rna1707, rna1707 (mRNA) Nannochloropsis gaditana

Overview
Namerna1707
Unique Namerna1707
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length937
Alignment locationCM002457.1:1297079..1298193 +

Link to JBrowse

Properties
Property NameValue
Productpyruvate dehydrogenase
Orig transcript idgnl|cribi|Naga_101324g2.9875.mrna
Orig protein idgnl|cribi|Naga_101324g2.9875
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1297079..1298193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101324g2gene1642Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1707rna1707-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28970.1cds1703Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1707 ID=rna1707|Name=rna1707|organism=Nannochloropsis gaditana|type=mRNA|length=937bp
GTACGCGATCTCTGTGCGAAATTTCTTATCTTTTGTTTTTCTCCCCTCTT
TTTCATTTTAATGTGTTCGTGTTGACTGGTGGTGATGGGAAAGTATCCTA
CCCTCCGTCCTACCCGTGTATATTTTTTCAAACAGGTTCATCGATGGTCA
AACTTAGCAGAAGCAGCAAAAGGGTGACGACGCAGTCTGAGAAAGGAGGC
AGAGAAATTGGAAAAACAGGAGGAGAGGGGGGAAAGCGCAGTCGTGGTGG
GGATAGCACGGAGGATGTGTTGGCAAGGGGAGGACAAGGAGGAGGGCGGG
GAAGAGAAGGAGAGGAGAAGAAAGAAACCAAGGATAATTTACGGTTCGAA
GATCCATACGAAGATGAGTTTGAGGAGGAGGAGGAGATGGAGGAGGTAGT
GGAGCTTGATTCGGACGAGGAGGAGGGTATGGACTTGGAAGCGTTCAGAG
CAGGTCGTGCAGGCCGGGCGCTCGGCGAGGATGACATGGAGACGGAAGAG
GCGGCCACCAGTGCGGTCCCCAAAGTGTATTGCCCGGGCATGGAACACGA
ATTGAAGGAGGGGGAGGAATTAGTGTATGACCCGAGTGCTTACCTCATGT
ACCATCGGCTGACGCCCGAATGGCCATGTCTGAGTTTTGATATACTCCAG
GACACCTTGGGGGGCGGGCGCACGCGGTTCCCCATCACCATGTATGCGGC
CTGCGGGACCCAAGCCGACGTCGCGGGGAAGAACAAGCTGACGGTGATGA
AGCTGACGAATATGACCAAGACCTACCGGAGAGGCGGACAGGAGAGCGAC
AGCGAGGAGGAGGAGGAGGACGAGGAGGAGGAAGGGATGGAGGGTAGATC
CGCTCTTGGAGCAGTGTAGCATCGAGCATCGGGGAGGGTGCGTGAGGAAG
GGGGGCGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGG
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protein sequence of rna1707

>rna1707-protein ID=rna1707-protein|Name=rna1707|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
MLSLLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCL
GEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLP
PSLLPSFPPSLLPSHLPSLLPSLPRAWPRVTIPRCFLPTSLPCPP
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mRNA from alignment at CM002457.1:1297079..1298193+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1707 ID=rna1707|Name=rna1707|organism=Nannochloropsis gaditana|type=mRNA|length=1115bp|location=Sequence derived from alignment at CM002457.1:1297079..1298193+ (Nannochloropsis gaditana)
TTCAGGACCGGTGCACAGGCGGCATTGGGGCGTGTTGGGCTTGTGGTTGT
GCGTGTTGAGTTGATTCCTCCCGGACGCATCTCACTACCATTACCGCTCG
TTGCCTGGAGTGAGCTCCCCTGACGCGTACAGCTACTTCGTTTTGCGCCA
GAACCACCAGCTATGCTCTCGCTCTTAGCTAGGCGGAGCtcgatggcggt
ggtggcgggcacggggagaagaagcatgGCCACGATAGAGGTAAATTTGA
CAagcagcgggagaggaaggagggcgtggcatGAAATTCATCATCTGGGC
GGTACCAACCACACGCCATTCTATGGACGCCGATGCTTGCATGCTTTTTT
ATTGCTCATCTTTGCACGTTTGTAGATGGCCTTCACTTATCCTGCTCCTG
CCCATTTTTGTCAGCACTTGCGCCTTTTTCTTGCGCCGGCACCGGCTCCC
CTCTCATTTCATGTGCCCggcctgtccctctcctgtTTCTTGCACTTGGG
ACCGTTGAAATGTTGAAATCGTCAGTTCCTACTTTCCCGTCTTTTCTTTG
TCCCCCTGTGCAGGTACCCGTGCGGGAGGCGATCAATCAGGCCATTGATG
AGGAGATGGCGCGCGACCCCAACGTCTTTTgcctcggggaggaggtggcg
cagTATCAGGGAGCCTACAAAGTAAGAGAGGAGAAATCAAAGGATcgctg
gaaggggaggggggaaggaacggaATGAGGAAGGGTGAGCCTGCATGCGG
CAGAAGGAATgtgtgagggggaggaagggaaggaggaggggaagggaggg
caagagggaaaaggacctGGCGGGCGCGACAGACTGGAAACgtctcattc
cctccccggaCGCAGATCACCAAGGGGCTGTATCAGAAGTATGGGGACAA
GCGGGTCATCGATACTCCCATTACGGAGATGGGGTTTGCGGGGCTCGCCG
TCGGTATGTcggggcctccctccctccctccctccctacttccttccttc
cctccctccctccttccctcccaccttccctccctccttccctccctccc
tcgggcgtGGCCACGTGTCACTATACCACGGTGCTTCCTACCCACATCgc
tgccatgtcctccct
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Coding sequence (CDS) from alignment at CM002457.1:1297079..1298193+

>rna1707 ID=rna1707|Name=rna1707|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002457.1:1297079..1298193+ (Nannochloropsis gaditana)
ATGCTCTCGCTCTTAGCTAGGCGGAGCtcgatggcggtggtggcgggcac
ggggagaagaagcatgGCCACGATAGAGGTACCCGTGCGGGAGGCGATCA
ATCAGGCCATTGATGAGGAGATGGCGCGCGACCCCAACGTCTTTTgcctc
ggggaggaggtggcgcagTATCAGGGAGCCTACAAAATCACCAAGGGGCT
GTATCAGAAGTATGGGGACAAGCGGGTCATCGATACTCCCATTACGGAGA
TGGGGTTTGCGGGGCTCGCCGTCGGTATGTcggggcctccctccctccct
ccctccctacttccttccttccctccctccctccttccctcccaccttcc
ctccctccttccctccctccctcgggcgtGGCCACGTGTCACTATACCAC
GGTGCTTCCTACCCACATCgctgccatgtcctccctATGCTCTCGCTCTT
AGCTAGGCGGAGCtcgatggcggtggtggcgggcacggggagaagaagca
tgGCCACGATAGAGGTACCCGTGCGGGAGGCGATCAATCAGGCCATTGAT
GAGGAGATGGCGCGCGACCCCAACGTCTTTTgcctcggggaggaggtggc
gcagTATCAGGGAGCCTACAAAATCACCAAGGGGCTGTATCAGAAGTATG
GGGACAAGCGGGTCATCGATACTCCCATTACGGAGATGGGGTTTGCGGGG
CTCGCCGTCGGTATGTcggggcctccctccctccctccctccctacttcc
ttccttccctccctccctccttccctcccaccttccctccctccttccct
ccctccctcgggcgtGGCCACGTGTCACTATACCACGGTGCTTCCTACCC
ACATCgctgccatgtcctccctATGCTCTCGCTCTTAGCTAGGCGGAGCt
cgatggcggtggtggcgggcacggggagaagaagcatgGCCACGATAGAG
GTACCCGTGCGGGAGGCGATCAATCAGGCCATTGATGAGGAGATGGCGCG
CGACCCCAACGTCTTTTgcctcggggaggaggtggcgcagTATCAGGGAG
CCTACAAAATCACCAAGGGGCTGTATCAGAAGTATGGGGACAAGCGGGTC
ATCGATACTCCCATTACGGAGATGGGGTTTGCGGGGCTCGCCGTCGGTAT
GTcggggcctccctccctccctccctccctacttccttccttccctccct
ccctccttccctcccaccttccctccctccttccctccctccctcgggcg
tGGCCACGTGTCACTATACCACGGTGCTTCCTACCCACATCgctgccatg
tcctccct
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Synonyms
Publications