rna1710, rna1710 (mRNA) Nannochloropsis gaditana

Overview
Namerna1710
Unique Namerna1710
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1460
Alignment locationCM002457.1:1302003..1303410 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100918g1.887.mrna
Orig protein idgnl|cribi|Naga_100918g1.887
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1302003..1303410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100918g1gene1644Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1710rna1710-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28967.1cds1706Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1710 ID=rna1710|Name=rna1710|organism=Nannochloropsis gaditana|type=mRNA|length=1460bp
ATGTTTTCCACTGTTTCCTCATGCAGGATGTCAGGATGGGCTGTAGCAAT
TATTTTGCTTCCAACTTACGGCTTTGCCTTTTTTCGAAACGGCCCCTTCG
TGCCGTCCACTCCACGCTCCTTCTCCCTCGCCACGAGACTCAGCACTGCC
AAGGCCACTCCCGGAGATGTCGCGACAATCGACCTTTCTATAATGCTTGA
GGACGGCACTGCCATGCCGGCTGATTTTGATACAGGGTCACAGGTACGCT
TTCGCCTCGGTCGTGGAGGACTGCCTCCTTACGTGCATGCCGCCGTGGAA
GGAATGCACGTCCAAGAAAGAAGAACACGGTTAGTGCCACCGGACGAGGC
CTACGGGCCTTACTATCCGGAGCTGGCCGCTGATATCCCTGCGGAGAACA
CCCCTCCAGGGATGAAAGTGGGCGATAAGGTCAAACTCACCAACGGCTTG
ACAGCCCGGGTCACCCGGCACGACCCCGCCCAAGGACTTTTCAGCCTCGA
CGGCAACCATCCTTTCGCCGGGCGCACCCTCTCGCTCTCCCTGCTCCTCC
ACGACCTGATGCCCGCGGACAGCCCCTGCTTTGCGACGGTGCATCTGGCA
GCCGGGTGCTTCTGGGGTCTGGAATTAGCCTTCCAGCGGCTCCCAGGGGT
GGTCGCCACGGCGGCAGGGTACACGCAAGGAGGCAATGAAGGGGAGGGGG
AGGAACGGCGGGCGCCGACGTACAGCGAGGTGTGCAGCGGGCGCACGGGT
TATGTGGAGGCGGTGGAGGTGCTATTCGATGAGGGAGTGGTCTCTTTCGA
GAAGATCTTGGAGGTCTTTTGGAACCGTCATGACCCCACCCAGCTCAACG
GCCAAGGCAACGATCTCGGCACACAATACCGGGGAGGCATCTATTACACT
TCCGACGCGCAGAAACGGGCGGCTGAGGAGAGTAAGGCTCGGTTGGAAGC
ATCGGGACTTTACGACAAACCTATTGTGACGGAAATTTTGCCAGCCGACA
TTTTCTATACGGCCGAGGTACATGGAGGGGAAGGACCCCAAGGGTTTCGG
AGGGTAGACTCGAAAGGGGAGGAGAAGGGGACGCGAAGGATGGGATTTGC
GTGCGGGATGGGCGAGCAGCGGGTGGGAGGGAAGGGCGTGGAGACGAGGA
GGAGGGATAGGAGGAAGAGGCAAGAGAGCTCGAGGGAGGTGGGGATAAGC
GGCGTACCCTCCTTTCTTATTTTTACATTGGGAGAGGGAGGTTGTAGCTG
ATCAGTTTCTCTGCTCTTTTCCTCCCTTCTCCTTCCCTTTCCATCCTCTC
ACTATGATCTTATACCATGGCCCCCTCCTCGCCGCCATATCATTTATTTT
CCTTAGGAATATCACCTTCAATACCTCATGAAAAACGGGCAAAGCGCCAA
GAAGAACGATCCTGCCCCCATCCGGTGCTACGGATAGGGGAAATCGGCGT
AGGGAGTGCG
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protein sequence of rna1710

>rna1710-protein ID=rna1710-protein|Name=rna1710|organism=Nannochloropsis gaditana|type=polypeptide|length=423bp
MRTRVFFDISPPSARFYYRTYALIVKVRVAKVMNDPSLSAVDAGFELKQR
VERAGTSEEGRGWSGLVESHRGRSREEVQTQGMAGGMEGMEGREEGEEDT
VVIDDDQRPLSIQRSSLLPGEPSSLTQNPLWPGPDEGTTDHEGVPWGGEE
EIKTEGEEEATWDMLDDLPEIPHLCSIHASQSHALPATAPTEPLSPPHQA
PSTHSSSSGGWYDVVKEVQDLPPPPSGPITTMFCWMYLDEWGNEFEYGPQ
AQLLLEREWRCGKAHALLLVPPPAPPCPSPPGESPLHRHTHRPHGAPPTD
EGPPRSYVVHFASPQANGVEEHVQSNRFTGTQRRVRRMTRGPKPSHGLGA
VVRRWKGRWRRGQETLATLGEAKRGKRAREGGEAEMGERAREGRGEEGGL
EGDRGPWYSLLASQLCPSLPSSL
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mRNA from alignment at CM002457.1:1302003..1303410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1710 ID=rna1710|Name=rna1710|organism=Nannochloropsis gaditana|type=mRNA|length=1408bp|location=Sequence derived from alignment at CM002457.1:1302003..1303410+ (Nannochloropsis gaditana)
GCCAATAATATGTAGATGTGCGGGGGGGAAAACCATGCACAATCCAGACT
TTCAAGACATCATTGAATGAGATTTATTCTTTTTGGACGGAAGGCTTGTA
ACAATTGCTCAAGAGGCTCAAGCAGTGGATATCACAAGCCATGAGGACCA
GAGTGTTCTTTgacatttcccctccttccgcacGATTTTACTACAGAACT
TATGCGCTCATTGTCAAGGTAAGGGTCGCTAAGGTAATGAATGATCCTTC
TCTGTCTGCAGTGGACGCAGGCTTCGAGTTAAAGCAGCGAGTCGAGAGGG
CTGGCacaagcgaggagggaaggggatggtCGGGCCTTGTGGAAAGCCAc
cgggggagaagcagggaagAGGTTCAGACGCAAGGAATGGccggagggat
ggagggaatggaggggagggaggagggagaggaggatacgGTGGTCATTG
ACGACGACCAgcgtcctctttccatccAGCGCTCGTCCTTGCTGCCAGGC
GAACCATCCTCATTAACGCAGAATCCCCTCTGGCCTGGGCCGGATGAAGG
CACCACGGACCATGAAGGGGTCCCATggggtggagaagaggaaatcaaga
cagaaggggaggaggaagcgacgtgGGATATGCTGGATGACCTCCCTGAA
ATTCCTCATTTATGCTCCATCCATGCGTCCCAAAGCCATGCATTACCTGC
CACGGCACCGACCGAGCCCTTGTCTCCGCCCCACCAAGCCCCCTCTACtc
actcctcttcctccggtgGATGGTACGATGTGGTCAAGGAGGTTCAGGac
cttccgccccctccttccggccccATCACCACCATGTTCTGCTGGATGTA
CCTGGACGAATGGGGCAACGAATTTGAATATGGGCCACAAGCCCAGCTTC
TTTTGGAACGGGAATGGCGGTGCGGGAAAGCCCATgcgcttctcctcgtt
cctccgcctgctcctccttgtccttctcctcccggagagtctcccctcca
ccgtcatacccaccgcccgcacggcgccccccccaccgaTGAAGGCCCTC
CGCGCTCCTACGTGGTGCATTTTGCCAGCCCGCAAGCCAACGGAGTGGAA
GAGCATGTGCAAAGCAACCGGTTCACAGGCACCCAACGAAGGGTCCGTCG
GATGACGCGGGGTCCTAAACCATCACATGGACTAGGGGCGGTGGTGCGTC
GATGGAAAGGCCGGTGGCGGCGAGGGCAGGAGACGCTGGCGACATTGGGT
gaggcaaagaggggaaagcgcgcaagggagggtggtgaggCAGAGATGGG
agagcgagcgagggagggcagaggggaagagggagggttggagggagaca
gaggaccCTGGTACAGCCTGCTTGCCTCCCAACtatgtccctccctccct
tcctccct
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Coding sequence (CDS) from alignment at CM002457.1:1302003..1303410+

>rna1710 ID=rna1710|Name=rna1710|organism=Nannochloropsis gaditana|type=CDS|length=1268bp|location=Sequence derived from alignment at CM002457.1:1302003..1303410+ (Nannochloropsis gaditana)
ATGAGGACCAGAGTGTTCTTTgacatttcccctccttccgcacGATTTTA
CTACAGAACTTATGCGCTCATTGTCAAGGTAAGGGTCGCTAAGGTAATGA
ATGATCCTTCTCTGTCTGCAGTGGACGCAGGCTTCGAGTTAAAGCAGCGA
GTCGAGAGGGCTGGCacaagcgaggagggaaggggatggtCGGGCCTTGT
GGAAAGCCAccgggggagaagcagggaagAGGTTCAGACGCAAGGAATGG
ccggagggatggagggaatggaggggagggaggagggagaggaggatacg
GTGGTCATTGACGACGACCAgcgtcctctttccatccAGCGCTCGTCCTT
GCTGCCAGGCGAACCATCCTCATTAACGCAGAATCCCCTCTGGCCTGGGC
CGGATGAAGGCACCACGGACCATGAAGGGGTCCCATggggtggagaagag
gaaatcaagacagaaggggaggaggaagcgacgtgGGATATGCTGGATGA
CCTCCCTGAAATTCCTCATTTATGCTCCATCCATGCGTCCCAAAGCCATG
CATTACCTGCCACGGCACCGACCGAGCCCTTGTCTCCGCCCCACCAAGCC
CCCTCTACtcactcctcttcctccggtgGATGGTACGATGTGGTCAAGGA
GGTTCAGGaccttccgccccctccttccggccccATCACCACCATGTTCT
GCTGGATGTACCTGGACGAATGGGGCAACGAATTTGAATATGGGCCACAA
GCCCAGCTTCTTTTGGAACGGGAATGGCGGTGCGGGAAAGCCCATgcgct
tctcctcgttcctccgcctgctcctccttgtccttctcctcccggagagt
ctcccctccaccgtcatacccaccgcccgcacggcgccccccccaccgaT
GAAGGCCCTCCGCGCTCCTACGTGGTGCATTTTGCCAGCCCGCAAGCCAA
CGGAGTGGAAGAGCATGTGCAAAGCAACCGGTTCACAGGCACCCAACGAA
GGGTCCGTCGGATGACGCGGGGTCCTAAACCATCACATGGACTAGGGGCG
GTGGTGCGTCGATGGAAAGGCCGGTGGCGGCGAGGGCAGGAGACGCTGGC
GACATTGGGTgaggcaaagaggggaaagcgcgcaagggagggtggtgagg
CAGAGATGGGagagcgagcgagggagggcagaggggaagagggagggttg
gagggagacagaggaccCTGGTACAGCCTGCTTGCCTCCCAACtatgtcc
ctccctcccttcctccct
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Synonyms
Publications