EWM28972.1, cds1698 (CDS) Nannochloropsis gaditana

Overview
NameEWM28972.1
Unique Namecds1698
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1290297..1290377 -
Alignment locationCM002457.1:1289454..1289993 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28972.1
ProductTRX domain-containing protein
Orig transcript idgnl|cribi|Naga_100773g1.7442.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1290297..1290377 -
CM002457.1supercontigCM002457.1:1289454..1289993 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|585111461|gb|EWM28972.1| (TRX domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 426.402 bits (1095), Expect = 4.412e-151
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MPRSSIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLDECLEAR 206
            MPRSSIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLDECLEAR
Sbjct:    1 MPRSSIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLDECLEAR 206          
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|553194439|ref|XP_005855955.1| (hypothetical protein NGA_0546800, partial [Nannochloropsis gaditana CCMP526] >gi|422293098|gb|EKU20398.1| hypothetical protein NGA_0546800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 409.838 bits (1052), Expect = 1.085e-144
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MPRSSIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLL 199
            MPRSSIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEW+RLL
Sbjct:    1 MPRSSIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWKRLL 199          
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|551573059|ref|XP_005772336.1| (hypothetical protein EMIHUDRAFT_101939 [Emiliania huxleyi CCMP1516] >gi|485623776|gb|EOD19907.1| hypothetical protein EMIHUDRAFT_101939 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 170.629 bits (431), Expect = 2.519e-49
Identity = 94/200 (47.00%), Postives = 123/200 (61.50%), Query Frame = 0
Query:    7 PPMPP---GAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMER--FSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNK-GTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLD 200
            PP+ P   G     A  A  V VE+FLDL CP SR+ F TL EG +IE   D+A  +L H V QPWHA G+++HEAALAVK++ P  +  Y   +++  ++  F+D +T E +R ++ A L  L    GV R A   +LA++  + GN  G   TQAVKW CK+HR RGVHVTPTV VNGLEA  VSS W  E+W   L+
Sbjct:   66 PPLSPTAIGYVLNSAAAASPVRVEMFLDLICPFSRKMFVTLTEGRVIERAGDRACFVL-HQVPQPWHAQGSYVHEAALAVKEVAPDLYPNYIGAIYECFDKGKFTDRDTWEKSRTQINAELCDLAASVGVDRAATAAKLAMRASADGNNVGNEVTQAVKWICKHHRTRGVHVTPTVHVNGLEAGIVSSGWTPEQWLAFLE 264          
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|551619529|ref|XP_005790348.1| (hypothetical protein EMIHUDRAFT_109518 [Emiliania huxleyi CCMP1516] >gi|485643959|gb|EOD37919.1| hypothetical protein EMIHUDRAFT_109518 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 171.014 bits (432), Expect = 3.376e-49
Identity = 94/200 (47.00%), Postives = 123/200 (61.50%), Query Frame = 0
Query:    7 PPMPP---GAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMER--FSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNK-GTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLD 200
            PP+ P   G     A  A  V VE+FLDL CP SR+ F TL EG +IE   D+A  +L H V QPWHA G+++HEAALAVK++ P  +  Y   +++  ++  F+D +T E +R ++ A L  L    GV R A   +LA++  + GN  G   TQAVKW CK+HR RGVHVTPTV VNGLEA  VSS W  E+W   L+
Sbjct:   83 PPLSPTAIGYVLNSAAAASPVRVEMFLDLICPFSRKMFVTLTEGRVIERAGDRACFVL-HQVPQPWHAQGSYVHEAALAVKEVAPDLYPNYIGAIYECFDKGKFTDRDTWEKSRTQINAELCDLAASVGVDRAATAAKLAMRASADGNNVGNEVTQAVKWICKHHRTRGVHVTPTVHVNGLEAGIVSSGWTPEQWLAFLE 281          
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|676387821|ref|XP_009037189.1| (hypothetical protein AURANDRAFT_6387, partial [Aureococcus anophagefferens] >gi|323452082|gb|EGB07957.1| hypothetical protein AURANDRAFT_6387, partial [Aureococcus anophagefferens])

HSP 1 Score: 151.369 bits (381), Expect = 4.584e-43
Identity = 78/177 (44.07%), Postives = 113/177 (63.84%), Query Frame = 0
Query:   22 PKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLA---LQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEW 195
            P + +E+F+D  CP SR+ F T+Y GG++ A     V+++  NV+Q WH   A+MHEA+LAV+ L  + F+P+A K+F     F D +  +M+R ++  AL+ +  E  V   AL  +LA   ++G  S N G A T  +KWA KYHR RGVHVTPTVF+NG+EA +VSS W  ++W
Sbjct:    1 PALEIEIFVDFCCPYSRKLFDTVY-GGVVGAAPAGQVELILQNVVQCWHPQSAYMHEASLAVRALDEAKFFPFAAKLFSRQVEFFDAHIWDMSRAQIYDALVEIASEF-VDAEALRAKLARTIVEG--SLNTGNAATLDLKWATKYHRVRGVHVTPTVFLNGVEAPDVSSGWDADQW 173          
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|544214465|ref|XP_005537379.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449017941|dbj|BAM81343.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 140.198 bits (352), Expect = 2.375e-37
Identity = 79/187 (42.25%), Postives = 108/187 (57.75%), Query Frame = 0
Query:   22 PKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSA-FYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPA--LEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLDECLEA 205
            P+V+VEVFLD NCP S++ F TL++  +     D  VQ  F  V QPWHA   +MHEAALA + +   A F+  +  +F   E + D    + TR++V   L     +AGV   A  + ERL     +SGN G A    VK+AC+YHR RGVHVTPTV +NG+     SS+W V+EW+  +D  L +
Sbjct:   92 PQVLVEVFLDYNCPYSKKAFLTLWQEVLPHYRADSRVQFAFGLVPQPWHAQTCYMHEAALAARQVSGDAGFWKASAALFAQQEDWVDEKVLDKTRRQVYEELAQCLAKAGVVSSASLITERLLT---ASGNSGNAVGADVKFACRYHRVRGVHVTPTVHINGIPELNASSSWTVQEWKERIDSLLSS 275          
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|922857814|gb|KOO26017.1| (thioredoxin-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 134.806 bits (338), Expect = 1.334e-36
Identity = 71/156 (45.51%), Postives = 92/156 (58.97%), Query Frame = 0
Query:   46 EGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAME--RFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLL 199
            E  + E   DK V  +F+ VIQPWH  G  +HEAALAVK   P  F+ Y   +F A++  RF D  T +++R ++   L+ +    G+ R A+E  LA +   +GN G   TQ +KW  KYHR RGVHVTPTV VNGLEA  VSS W  E+W   L
Sbjct:    7 EAKLNEKAGDK-VCFIFNQVIQPWHPQGTCVHEAALAVKQCAPDKFFAYCTALFTALDNGRFKDDTTWDLSRAQIYEELLVIAAATGIDRAAVEALLA-RSPEAGNSGNQMTQMIKWVVKYHRCRGVHVTPTVHVNGLEAGVVSSGWSTEQWLEFL 160          
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|1183474358|gb|ORY98223.1| (thioredoxin-like protein [Syncephalastrum racemosum])

HSP 1 Score: 129.028 bits (323), Expect = 6.146e-34
Identity = 68/194 (35.05%), Postives = 105/194 (54.12%), Query Frame = 0
Query:   12 GAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGG--IIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLDECL 203
            G AAAP        +E++LD  CP S + +K + E     +E      VQ++F   +QPWHA    +HEAALAV+ +  S FYP+++ +F   + F D   E  TR++++  +  +    GVP   +E  L    G + NKG A +  +K A K  R+ G+HV+PTV  +GL+ + VSS+W + +WQ      L
Sbjct:   13 GVAAAPH------TLEIYLDYVCPFSAKIYKHIRETVWPFVEQKYPNKVQLIFRQQVQPWHASSTLVHEAALAVEQIDASKFYPFSDALFARQKDFFDEAVELKTRRDLVKQVSEIAASVGVPADKVEALLQNGTGEAQNKGNAVSNNLKLAIKLGRQTGIHVSPTVLFDGLQDNAVSSSWELSQWQEYFQSKL 200          
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|545707293|ref|XP_005705961.1| (thioredoxin-like protein [Galdieria sulphuraria] >gi|452822422|gb|EME29441.1| thioredoxin-like protein [Galdieria sulphuraria])

HSP 1 Score: 129.413 bits (324), Expect = 1.484e-33
Identity = 73/205 (35.61%), Postives = 110/205 (53.66%), Query Frame = 0
Query:    7 PPMPP-------GAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLDECLE 204
            PP+P        G+ +AP      + ++VFLD  CP SR  +  L +  II A+ ++ V  +F N IQPWH   A MHEA+LAV  +    F+ Y+  +F+  + F D N  + +R+E+   L  L  +  +P   +   L ++G  +GN G      +K+A KY R+ GVH++PT FVNG+E +   SAW  EEW   L   L+
Sbjct:   45 PPLPERKLGFSFGSFSAP------IELQVFLDYCCPFSRIAYLKLVDS-IIPAFNNQ-VLFVFQNQIQPWHPQSALMHEASLAVGLIAKEKFFDYSRLLFEHQDEFFDQNCYDKSRRELYGDLANLASKIHIPEDKMLNLLHIRG--TGNDGNQVQSLMKFAIKYSRKLGVHISPTYFVNGIEDTAAGSAWNKEEWLERLRPLLQ 239          
BLAST of EWM28972.1 vs. NCBI_GenBank
Match: gi|45185869|ref|NP_983585.1| (ACR183Cp [Eremothecium gossypii ATCC 10895] >gi|44981659|gb|AAS51409.1| ACR183Cp [Ashbya gossypii ATCC 10895] >gi|374106791|gb|AEY95700.1| FACR183Cp [Eremothecium gossypii FDAG1])

HSP 1 Score: 127.102 bits (318), Expect = 3.096e-33
Identity = 68/168 (40.48%), Postives = 99/168 (58.93%), Query Frame = 0
Query:   23 KVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVE-AGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSA 189
            +  VE++LD  CP SRR F   ++     A  D   QI+F++VIQPWH    +MHEAALAV  L P+AF P++ ++F   +R+ D  T + +R  V   L     + AG+P  A+ + LA++    GN G A  + +K   +YHR+ GVHVTP+V VNG+ A  + SA
Sbjct:   20 RDTVELYLDYCCPFSRRLFLAWHDALFPRARADSRFQIVFNHVIQPWHPASQYMHEAALAVARLDPAAFLPFSRELFLHQDRWFDTRTADKSRHAVYRELADFARDAAGLPADAVYDLLAVR----GNDGNAVVRDLKHYVRYHRQNGVHVTPSVAVNGVLAPAIDSA 183          
The following BLAST results are available for this feature:
BLAST of EWM28972.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111461|gb|EWM28972.1|4.412e-151100.00TRX domain-containing protein [Nannochloropsis gad... [more]
gi|553194439|ref|XP_005855955.1|1.085e-14499.50hypothetical protein NGA_0546800, partial [Nannoch... [more]
gi|551573059|ref|XP_005772336.1|2.519e-4947.00hypothetical protein EMIHUDRAFT_101939 [Emiliania ... [more]
gi|551619529|ref|XP_005790348.1|3.376e-4947.00hypothetical protein EMIHUDRAFT_109518 [Emiliania ... [more]
gi|676387821|ref|XP_009037189.1|4.584e-4344.07hypothetical protein AURANDRAFT_6387, partial [Aur... [more]
gi|544214465|ref|XP_005537379.1|2.375e-3742.25hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|922857814|gb|KOO26017.1|1.334e-3645.51thioredoxin-like protein [Chrysochromulina sp. CCM... [more]
gi|1183474358|gb|ORY98223.1|6.146e-3435.05thioredoxin-like protein [Syncephalastrum racemosu... [more]
gi|545707293|ref|XP_005705961.1|1.484e-3335.61thioredoxin-like protein [Galdieria sulphuraria] >... [more]
gi|45185869|ref|NP_983585.1|3.096e-3340.48ACR183Cp [Eremothecium gossypii ATCC 10895] >gi|44... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1702rna1702Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications