGCAGTGTCACAAGAAAGAAA
AAGCCGGGATGACACGCGACATCGAAACACTACGAGAAGATGTAAACATG
AGGGGCAGACGGGAGGACGGATTGAGCGAGAGTAGGAAGGGCAAGCACGA
TTTACCAATCTCCTTGAGACCACAGGGAAACGCAAAACCCCATGGAAATG
TCGAGGAATGCATTGAGGAAAAAGCGAGAGAAGGCAAAATAGCGATGAAG
TGAGGAAATTAGGGATATCTTACACTTGACTTCCCTATTCCTGTCCCGTT
TCCCGCCGATTCCTTCCTCACAGCTCTCGCGAGCCCATTCCCTGACCGAC
TCCCTCAAAAACTCGCTGTCGGCCTGTGGAAAGGACCGCGACCGGGCTCA
AGCAGCCCTTCTCGCCGCCTCAAAGTCCGATCCAGCCCCCTCCCCTCCTC
CGGCCCCGCCCCTTTGTCTCCCACCATCGGCCCCAGTCATCCAGGAGGCG
GTGGATCGGGCCCTGGAGCAGGCCGAGATGGAGCACACGAGGCAGTTGGA
GGCGAAAGAAAAGTCCCTACGGTCAGACAAGTGATGGGGCGAGGGAGGGA
AGAGGAAAGGGAGAAGGGAAAGACGGCGCTTGCTGGGACATGGGCAGTAA
AAGACGTCTGCATTCCTGGTCAATATCTAGCCGGGTCCTTTCCCGCGGGG
CATCTCGTTTAGATCATACTTCTCTGACATTTCTCCCTTCGCCCCACCCT
TCTTTTCCTTGACATGCTTACAACCCAGCTTCCTGCAAGACGAGTTGACC
GCACAGGCCGCTGTGTTTGAGCGACGGCGAGCCGAGTCCGAGATGAAGGC
ACGAGAGGAGAAGGACGGGTAA
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Coding sequence (CDS) from alignment at CM002457.1:1309505..1311376-

>rna1714 ID=rna1714|Name=rna1714|organism=Nannochloropsis gaditana|type=CDS|length=2196bp|location=Sequence derived from alignment at CM002457.1:1309505..1311376- (Nannochloropsis gaditana)
CTTCCTGCAAGACGAGTTGACCGCACAGGCCGCTGTGTTTGAGCGACGGC
GAGCCGAGTCCGAGATGAAGGCACGAGAGGAGAAGGACGGGTAATCATCC
AGGAGGCGGTGGATCGGGCCCTGGAGCAGGCCGAGATGGAGCACACGAGG
CAGTTGGAGGCGAAAGAAAAGTCCCTACGCCCTCGAGCAGGCAGAAAAAC
AAAAAAGGGACGCTTCTGAGAAGGAACAGCAGTTGCTTAGAAACTAATCT
AGCACAGGCAAAGTCAGAATTAGAGGCGAAACAGGCGATGTTGGACGATC
AGAAAAAGGCAATTGCAGGGACGAAGCGATCTTCTCTGCCCTTTCCGAGA
AGAAAGCGATGAAAAGCTTCCTGCAAGACGAGTTGACCGCACAGGCCGCT
GTGTTTGAGCGACGGCGAGCCGAGTCCGAGATGAAGGCACGAGAGGAGAA
GGACGGGTAATCATCCAGGAGGCGGTGGATCGGGCCCTGGAGCAGGCCGA
GATGGAGCACACGAGGCAGTTGGAGGCGAAAGAAAAGTCCCTACGCCCTC
GAGCAGGCAGAAAAACAAAAAAGGGACGCTTCTGAGAAGGAACAGCAGTT
GCTTAGAAACTAATCTAGCACAGGCAAAGTCAGAATTAGAGGCGAAACAG
GCGATGTTGGACGATCAGAAAAAGGCAATTGCAGGGACGAAGCGATCTTC
TCTGCCCTTTCCGAGAAGAAAGCGATGAAAAGCTTCCTGCAAGACGAGTT
GACCGCACAGGCCGCTGTGTTTGAGCGACGGCGAGCCGAGTCCGAGATGA
AGGCACGAGAGGAGAAGGACGGGTAATCATCCAGGAGGCGGTGGATCGGG
CCCTGGAGCAGGCCGAGATGGAGCACACGAGGCAGTTGGAGGCGAAAGAA
AAGTCCCTACGCCCTCGAGCAGGCAGAAAAACAAAAAAGGGACGCTTCTG
AGAAGGAACAGCAGTTGCTTAGAAACTAATCTAGCACAGGCAAAGTCAGA
ATTAGAGGCGAAACAGGCGATGTTGGACGATCAGAAAAAGGCAATTGCAG
GGACGAAGCGATCTTCTCTGCCCTTTCCGAGAAGAAAGCGATGAAAAGCT
TCCTGCAAGACGAGTTGACCGCACAGGCCGCTGTGTTTGAGCGACGGCGA
GCCGAGTCCGAGATGAAGGCACGAGAGGAGAAGGACGGGTAATCATCCAG
GAGGCGGTGGATCGGGCCCTGGAGCAGGCCGAGATGGAGCACACGAGGCA
GTTGGAGGCGAAAGAAAAGTCCCTACGCCCTCGAGCAGGCAGAAAAACAA
AAAAGGGACGCTTCTGAGAAGGAACAGCAGTTGCTTAGAAACTAATCTAG
CACAGGCAAAGTCAGAATTAGAGGCGAAACAGGCGATGTTGGACGATCAG
AAAAAGGCAATTGCAGGGACGAAGCGATCTTCTCTGCCCTTTCCGAGAAG
AAAGCGATGAAAAGCTTCCTGCAAGACGAGTTGACCGCACAGGCCGCTGT
GTTTGAGCGACGGCGAGCCGAGTCCGAGATGAAGGCACGAGAGGAGAAGG
ACGGGTAATCATCCAGGAGGCGGTGGATCGGGCCCTGGAGCAGGCCGAGA
TGGAGCACACGAGGCAGTTGGAGGCGAAAGAAAAGTCCCTACGCCCTCGA
GCAGGCAGAAAAACAAAAAAGGGACGCTTCTGAGAAGGAACAGCAGTTGC
TTAGAAACTAATCTAGCACAGGCAAAGTCAGAATTAGAGGCGAAACAGGC
GATGTTGGACGATCAGAAAAAGGCAATTGCAGGGACGAAGCGATCTTCTC
TGCCCTTTCCGAGAAGAAAGCGATGAAAAGCTTCCTGCAAGACGAGTTGA
CCGCACAGGCCGCTGTGTTTGAGCGACGGCGAGCCGAGTCCGAGATGAAG
GCACGAGAGGAGAAGGACGGGTAATCATCCAGGAGGCGGTGGATCGGGCC
CTGGAGCAGGCCGAGATGGAGCACACGAGGCAGTTGGAGGCGAAAGAAAA
GTCCCTACGCCCTCGAGCAGGCAGAAAAACAAAAAAGGGACGCTTCTGAG
AAGGAACAGCAGTTGCTTAGAAACTAATCTAGCACAGGCAAAGTCAGAAT
TAGAGGCGAAACAGGCGATGTTGGACGATCAGAAAAAGGCAATTGCAGGG
ACGAAGCGATCTTCTCTGCCCTTTCCGAGAAGAAAGCGATGAAAAG
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Synonyms
Publications