EWM28970.1, cds1703 (CDS) Nannochloropsis gaditana

Overview
NameEWM28970.1
Unique Namecds1703
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1297241..1297318 +
Alignment locationCM002457.1:1297642..1297749 +
Alignment locationCM002457.1:1297944..1298193 +

Link to JBrowse

Properties
Property NameValue
End range.
End range1298193
Protein idEWM28970.1
Productpyruvate dehydrogenase
Partialtrue
Orig transcript idgnl|cribi|Naga_101324g2.9875.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1297241..1297318 +
CM002457.1supercontigCM002457.1:1297642..1297749 +
CM002457.1supercontigCM002457.1:1297944..1298193 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006086acetyl-CoA biosynthetic process from pyruvate
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004739pyruvate dehydrogenase (acetyl-transferring) activity
Vocabulary: INTERPRO
TermDefinition
IPR027110PDHB
IPR029061THDP-binding
IPR005475Transketolase-like_Pyr-bd
Homology
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|585111458|gb|EWM28970.1| (pyruvate dehydrogenase, partial [Nannochloropsis gaditana])

HSP 1 Score: 291.967 bits (746), Expect = 6.976e-100
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query:    1 MLSLLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSLLPSHLPSLLPSLPRAWPRVTIPRCFLPTSLPCPP 145
            MLSLLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSLLPSHLPSLLPSLPRAWPRVTIPRCFLPTSLPCPP
Sbjct:    1 MLSLLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSLLPSHLPSLLPSLPRAWPRVTIPRCFLPTSLPCPP 145          
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|219118825|ref|XP_002180179.1| (precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408436|gb|EEC48370.1| precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 137.502 bits (345), Expect = 1.799e-36
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 0
Query:    1 MLSLLARRSSMAVVAGTG----RRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
            MLS L R S+  + + +G    RR+ ATI++ +REAIN  IDEEMARD +VF +GEEVAQYQGAYK+TKGLY+KYGDKRVIDTPITEMGF GLAVG
Sbjct:    1 MLSFL-RHSTTTIASRSGAPVSRRAFATIDMTIREAINAGIDEEMARDESVFIIGEEVAQYQGAYKVTKGLYEKYGDKRVIDTPITEMGFTGLAVG 95          
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|299471547|emb|CBN80033.1| (pyruvate dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 133.265 bits (334), Expect = 8.363e-35
Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 0
Query:   19 RRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSL 111
            +RSM TIEV VREAINQ +DEEM RD  VF +GEEVAQYQGAYK+TKGLYQKYG++RVIDTPITEMGF GLA G +     P     +F  SL
Sbjct:   27 KRSMGTIEVAVREAINQGLDEEMGRDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSL 119          
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|1210527064|dbj|GAX14194.1| (pyruvate dehydrogenase E1 component beta subunit [Fistulifera solaris])

HSP 1 Score: 130.568 bits (327), Expect = 8.158e-34
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 0
Query:    1 MLSLLARRSSMAV-----VAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
            MLS  +R S + V     +A + R   A  +V VREAIN AIDEEM RD +VF LGEEVAQYQGAYK+TKGLY+KYGDKRVIDTPITEMGF GLA+G
Sbjct:    1 MLSNFSRHSFVRVGKSSALAKSTRSFAAATQVAVREAINAAIDEEMERDESVFILGEEVAQYQGAYKVTKGLYEKYGDKRVIDTPITEMGFTGLAIG 97          
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|224013552|ref|XP_002296440.1| (pyruvate dehydrogenase [Thalassiosira pseudonana CCMP1335] >gi|220968792|gb|EED87136.1| pyruvate dehydrogenase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 128.642 bits (322), Expect = 2.708e-33
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 0
Query:   22 MATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
            MAT EV VR+AINQAIDEEM RD  VF LGEEVAQYQGAYK+TKGL+QKYG KRVIDTPITEMGF G+A+G
Sbjct:    1 MATTEVTVRDAINQAIDEEMERDEKVFILGEEVAQYQGAYKVTKGLFQKYGSKRVIDTPITEMGFTGMAIG 71          
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|1210512024|dbj|GAX28879.1| (pyruvate dehydrogenase E1 component beta subunit [Fistulifera solaris])

HSP 1 Score: 129.028 bits (323), Expect = 2.844e-33
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 0
Query:    1 MLSLLARRSSMAV-----VAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
            MLS  +R S + V     +A + R   A  ++ VREAIN AIDEEM RD +VF LGEEVAQYQGAYK+TKGLY+KYGDKRVIDTPITEMGF GLA+G
Sbjct:    1 MLSSFSRNSFVRVAKSSALAKSTRAFTAATQMAVREAINAAIDEEMERDESVFILGEEVAQYQGAYKVTKGLYEKYGDKRVIDTPITEMGFTGLAIG 97          
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|397632164|gb|EJK70442.1| (hypothetical protein THAOC_08200 [Thalassiosira oceanica])

HSP 1 Score: 126.331 bits (316), Expect = 3.883e-33
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0
Query:   19 RRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
            +RSMAT+++ VR+AIN AIDEEM RD  V+ LGEEVAQY GAYK+TKGLYQKYG KRVIDTPITEMGF G+A+G
Sbjct:   49 KRSMATVDMTVRDAINSAIDEEMDRDEKVYVLGEEVAQYDGAYKVTKGLYQKYGAKRVIDTPITEMGFTGMAIG 122          
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|350538309|ref|NP_001232565.1| (putative pyruvate dehydrogenase E1-beta subunit variant 1 [Taeniopygia guttata] >gi|197128635|gb|ACH45133.1| putative pyruvate dehydrogenase E1-beta subunit variant 1 [Taeniopygia guttata])

HSP 1 Score: 118.242 bits (295), Expect = 1.403e-31
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 0
Query:   23 ATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
            A I+V VR+A+NQA+DEE+ RD  VF LGEEVAQY GAYKI++GL++KYGDKRVIDTPI+EMGFAG+AVG
Sbjct:   41 AAIQVTVRDALNQALDEELERDERVFLLGEEVAQYDGAYKISRGLWKKYGDKRVIDTPISEMGFAGIAVG 110          
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|907612886|ref|XP_013118462.1| (PREDICTED: uncharacterized protein LOC106095711 isoform X2 [Stomoxys calcitrans])

HSP 1 Score: 122.865 bits (307), Expect = 2.878e-31
Identity = 63/120 (52.50%), Postives = 81/120 (67.50%), Query Frame = 0
Query:    1 MLSLLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSLLPSHLPSLL 120
            + S +ARR        T  R++A  ++ VR+A+N A+D+EMARD  VF LGEEVAQY GAYKI++GL++KYGDKRVIDTPITEMGFAG+AVG +     P     +F  S+      SLL
Sbjct:    8 IFSSVARRGF-----ATTNRALAAQQMTVRDALNSALDDEMARDERVFILGEEVAQYDGAYKISRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHASLL 122          
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|38048439|gb|AAR10122.1| (similar to Drosophila melanogaster CG11876, partial [Drosophila yakuba])

HSP 1 Score: 119.013 bits (297), Expect = 5.470e-31
Identity = 53/89 (59.55%), Postives = 71/89 (79.78%), Query Frame = 0
Query:    4 LLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
            L+   SS      T ++++A  ++ VR+A+N A+D+E+ARD  VF LGEEVAQY GAYK+++GL++KYGDKRVIDTPITEMGFAG+AVG
Sbjct:    6 LIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVFILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPITEMGFAGIAVG 94          
The following BLAST results are available for this feature:
BLAST of EWM28970.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111458|gb|EWM28970.1|6.976e-100100.00pyruvate dehydrogenase, partial [Nannochloropsis g... [more]
gi|219118825|ref|XP_002180179.1|1.799e-3668.75precursor of dehydrogenase pyruvate dehydrogenase ... [more]
gi|299471547|emb|CBN80033.1|8.363e-3567.74pyruvate dehydrogenase [Ectocarpus siliculosus][more]
gi|1210527064|dbj|GAX14194.1|8.158e-3467.01pyruvate dehydrogenase E1 component beta subunit [... [more]
gi|224013552|ref|XP_002296440.1|2.708e-3381.69pyruvate dehydrogenase [Thalassiosira pseudonana C... [more]
gi|1210512024|dbj|GAX28879.1|2.844e-3365.98pyruvate dehydrogenase E1 component beta subunit [... [more]
gi|397632164|gb|EJK70442.1|3.883e-3375.68hypothetical protein THAOC_08200 [Thalassiosira oc... [more]
gi|350538309|ref|NP_001232565.1|1.403e-3174.29putative pyruvate dehydrogenase E1-beta subunit va... [more]
gi|907612886|ref|XP_013118462.1|2.878e-3152.50PREDICTED: uncharacterized protein LOC106095711 is... [more]
gi|38048439|gb|AAR10122.1|5.470e-3159.55similar to Drosophila melanogaster CG11876, partia... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1707rna1707Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications