EWM28970.1, cds1703 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|585111458|gb|EWM28970.1| (pyruvate dehydrogenase, partial [Nannochloropsis gaditana]) HSP 1 Score: 291.967 bits (746), Expect = 6.976e-100 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query: 1 MLSLLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSLLPSHLPSLLPSLPRAWPRVTIPRCFLPTSLPCPP 145
MLSLLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSLLPSHLPSLLPSLPRAWPRVTIPRCFLPTSLPCPP
Sbjct: 1 MLSLLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSLLPSHLPSLLPSLPRAWPRVTIPRCFLPTSLPCPP 145
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|219118825|ref|XP_002180179.1| (precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408436|gb|EEC48370.1| precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 137.502 bits (345), Expect = 1.799e-36 Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 1 MLSLLARRSSMAVVAGTG----RRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
MLS L R S+ + + +G RR+ ATI++ +REAIN IDEEMARD +VF +GEEVAQYQGAYK+TKGLY+KYGDKRVIDTPITEMGF GLAVG
Sbjct: 1 MLSFL-RHSTTTIASRSGAPVSRRAFATIDMTIREAINAGIDEEMARDESVFIIGEEVAQYQGAYKVTKGLYEKYGDKRVIDTPITEMGFTGLAVG 95
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|299471547|emb|CBN80033.1| (pyruvate dehydrogenase [Ectocarpus siliculosus]) HSP 1 Score: 133.265 bits (334), Expect = 8.363e-35 Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 0
Query: 19 RRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSL 111
+RSM TIEV VREAINQ +DEEM RD VF +GEEVAQYQGAYK+TKGLYQKYG++RVIDTPITEMGF GLA G + P +F SL
Sbjct: 27 KRSMGTIEVAVREAINQGLDEEMGRDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSL 119
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|1210527064|dbj|GAX14194.1| (pyruvate dehydrogenase E1 component beta subunit [Fistulifera solaris]) HSP 1 Score: 130.568 bits (327), Expect = 8.158e-34 Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 0
Query: 1 MLSLLARRSSMAV-----VAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
MLS +R S + V +A + R A +V VREAIN AIDEEM RD +VF LGEEVAQYQGAYK+TKGLY+KYGDKRVIDTPITEMGF GLA+G
Sbjct: 1 MLSNFSRHSFVRVGKSSALAKSTRSFAAATQVAVREAINAAIDEEMERDESVFILGEEVAQYQGAYKVTKGLYEKYGDKRVIDTPITEMGFTGLAIG 97
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|224013552|ref|XP_002296440.1| (pyruvate dehydrogenase [Thalassiosira pseudonana CCMP1335] >gi|220968792|gb|EED87136.1| pyruvate dehydrogenase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 128.642 bits (322), Expect = 2.708e-33 Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 0
Query: 22 MATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
MAT EV VR+AINQAIDEEM RD VF LGEEVAQYQGAYK+TKGL+QKYG KRVIDTPITEMGF G+A+G
Sbjct: 1 MATTEVTVRDAINQAIDEEMERDEKVFILGEEVAQYQGAYKVTKGLFQKYGSKRVIDTPITEMGFTGMAIG 71
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|1210512024|dbj|GAX28879.1| (pyruvate dehydrogenase E1 component beta subunit [Fistulifera solaris]) HSP 1 Score: 129.028 bits (323), Expect = 2.844e-33 Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 0
Query: 1 MLSLLARRSSMAV-----VAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
MLS +R S + V +A + R A ++ VREAIN AIDEEM RD +VF LGEEVAQYQGAYK+TKGLY+KYGDKRVIDTPITEMGF GLA+G
Sbjct: 1 MLSSFSRNSFVRVAKSSALAKSTRAFTAATQMAVREAINAAIDEEMERDESVFILGEEVAQYQGAYKVTKGLYEKYGDKRVIDTPITEMGFTGLAIG 97
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|397632164|gb|EJK70442.1| (hypothetical protein THAOC_08200 [Thalassiosira oceanica]) HSP 1 Score: 126.331 bits (316), Expect = 3.883e-33 Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0
Query: 19 RRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
+RSMAT+++ VR+AIN AIDEEM RD V+ LGEEVAQY GAYK+TKGLYQKYG KRVIDTPITEMGF G+A+G
Sbjct: 49 KRSMATVDMTVRDAINSAIDEEMDRDEKVYVLGEEVAQYDGAYKVTKGLYQKYGAKRVIDTPITEMGFTGMAIG 122
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|350538309|ref|NP_001232565.1| (putative pyruvate dehydrogenase E1-beta subunit variant 1 [Taeniopygia guttata] >gi|197128635|gb|ACH45133.1| putative pyruvate dehydrogenase E1-beta subunit variant 1 [Taeniopygia guttata]) HSP 1 Score: 118.242 bits (295), Expect = 1.403e-31 Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 0
Query: 23 ATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
A I+V VR+A+NQA+DEE+ RD VF LGEEVAQY GAYKI++GL++KYGDKRVIDTPI+EMGFAG+AVG
Sbjct: 41 AAIQVTVRDALNQALDEELERDERVFLLGEEVAQYDGAYKISRGLWKKYGDKRVIDTPISEMGFAGIAVG 110
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|907612886|ref|XP_013118462.1| (PREDICTED: uncharacterized protein LOC106095711 isoform X2 [Stomoxys calcitrans]) HSP 1 Score: 122.865 bits (307), Expect = 2.878e-31 Identity = 63/120 (52.50%), Postives = 81/120 (67.50%), Query Frame = 0
Query: 1 MLSLLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVGMSGPPSLPPSLLPSFPPSLLPSHLPSLL 120
+ S +ARR T R++A ++ VR+A+N A+D+EMARD VF LGEEVAQY GAYKI++GL++KYGDKRVIDTPITEMGFAG+AVG + P +F S+ SLL
Sbjct: 8 IFSSVARRGF-----ATTNRALAAQQMTVRDALNSALDDEMARDERVFILGEEVAQYDGAYKISRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHASLL 122
BLAST of EWM28970.1 vs. NCBI_GenBank
Match: gi|38048439|gb|AAR10122.1| (similar to Drosophila melanogaster CG11876, partial [Drosophila yakuba]) HSP 1 Score: 119.013 bits (297), Expect = 5.470e-31 Identity = 53/89 (59.55%), Postives = 71/89 (79.78%), Query Frame = 0
Query: 4 LLARRSSMAVVAGTGRRSMATIEVPVREAINQAIDEEMARDPNVFCLGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAVG 92
L+ SS T ++++A ++ VR+A+N A+D+E+ARD VF LGEEVAQY GAYK+++GL++KYGDKRVIDTPITEMGFAG+AVG
Sbjct: 6 LIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVFILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPITEMGFAGIAVG 94 The following BLAST results are available for this feature:
BLAST of EWM28970.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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