rna1702, rna1702 (mRNA) Nannochloropsis gaditana

Overview
Namerna1702
Unique Namerna1702
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2016
Alignment locationCM002457.1:1289454..1290860 -

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Properties
Property NameValue
ProductTRX domain-containing protein
Orig transcript idgnl|cribi|Naga_100773g1.7442.mrna
Orig protein idgnl|cribi|Naga_100773g1.7442
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1289454..1290860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100773g1gene1638Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1702rna1702-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28972.1cds1698Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1702 ID=rna1702|Name=rna1702|organism=Nannochloropsis gaditana|type=mRNA|length=2016bp
CCACTAAATCGACTTTCCGCAGCATTCAACACTACGTCTTGATAGAAATG
ATGATGAAGAACTGCTCGTCAGTCCAGTTTGTGCTTGGGAAGTGGTTCTT
TTCTTGCAGGGCAAGATGGGATGGTTGCGGCAGTCTCGCGCGTCGAGGCT
TCAACTTGCCATTTATTTTCCGCCTTTCTTAAAGATATACTTATGTGTTG
TTTTTGTTTCAGTTAGTGCGGCACAGTCTTTCTAGAGTAGAGTATCGGGT
GGTCAGACGTACATCGTGACCTTTTGCACGCCCTCGCGCGCTTGTTTTAC
AGGTAAGTCTTACAACTGGCAGAATATGCTCCTGGTAGTTAGCCGAATGG
CCTCCAGGCTACAATGTAGAATAAGCATTAGACCGCGATTCAAATGAGAT
CCACCAGCATCAACCAAGCTGTAAGGTGCACATACGTTGCTGATATCATA
CTGAAGGCGCTCCATGGGCGGACTTGACCGTGTGTTTATTTATAGGACTG
CGTCTGGCATTAGAGCAGGCAATCAAAGGGACCATGTTCGCCAACCCAGT
GCGTCTCCATTTCTGTGCTAATAGCCAGACTGAGTGTGAATTTTCATTGA
CCGTAAATCTTGGCTGCGATTTCTGTACTTTTTGCTAAAGTGCCGTTCAT
AATTTTACCCGTCACCCTCCCCTCCTTTCTCAGGCGCAATGCCGACCTCC
CCCCAAGCTATGTACGTGCCGTTTTCTCACCGTCTCGAATGGCAAGATGT
CACGCCTATCCCGCAAGACGATCTCCCCGCGTCCTCCCTCGTGGTCCCTA
TCGACTATCCGGACGAGTACCGCGATGCCACGGAGTACATGCGGGCGGCT
TTGGTCACTGGGGAACGGTCTCGGCGCGTGCACGGTCTAGCAGGGGAGGT
CATAGAAATGAATGCCGCACACTACACGGCCTGGTGGCTGAGACGACGCT
GTTTGGAAGCAATGGTAGCGGAAACAACAGCCCAGGACAATGCGGGGGAT
AAGGAAATGGATGAGGCCGTGGAGGAGCTTTACGATGCGGAGCTGGCCTT
CGCCCTGCGTATTTCGGATGAAAACCCCAAGAACTATCAGGTGTGGTTTC
ACCGGCAGACCATTATTGCGGAGACTGAGGACCCGGCTGGGGAGCTGGAA
ATTTCGACGCGGGCCTTGAGGAAGGACGCCAAGAACTACCATGTATGGGC
CTATCGCCAATGGATTCTCAAAACCTTCCAGGCAGGCTGGGAGGAGGAAA
TGGCATTCGTTGACACCTTGCTTAAAGAGGACAGACGCAACAACAGCGCC
TGGAACCAACGATGGTTCGTCGTGCACACCCACGAGCTCTCTCCTTACCA
TCTGGAGAGGGAGGGAGGAAGGGGTGGAGGGAAAGCGGATGCCATTCGGG
AGCGGGAGATGGCATACGCATGGGATTCCGTACTGGAGGAGGGAGCCGGC
CTGGCGGGGGGCGGGGGCGGGGAAGGAAAGGAAGGTAGACTAGGAGATAA
TGAGAGTGCTTGGATGTATTTACGCGGATACCTGAGGGAAACGGGGTACC
GAGCATCGGGCTGGCGGGAGCGGCTTGTGAACGCGGTCGAGGAGGGAGGG
GGGAGGGAGGGCGGGAGGGGGAGGTGGCAAGGCGGGTCTGTGTACCACTC
CGAGCCTTGTTAATAGACATGTACGAGACGATGGGGGACGAGACAAGCCT
GATGGAGGCCGTGGCACTGGCGGAAGGCTTGGCAGAGAGGTGGGATGTAA
GCCGGCGAAAGTATTGGTCACTGGCGGTGGTCAATCGGATCAATCGTAAA
TTGGTGAGAGATATCACCACCCCGGTGGAAAGGGGAGGAGAAGAATGATG
GTGAGGGGGGGTGGGAAGACCCTGCCTGTACGTAGGGGGCAACGAGGCGG
AGAGGGAGGGGCCGTAACAACAACAATGCTTTACAGACGACGTGTGGATG
CCAAACGTACGAAAAAGACGGGAAAACGTGTGGAAGCGTTTGCAACCAAG
CCAACTGATTTTCTTC
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protein sequence of rna1702

>rna1702-protein ID=rna1702-protein|Name=rna1702|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MPRSSIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGII
EAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFD
AMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNK
GTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLD
ECLEAR
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mRNA from alignment at CM002457.1:1289454..1290860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1702 ID=rna1702|Name=rna1702|organism=Nannochloropsis gaditana|type=mRNA|length=1407bp|location=Sequence derived from alignment at CM002457.1:1289454..1290860- (Nannochloropsis gaditana)
GTTGGACCCAAGCCTTCGCGTGAAATGAGCAGAGAAAAACTTTCAATTAT
CTGGCTCAGAGGTTGGGATAAGACGCGAACGTCTCCGCCTGGCTCGTTTT
TTGTTGCTTTTGCACAGGCATGGAAGGTTTTTGACTGCCCGAGGATAGGG
ATGATTTGGGGCCATATGCTGCGTCTGCATGGAGAGCAACCAATGTTTTT
ACAATTTCGACGCATCGGAGGCAAATAAAATAATTATGATTCCATGAGAG
CTTAAGTTTTTGCGCTATCGTATAACCTTTTACCAGCATAAGCGTGCTTT
TACAGGGAAATTTCCCCTCTCATGCTTTGCTTGGAGCATCTTTTCGTTTT
TTGCCCATGATGCTGGGTAGTGTATCAACCCCTCGCGCATCACCCCTGCG
AAAATACCACAATAAACAGCTCTATCGCTGCTTCTATCCAGTCGAAAAGC
AAGTACAGTTAAATTTTACCCGGTGTCGAGTCCATGCCGCGTTCATCGAT
CCCTCCAATGCCCCCAGGCGCGGCTGCCGCTCCTGCACTGATCGCGCCAA
AGGTGGTCGTGGAGGTGAGTTAAACGATGCAAAGTGCGCAAAGCAGTTTG
GTAAAAATAAAAAGGTATCAAGTGCCACCAACAAGAGACATGTGTCTTGT
CATTAGCAGATGGAAGCTAGCATTTTCGTTTCTTGTGGACGCCAAAGTAC
CGTTCCTCCGCATGCTAATTACCTACCCCTTGGGTATTTGCATGCCCTTT
ACCGATTCCCATCCGTCTTGCCCTCGTTCCCTAAAGCATGCAAACAAGTG
TGTAACAAGTGTGCTTATCCCAAGCGTTGTTGGAATTCAGCTTTCTCCTT
CTTTTTCACTCCTCTAGGTGTTTCTCGACTTGAATTGTCCTCCGTCCCGA
CGATGTTTCAAGACACTCTATGAGGGCGGCATCATCGAGGCCTACAAGGA
CAAGGCCGTGCAAATTCTCTTTCACAACGTCATTCAGCCTTGGCACGCTG
TGGGTGCTTGGATGCACGAGGCCGCTCTGGCCGTGAAGGACCTGCAGCCG
TCCGCGTTCTACCCGTACGCCAACAAGGTATTCGACGCCATGGAGCGCTT
CTCCGACGTGAACACGGAGGAAATGACTCGAAAAGAGGTGATGGCCGCGC
TGATTGCCCTGGGCGTGGAGGCGGGAGTCCCGCGGCCGGCCTTGGAGGAG
CGGCTCGCCTTGCAGGGAGGTAGCAGTGGGAATAAAGGCACAGCCACGAC
CCAAGCTGTGAAATGGGCGTGTAAATATCACCGGCGCCGAGGCGTGCACG
TCACGCCCACGGTGTTTGTGAACGGATTGGAGGCCAGCGAGGTCTCGAGC
GCGTGGGGCGTGGAGGAATGGCAGAGGCTCCTGGACGAGTGCCTGGAGGC
GAGATGA
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Coding sequence (CDS) from alignment at CM002457.1:1289454..1290860-

>rna1702 ID=rna1702|Name=rna1702|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002457.1:1289454..1290860- (Nannochloropsis gaditana)
GTGTTTCTCGACTTGAATTGTCCTCCGTCCCGACGATGTTTCAAGACACT
CTATGAGGGCGGCATCATCGAGGCCTACAAGGACAAGGCCGTGCAAATTC
TCTTTCACAACGTCATTCAGCCTTGGCACGCTGTGGGTGCTTGGATGCAC
GAGGCCGCTCTGGCCGTGAAGGACCTGCAGCCGTCCGCGTTCTACCCGTA
CGCCAACAAGGTATTCGACGCCATGGAGCGCTTCTCCGACGTGAACACGG
AGGAAATGACTCGAAAAGAGGTGATGGCCGCGCTGATTGCCCTGGGCGTG
GAGGCGGGAGTCCCGCGGCCGGCCTTGGAGGAGCGGCTCGCCTTGCAGGG
AGGTAGCAGTGGGAATAAAGGCACAGCCACGACCCAAGCTGTGAAATGGG
CGTGTAAATATCACCGGCGCCGAGGCGTGCACGTCACGCCCACGGTGTTT
GTGAACGGATTGGAGGCCAGCGAGGTCTCGAGCGCGTGGGGCGTGGAGGA
ATGGCAGAGGCTCCTGGACGAGTGCCTGGAGGCGAGATGAATGCCGCGTT
CATCGATCCCTCCAATGCCCCCAGGCGCGGCTGCCGCTCCTGCACTGATC
GCGCCAAAGGTGGTCGTGGAGGTGTTTCTCGACTTGAATTGTCCTCCGTC
CCGACGATGTTTCAAGACACTCTATGAGGGCGGCATCATCGAGGCCTACA
AGGACAAGGCCGTGCAAATTCTCTTTCACAACGTCATTCAGCCTTGGCAC
GCTGTGGGTGCTTGGATGCACGAGGCCGCTCTGGCCGTGAAGGACCTGCA
GCCGTCCGCGTTCTACCCGTACGCCAACAAGGTATTCGACGCCATGGAGC
GCTTCTCCGACGTGAACACGGAGGAAATGACTCGAAAAGAGGTGATGGCC
GCGCTGATTGCCCTGGGCGTGGAGGCGGGAGTCCCGCGGCCGGCCTTGGA
GGAGCGGCTCGCCTTGCAGGGAGGTAGCAGTGGGAATAAAGGCACAGCCA
CGACCCAAGCTGTGAAATGGGCGTGTAAATATCACCGGCGCCGAGGCGTG
CACGTCACGCCCACGGTGTTTGTGAACGGATTGGAGGCCAGCGAGGTCTC
GAGCGCGTGGGGCGTGGAGGAATGGCAGAGGCTCCTGGACGAGTGCCTGG
AGGCGAGATGAATGCCGCGTTCATCGATCCCTCCAATGCCCCCAGGCGCG
GCTGCCGCTCCTGCACTGATCGCGCCAAAGGTGGTCGTGGAG
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Synonyms
Publications