rna171, rna171 (mRNA) Nannochloropsis gaditana

Overview
Namerna171
Unique Namerna171
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1524
Alignment locationCM002455.1:451699..452837 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g48.9833.mrna
Orig protein idgnl|cribi|Naga_100013g48.9833
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:451699..452837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g48gene163Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna171rna171-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30545.1cds171Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna171 ID=rna171|Name=rna171|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
TCCTGTCCGTTTTCCAGATTGAAATTATCATGTGCGTACATCACAGATCA
GGACTAAATTGCGAAGATCTTACAAAGCCGAAAAATGCTTAAAAGTAAGA
TAGCGGGGCCCGGAAGCTGGCAAGCTTTGGGAGCTGGTTTACTTGCCATA
TCGCTGGTCGCCGGGCCGTCACGTCAAATTCAGCTTTACGTGCCTCCAGT
GACAGCGTTGCTTTGCGGGTACGCCGCCTTACCTCACGGGGGGTTGGGAC
AACGGATAGTCTTAGGGACTATGGGGGCTTTGAGTGCCGGGGCCTTTGGC
TTCCACCATCTACGACGACGTCATCCGATATGTCCTGCACTGTCTCAGGG
GGAAGAAGAGCTGGCACTGATTACTGGCGCCAGCAGCGGGATAGGGCGGG
AGATAAGCTTGGAGCTAGCGAGAAGAGGCTTCGGTGTCATTCTTGTCGCC
CGTCGGGCAGATAAACTGCAGGAGTTGGCGTCAGATATTCGAGCACTGCT
GGCTGACCGGAAAAGAATGGTCCCCATTCACATCGTGCCGGCGGATCTAA
GTTGTCCCGAGGCAGCCCGGCGTGTGTACGAGAGCGTAGTGCGCGAAAAG
GGCTTGCAGGTGAGCGCCTTGGTCAACAACGCCGGGGTGGGGTACACCGA
CTCCTTTCTAAAGATGCCTACGGCGAAGATCGAGGAAATCGTCCATTTGA
ATGCATTATCTCTGACCCAGCTTTGTTGGTTGTTCGGTCAAGAGATGGCC
TCCCGAGGCCGTGGGCGCATCATGTGCGTCTCCTCCATTGCCGGCGCCGC
GCCCGGGCCCCTGGTGGCCGTCTATAGCGCCAGCAAAGCCTTCGTGTCCT
CCTTCACCCTGGCCATTCAACACGAACTCGAGCCTGGAGGCGTCTCGGTG
ACGAACCTGCTGCCCGGTGCGACCTTCACCGAGTTCCAGGCGCGCGCCCA
CGCCCAGGCCGCGGCCGCTTTCTCCGTCCCGGGGCTGGCTATGCCTGCCG
ATCGGGTGGCGCGTGAGGGCGTGACGGGGATGCTGCGAGGGGACAGCGTC
GTAGTCCCGGGCCTGGTGAACCAGGCCTTCGTGTTGGCCACGGCTGTTTT
GCCGCCGAAGCTCCTGCGTTTGGTGACGTCGCTGGCTTGGAGTGAGGTCC
CTATATGACTGGGCACGACTGGCGATATTGCGAGGTGTGCAGTGAGACGA
AGCATTGGTACCTGCTCTCAAGCCTGCGAAACGTCTGGTGGACTCTCCCA
TTGCATAGGACGGGTCAAGTCCTGATGTGGTCAATAGAAATCAGCGTTCT
GGATGGATCGCCTTCATGTTTGTCTCTTGTCGTACTTCCGGAAACTGCAC
CGTTGCTTTCAGTCGGTGAAATGTTGTAATACAATCTCATATGCAGGTTC
CATCAGGCAAATTTGAAAAGAGTTTTGCGAATCGTAGGCGACCTATATTT
GGGTCGCTGCATCGCCTGAGCGTTTGTATTGACGAAAGCCTTAACCAGTG
CAATTTAAGATATCGGCATCGCTA
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protein sequence of rna171

>rna171-protein ID=rna171-protein|Name=rna171|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MRKMSHYSLVSRAIPVSISSRICASPLSYTSSPGFSLQHQRTQRPQYLPM
LHSTTTSLFLVLGAMLCAVTKSFIPVPARASRSVTYFPAKPTAISLVGST
MRLTPYMFMSTSNFDEPLILTEENAALVLEAARQELGTMFGYTKENQAVG
ITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAMVEIE
DVEQLKGDDAKSVSDFYAH
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mRNA from alignment at CM002455.1:451699..452837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna171 ID=rna171|Name=rna171|organism=Nannochloropsis gaditana|type=mRNA|length=1139bp|location=Sequence derived from alignment at CM002455.1:451699..452837+ (Nannochloropsis gaditana)
ATCAATTCTTCACGCCCAACAAACCTCCGCGACCGAATGAGGACGAGTCT
ATAAATGAGAAAAATGTCACATTATTCGCTTGTGTCTCGTGCGATACCCG
TTTCGATCAGCTCACGTATTTGCGCATCACCCCTCTCCTACACCTCAAGC
CCAGGCTTCTCGTTGCAGCATCAAAGGACGCAGCGGCCTCAATATCTTCC
AATGCTTCATTCAACGACGACATCGCTCTTTCTCGTACTAGGGGCAATGT
TGTGTGCAGTTACCAAAAGTTTCATCCCTGTGCCGGCACGCGCGTCCCGC
TCTGTAACTTACTTCCCTGCAAAGCCCaccgccatctccctcgTGGGCTC
TACAATGAGACTGACGCCCTACATGTTCATGAGCACGAGCAATTTCGACG
AGCCTCTCATTCTTACTGAGGAGAATGCAGCTTTGGTTCTGGAGGCCGCT
CGGCAAGAGCTTGGTACCATGTTTGGGTACACCAAGGAGAACCAAGCTGT
GGGCATTACTGGGGAGGTTGACCTGGTGGCCGTTGAGGGCATCAGCATCA
TCGTCCGTCTCAAGAACAGGTTTTGGCACGATCGAAAGATGGTGCTAACC
CGTATCTCTAAGTTTATAACGGACCGTATTCCCGAAGCTATGGTGGAAAT
CGAGGATGTGGAACAATTGAAGGGGGATGACGCGAAGAGCGTCTCGGATT
TTTACGCGCATTAAGGCACCAGAACGGAATTAGAGAGCAATTTTGACGAT
AACTTGCAAGCTTGTGCTTGTGTTGGTAGCTTTTTTCATCTATTTACCAG
AATCCTTATCCTGTGCGAGCGTGGCTTTCCAATCCGCCTCCAGAACTCGC
CAATTTACGTCGCCCTTGAAATTGCGCGGTACCGCACCCCACCGCATCCG
AGACGGTTGTGCACCTTTGGACACGCATCCCTTAGCATCCCTCACAAAAT
TCTTCTCGACCTCCAGCCTCTTATCCTTGCTTACACCCCTCCCGTCATTG
CCTTCCCCATGATCCTCCGCGGACTGTATCTCAATCGTCACCAGGCAGTC
ATCCTCATGCTCGCTCCCCACCCGCAACCCGACGGCCGCCAGCGCAAAAC
TACCCGGAAGCAAACCGTACCTCTCCTCCGTAAAGAGCG
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Coding sequence (CDS) from alignment at CM002455.1:451699..452837+

>rna171 ID=rna171|Name=rna171|organism=Nannochloropsis gaditana|type=CDS|length=660bp|location=Sequence derived from alignment at CM002455.1:451699..452837+ (Nannochloropsis gaditana)
ATGAGAAAAATGTCACATTATTCGCTTGTGTCTCGTGCGATACCCGTTTC
GATCAGCTCACGTATTTGCGCATCACCCCTCTCCTACACCTCAAGCCCAG
GCTTCTCGTTGCAGCATCAAAGGACGCAGCGGCCTCAATATCTTCCAATG
CTTCATTCAACGACGACATCGCTCTTTCTCGTACTAGGGGCAATGTTGTG
TGCAGTTACCAAAAGTTTCATCCCTGTGCCGGCACGCGCGTCCCGCTCTG
TAACTTACTTCCCTGCAAAGCCCaccgccatctccctcgTGGGCTCTACA
ATGAGACTGACGCCCTACATGTTCATGAGCACGAGCAATTTCGACGAGCC
TCTCATTCTTACTGAGGAGAATGCAGCTTTGGTTCTGGAGGCCGCTCGGC
AAGAGCTTGGTACCATGTTTGGGTACACCAAGGAGAACCAAGCTGTGGGC
ATTACTGGGGAGGTTGACCTGGTGGCCGTTGAGGGCATCAGCATCATCGT
CCGTCTCAAGAACAGGTTTTGGCACGATCGAAAGATGGTGCTAACCCGTA
TCTCTAAGTTTATAACGGACCGTATTCCCGAAGCTATGGTGGAAATCGAG
GATGTGGAACAATTGAAGGGGGATGACGCGAAGAGCGTCTCGGATTTTTA
CGCGCATTAA
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Synonyms
Publications