EWM30545.1, cds171 (CDS) Nannochloropsis gaditana

Overview
NameEWM30545.1
Unique Namecds171
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:451753..452412 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30545.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g48.9833.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:451753..452412 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|585113209|gb|EWM30545.1| (hypothetical protein Naga_100013g48 [Nannochloropsis gaditana])

HSP 1 Score: 453.366 bits (1165), Expect = 2.016e-161
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query:    1 MRKMSHYSLVSRAIPVSISSRICASPLSYTSSPGFSLQHQRTQRPQYLPMLHSTTTSLFLVLGAMLCAVTKSFIPVPARASRSVTYFPAKPTAISLVGSTMRLTPYMFMSTSNFDEPLILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAMVEIEDVEQLKGDDAKSVSDFYAH 219
            MRKMSHYSLVSRAIPVSISSRICASPLSYTSSPGFSLQHQRTQRPQYLPMLHSTTTSLFLVLGAMLCAVTKSFIPVPARASRSVTYFPAKPTAISLVGSTMRLTPYMFMSTSNFDEPLILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAMVEIEDVEQLKGDDAKSVSDFYAH
Sbjct:    1 MRKMSHYSLVSRAIPVSISSRICASPLSYTSSPGFSLQHQRTQRPQYLPMLHSTTTSLFLVLGAMLCAVTKSFIPVPARASRSVTYFPAKPTAISLVGSTMRLTPYMFMSTSNFDEPLILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAMVEIEDVEQLKGDDAKSVSDFYAH 219          
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|298712920|emb|CBJ26822.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 103.219 bits (256), Expect = 6.250e-25
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0
Query:  116 EPLILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAM-VEIEDVEQLKGDD 209
            E LILTEEN   VL  A++EL T+FG   EN AVGITG+ + V ++G S++VRL  RFWH++  VL R+  F+  RIPE + VEIED  QL+  D
Sbjct:    4 ETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDAD 98          
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|1210522120|dbj|GAX18882.1| (hypothetical protein FisN_8Hu097 [Fistulifera solaris])

HSP 1 Score: 105.531 bits (262), Expect = 9.100e-25
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 0
Query:  118 LILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAM-VEIEDVEQL 205
            L L+EEN   VL A RQE+GT+FGYT EN+ VGITG VDLV ++G +II+RLK RFWH+RK VL R++ ++  RIPE + V +ED  QL
Sbjct:  101 LELSEENVLGVLAACRQEVGTLFGYTAENRGVGITGGVDLVDLDGPTIILRLKGRFWHERKTVLERVANYLQQRIPEIIDVIVEDPWQL 189          
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|873222756|emb|CEM30550.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 103.605 bits (257), Expect = 2.479e-24
Identity = 50/98 (51.02%), Postives = 70/98 (71.43%), Query Frame = 0
Query:  115 DEPLILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAM-VEIEDVEQLKGDDAK 211
            ++ LILTEEN    LEA RQEL  +FG ++EN++VGITG+V+   ++G  +I+RLK RFWH R  VL R++ F+ +RIPE + VEIED   L  D+A+
Sbjct:   73 EDQLILTEENVEKTLEACRQELSALFGNSEENRSVGITGDVEFAGLDGPLVILRLKGRFWHSRATVLERVTAFLLNRIPECLGVEIEDPAMLD-DNAE 169          
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|551540595|ref|XP_005758674.1| (hypothetical protein EMIHUDRAFT_249978 [Emiliania huxleyi CCMP1516] >gi|485606424|gb|EOD06245.1| hypothetical protein EMIHUDRAFT_249978 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 101.679 bits (252), Expect = 1.337e-23
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 0
Query:  118 LILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAM-VEIEDVEQLK 206
            L+LTEEN   VL+ A ++LGTMFG   E+ AVGITG  DLV ++G ++++RL  RFWH R  VL R+  F+ +RIPE + VEIED  QL+
Sbjct:   54 LVLTEENVQAVLDEAERDLGTMFGSNPESAAVGITGRADLVELDGPTVVIRLSGRFWHARARVLERLEAFVLERIPECIGVEIEDPSQLE 143          
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|551624691|ref|XP_005792548.1| (hypothetical protein EMIHUDRAFT_222964 [Emiliania huxleyi CCMP1516] >gi|485646763|gb|EOD40119.1| hypothetical protein EMIHUDRAFT_222964 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 99.7525 bits (247), Expect = 7.153e-23
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 0
Query:  118 LILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAM-VEIEDVEQLK 206
            L+LTEEN   VL+ A ++LGTMFG   E+ AVGITG  +LV ++G ++++RL  RFWH R  VL R+  F+ +RIPE + VEIED  QL+
Sbjct:   54 LVLTEENVQAVLDEAERDLGTMFGSNPESAAVGITGRAELVELDGPTVVIRLSGRFWHARARVLERLEAFVLERIPECIGVEIEDPSQLE 143          
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|219127063|ref|XP_002183763.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405000|gb|EEC44945.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 100.138 bits (248), Expect = 1.349e-22
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 0
Query:   97 VGSTMRLTPYMFMSTSNFDEPLILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAM-VEIEDVEQL 205
            +GS+++  P +  S      P  LTEE    VL A R ELGT+FGY+ EN+ VGITG VD V ++G S+I+ LK RFWH R  VL R+  ++  RIPE + V++ED  QL
Sbjct:   87 IGSSLK-APTIDRSADPIQVPAELTEETVLGVLSACRGELGTLFGYSAENRGVGITGGVDYVDLDGPSVILSLKGRFWHQRTAVLERVGNYLQQRIPEIVDVQVEDPWQL 195          
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|397613260|gb|EJK62113.1| (hypothetical protein THAOC_17288 [Thalassiosira oceanica])

HSP 1 Score: 97.8265 bits (242), Expect = 1.463e-21
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 0
Query:  118 LILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAM-VEIEDVEQLKGDDAKSVS 214
            L L EE    VL A RQE+GTMFGY  EN+ VGITG VD V ++G ++IV LK RFWH R  VL+R+S ++  RIPE + V +ED  QL  D+A   +
Sbjct:  117 LALDEETVQGVLAACRQEIGTMFGYQAENRGVGITGGVDFVDLDGPTVIVSLKGRFWHQRPTVLSRVSSYLIARIPEIVEVIVEDEYQLT-DEANDAA 213          
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|223999573|ref|XP_002289459.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974667|gb|EED92996.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 96.6709 bits (239), Expect = 2.819e-21
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 0
Query:  113 NFDEPLI---------LTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAM-VEIEDVEQLKGDDAKSVS 214
            ++D PLI         L+EE    VL A RQE+GTMFGY  EN+ VGITG VD V ++G ++++ LK RFWH R  VL R+  ++  RIPE + V ++D  +L  D+A + S
Sbjct:   96 DYDGPLIDVPQGSQLELSEETVQGVLAACRQEIGTMFGYQAENRGVGITGGVDFVELDGPTVVLHLKGRFWHQRPTVLNRVGAYLMARIPEIVDVTVQDEYELT-DEANNAS 206          
BLAST of EWM30545.1 vs. NCBI_GenBank
Match: gi|922865166|gb|KOO32279.1| (hypothetical protein Ctob_010676 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 96.2857 bits (238), Expect = 2.822e-21
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 0
Query:  117 PLILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAM-VEIEDVEQLKGDDAKSVSDFYAH 219
            P  LTEENA  VL+   ++LGT+FG   E+ AVGITG  D V +EG  +++ L  RFWH R MV+ R+ K++ DRIPE + VEI DV QL   +   + + +A 
Sbjct:    7 PRELTEENARAVLQECMEDLGTLFGSNAESLAVGITGAADFVDLEGPILVISLSGRFWHQRSMVVERVKKYVMDRIPECVDVEIVDVAQLDDTNPTDLEEKFAE 110          
The following BLAST results are available for this feature:
BLAST of EWM30545.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113209|gb|EWM30545.1|2.016e-161100.00hypothetical protein Naga_100013g48 [Nannochlorops... [more]
gi|298712920|emb|CBJ26822.1|6.250e-2552.63conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210522120|dbj|GAX18882.1|9.100e-2558.43hypothetical protein FisN_8Hu097 [Fistulifera sola... [more]
gi|873222756|emb|CEM30550.1|2.479e-2451.02unnamed protein product [Vitrella brassicaformis C... [more]
gi|551540595|ref|XP_005758674.1|1.337e-2353.33hypothetical protein EMIHUDRAFT_249978 [Emiliania ... [more]
gi|551624691|ref|XP_005792548.1|7.153e-2352.22hypothetical protein EMIHUDRAFT_222964 [Emiliania ... [more]
gi|219127063|ref|XP_002183763.1|1.349e-2247.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397613260|gb|EJK62113.1|1.463e-2152.04hypothetical protein THAOC_17288 [Thalassiosira oc... [more]
gi|223999573|ref|XP_002289459.1|2.819e-2144.64predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|922865166|gb|KOO32279.1|2.822e-2146.15hypothetical protein Ctob_010676 [Chrysochromulina... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna171rna171Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications