rna1701, rna1701 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1701
Unique Name	rna1701
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2859
Alignment location	CM002457.1:1286707..1289191 +

Link to JBrowse

Properties


Property Name	Value
Product	caax alpha
Orig transcript id	gnl\|cribi\|Naga_100556g2.7615.mrna
Orig protein id	gnl\|cribi\|Naga_100556g2.7615
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1286707..1289191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100556g2	gene1637	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1701	rna1701-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28978.1	cds1697	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1286707..1289191+
coding sequence from alignment at CM002457.1:1286707..1289191+

mRNA sequence

>rna1701 ID=rna1701|Name=rna1701|organism=Nannochloropsis gaditana|type=mRNA|length=2859bp
AACTGAAACAAAAACAACACATAAGTATATCTTTAAGAAAGGCGGAAAAT
AAATGGCAAGTTGAAGCCTCGACGCGCGAGACTGCCGCAACCATCCCATC
TTGCCCTGCAAGAAAAGAACCACTTCCCAAGCACAAACTGGACTGACGAG
CAGTTCTTCATCATCATTTCTATCAAGACGTAGTGTTGAATGCTGCGGAA
AGTCGATTTAGTGGTCAAGAGCAAATGTTTAACCAAAGATGCATGGCTTA
GTGCCCCACTGAACACGACCCCCAACATGTCGCACAGGTCCTCTTACCCC
AAATCCTTTGGGTTCGGAAGGCCACGATACCTTTGCACCACCACCTTACG
GAGGGGGTTTGGCAAAGTCTCACTTTTCTACTGGACTTACTATCCATCCC
CTCACAGCCGGCGTAAACCATGGTCTCCCCTGACATCCGTCAACGCAAAC
CGGGCCTTGCGGCATCTGAGGCGGACGACGTGGTCGTGGACGATGGAGAG
AGCGAAGAGGAGGTGGAGTACGAAGACGAGCCAGACGAACAGGAGATGAG
TGCGTTGGATTATTTGCACTCACAGGGATTATCCTTGAAGTCACTGAAAG
ATCCTTCCAAGGCCAAGACGGGAGCCACATGTCGTGCCGAGGGAAGCAGC
AGGGACAAGGACGGCGGACAGAAAGAGGTTGCGGCAAATGTCAAAGCCGC
AATGAAAGCACGAAGGAAAAAGGCTCTGGCGGAAGAGAATGAGAAGCAGG
CTAAAAAAGAAGGGGGAATAAAGTGGATGCCGCTCCTCTTTCTGCTGTTC
ATGATGGGGCCTGCGATCTTCACGGCGTTTGACTACCTGTTCCAGCTTCC
TATGTTTGCTCGCTTTCATCGCAAACCAGACATGCGTCAGTGTTTAACCA
ATTACTACCGCAAGGTGAGCCCCGACCGCTTGAGCGAAGTGAATGTGGAC
GATATTTTGCGAAAATACAAGGGGCGAGAATCCACGATGATCAGGAATTT
GGAAAACCGCTATCGCCGGAAATGGCAGTGTCCTTGAAAAGAAGCGCGGA
GAAGCAGACAAATAGGGGTGGGAAGGGAAGAAAAACAGAGCGGCGAGAAA
TTTGTGTTTTCTCTTTCTTCTCCAACTTCTTCTTTCTTGTTTGTACACAA
ATTCAAATCTGCTGGACGAATGTGTGGGCTTTGGAACATAAGACATGACG
GGCTGCAAGAGAGCGCAGTTTAGGATTTGAGCAATCATTAAATTCGAAAA
GCAGAAAACTCAATCATGGTCCGGCATTTATGCATCGGGATAGATAGCTT
TCTACCTGCGTTTAGCATCGCGTTTGAGATCTGACAGAGAAAACAAGTGC
GATCTTGCTAATGGGAATTTCAGTCATATTTCAAGTATTTGTTGGCAACC
TGCTTTCTTGATCCAGCCACTCCTTTGCCGACCAGCCACTGCGTAAACCT
ATTCTTATCGAAAGGATTTCTCAGAGTAATCGCAGCTTAGTCTTCAGTAC
TTTAGTGTGTCTTTTGTAAGCTGGATCGGCCCATGACAAAAAACTTCAAC
CTCCTCCCACTGCTGTTCCTGACCCGATGCTTATGTGGGTAGGGTGCACC
ATTACCCGTTGTGGTTCTAATGTTCCCGAAACCACAAAAAAAAGATAATA
TAATGGCCTCCGTGGATTTGATCTCCGGCTTGTACGGGGTTCTCCTAGCG
TTTGGAATCATGCTGCTTGCCGTTCTCCTCCTCCCTCTCGTCGTCTACCT
GATCAGCCGAAAGCCTTATCCCACTCTCAAAACATTGAGCAGCACTAAAA
CCCTCGGCGGTGTTCTCGTCACTGGAGCTTCTACAGGTATTGGCCGACAC
GCTGCATTTTATTTGGCTAGACAAGGCTTTTTAGTCTTCGCAGGGGTGCG
GAAACCTGCAGATGGCGAAGCACTCTTGAGAGCTTACCTAGATGAAGAAA
GCAAACAAACAAGTAAAAGCCGCAGCCGGGGCAAGGTATCCCCGGCAAAA
CAAGGCGTCTTACACTTCCTCATTTTAGACATCACCAAACCTTTTCAAAT
CGCCGCTGCCGTGCGGAGTGTTCAGGAGGAATTAAGTCGGAGGGGCGGCC
TCCCTTTCTTGGGCCTCGTGAATAATGCTGGCGTCACAGGCGGGGCCGAT
CCCGTCGAATTTCTTCCGCTAGAGCACAATCGAAATACCTTTGAGGTCAA
TTTTTACGGACCCTTAGCGGTCACTCAAGCTTTTTTGCCCCTGCTTCGCC
AAGCTCCACAAGGCAGGATCGTCAACGTCAGTAGCATGGCTGGCATTGTC
ACTCGACCCCTAGGAGCTACGTATTCCTGCACAAAATTCGCCTTAGAGGC
TTTAAGTGATACACTTAGGGTAGAGCTAGGACATTTGGGGGTGTCTGTAT
CTGTCATTCAGCCTGGGTATATCCGCAGTGAAATCTTCGGGAAAGCGGAC
GAACAGCACCAACATCGCATGCAAGAGCTCCCAGTGGAATGCAGCGCCCT
CTATGGACATTTGTACACGGTCGATAAAACGAATGCGCTTATTGCTAAAG
CTTCCGACCCCATTGTCTGCTCTCGCGCGATTCACCACGCGTTGACAAGT
CCTTACCCAAAGGTAAGTCTTCTTTGGATTCGGAGAGCTTGCGGTAGACG
AAGCTCTTGTTTTAGGATCTATCCACAAGAAAGGTTTTACTGACATGCCA
TATGCTCACGGGCGCGAACAAAAGGCCGGCGGAGAATCGTTATCTTGTCA
TTAATTGCCCACTATTCTGTTTAATTTTGGGTGCAAGTTGACAGGCAGCC
CACTTTGTTGGATTTTAGTCGGGTCCAGTCGATTGGAAAAGGGCACATGT
CACCCCTCG

protein sequence of rna1701

>rna1701-protein ID=rna1701-protein|Name=rna1701|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MPTSPQAMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEY
MRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQD
NAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPA
GELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRR
NNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLE
EGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETGYRASGWRERLVNAV
EEGGGREGGRGRWQGGSVYHSEPC

mRNA from alignment at CM002457.1:1286707..1289191+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1701 ID=rna1701|Name=rna1701|organism=Nannochloropsis gaditana|type=mRNA|length=2485bp|location=Sequence derived from alignment at CM002457.1:1286707..1289191+ (Nannochloropsis gaditana)
CCACTAAATCGACTTTCCGCAGCATTCAACACTACGTCTTGATAGAAATG
ATGATGAAGAACTGCTCGTCAGTCCAGTTTGTGCTTGGGAAGTGGTTCTT
TTCTTGCAGGGCAAGATGGGATGGTTGCGGCAGTCTCGCGCGTCGAGGCT
TCAACTTGCCATTTATTTTCCGCCTTTCTTAAAGATATACTTATGTGTTG
TTTTTGTTTCAGTTAGTGCGGCACAGTCTTTCTAGAGTAGAGTATCGGGT
GGTCAGACGTACATCGTGACCTTTTGCACGCCCTCGCGCGCTTGTTTTAC
AGGTAAGTCTTACAACTGGCAGAATATGCTCCTGGTAGTTAGCCGAATGG
CCTCCAGGCTACAATGTAGAATAAGCATTAGACCGCGATTCAAATGAGAT
CCACCAGCATCAACCAAGCTGTAAGGTGCACATACGTTGCTGATATCATA
CTGAAGGCGCTCCATGGGCGGACTTGACCGTGTGTTTATTTATAGGACTG
CGTCTGGCATTAGAGCAGGCAATCAAAGGGACCATGTTCGCCAACCCAGT
GCGTCTCCATTTCTGTGCTAATAGCCAGACTGAGTGTGAATTTTCATTGA
CCGTAAATCTTGGCTGCGATTTCTGTACTTTTTGCTAAAGTGCCGTTCAT
AATTTTACccgtcaccctcccctcctttctcaggcGCAatgccgacctcc
ccccaagCTATGTACGTGCCGTTTTCTCACCGTCTCGAATGGCAAGATGT
CACGCCTATCCCGCAAGACGAtctccccgcgtcctccctcgtggTCCCTA
TCGACTATCCGGACGAGTACCGCGATGCCACGGAGTACATGCGGGCGGCT
TTGGTCACTGGGGAACGGTCTCGGCGCGTGCACGGTCTAGCAGGGGAGGT
CATAGAAATGAATGCCGCACACTACACGGCCTGGTGGCTGAGACGACGCT
GTTTGGAAGCAATGGTAGCGGAAACAACAGCCCAGGACAATGCGGGGGAT
AAGGAAATGGatgaggccgtggaggagcttTACGATGCGGAGCTGGCCTT
CGCCCTGCGTATTTCGGATGAAAACCCCAAGAACTATCAGGTGTGTGTGC
TTGCTCACGAGGCTCTCTGTAAGATACTGGAATGCCTGTGGCCACAAGCC
TGACCAGGCGTGCAAAATGCTTCAGCtgtcttctcttttccctccgttgt
tccctttttcccttcgcacgtcttctcccttcccccctttcccctttcct
ccttccctcccccgcctcatGGCTTCCTTACAATAACAACCACATTTAAT
TCAGGTGTGGTTTCACCGGCAGACCATTATTGCGGAGACTGAGGACCCGG
CTGGGGAGCTGGAAATTTCGACGCGGGCCTTGAGGAAGGACGCCAAGAAC
TACCATGTATGGGCCTATCGCCAATGGATTCTCAAAACCTTCCAGGcagg
ctgggaggaggaaatggcatTCGTTGACACCTTGCTTAAAGAGGACAGAC
GGTAAGCGTGgccaggggtggggaggctggggTGGGGGTGCACGGGGAGA
ACAGGCGCGAGGGTCAGCCACGAGACACGAACAGGACGATCGCATGAAGG
CCACTGGAACTTTTGGCGGGAAAGACAGATCCAGGGCTCGtcgagaaaga
aggaggaaggaagaagaggggctgacgccggagggaggcgaagggcaagg
acggtCTCAtacttccttttttcctccctccctctgtccctgtCTGCCTT
tcccagcaacaacagcgCCTGGAACCAACGATGGTTCGTCGTGCACACCC
ACGAGCTCTCTCCTTACCatctggagagggagggaggaaggggtggaggg
aaagcggatgcCATTCGGGAGCGGGAGATGGCATACGCATGGGATTCCGt
actggaggagggagccggcctggcggggggcgggggcggggaaggaaagg
aaggtagACTAGGAGATAATGAGAGTGCTTGGATGTATTTACGCGGATAC
CTGAGGGAAACGGGGTACCGAGCATCGGGCTGGCGGGAGCGGCTTGTGAA
cgcggtcgaggagggaggggggagggagggcgggagggggaggtggcaaG
GCGGGTCTGTGTACCACTCCGAGCCTTGTTAATAGACATGTACGAGACGA
TGGGGGACGAGACAAGCctgatggaggccgtggcacTGGCGGAAGGCTTG
GCAGAGAGGTGGGATGTAAGCCGGCGAAAGTATTGGTCACTGGCGGTGGT
CAATCGGATCAATCGTAAATTGGTGAGAGATATCACCACCCcggtggaaa
ggggaggagaagaatgatggtgagggggggtgggaagacCCTGCCTGTAC
GTAGGGGGCAacgaggcggagagggaggggccgtaACAACAACAATGCTT
TACAGACGACGTGTGGATGCCAAACGTACGAAAAAGACGGGAAAACGTGT
GGAAGCGTTTGCAACCAAGCCAACtgattttcttc

Coding sequence (CDS) from alignment at CM002457.1:1286707..1289191+

>rna1701 ID=rna1701|Name=rna1701|organism=Nannochloropsis gaditana|type=CDS|length=2925bp|location=Sequence derived from alignment at CM002457.1:1286707..1289191+ (Nannochloropsis gaditana)
atgccgacctccccccaagCTATGTACGTGCCGTTTTCTCACCGTCTCGA
ATGGCAAGATGTCACGCCTATCCCGCAAGACGAtctccccgcgtcctccc
tcgtggTCCCTATCGACTATCCGGACGAGTACCGCGATGCCACGGAGTAC
ATGCGGGCGGCTTTGGTCACTGGGGAACGGTCTCGGCGCGTGCACGGTCT
AGCAGGGGAGGTCATAGAAATGAATGCCGCACACTACACGGCCTGGTGGC
TGAGACGACGCTGTTTGGAAGCAATGGTAGCGGAAACAACAGCCCAGGAC
AATGCGGGGGATAAGGAAATGGatgaggccgtggaggagcttTACGATGC
GGAGCTGGCCTTCGCCCTGCGTATTTCGGATGAAAACCCCAAGAACTATC
AGGTGTGGTTTCACCGGCAGACCATTATTGCGGAGACTGAGGACCCGGCT
GGGGAGCTGGAAATTTCGACGCGGGCCTTGAGGAAGGACGCCAAGAACTA
CCATGTATGGGCCTATCGCCAATGGATTCTCAAAACCTTCCAGGcaggct
gggaggaggaaatggcatTCGTTGACACCTTGCTTAAAGAGGACAGACGc
aacaacagcgCCTGGAACCAACGATGGTTCGTCGTGCACACCCACGAGCT
CTCTCCTTACCatctggagagggagggaggaaggggtggagggaaagcgg
atgcCATTCGGGAGCGGGAGATGGCATACGCATGGGATTCCGtactggag
gagggagccggcctggcggggggcgggggcggggaaggaaaggaaggtag
ACTAGGAGATAATGAGAGTGCTTGGATGTATTTACGCGGATACCTGAGGG
AAACGGGGTACCGAGCATCGGGCTGGCGGGAGCGGCTTGTGAAcgcggtc
gaggagggaggggggagggagggcgggagggggaggtggcaaGGCGGGTC
TGTGTACCACTCCGAGCCTTGTTAAatgccgacctccccccaagCTATGT
ACGTGCCGTTTTCTCACCGTCTCGAATGGCAAGATGTCACGCCTATCCCG
CAAGACGAtctccccgcgtcctccctcgtggTCCCTATCGACTATCCGGA
CGAGTACCGCGATGCCACGGAGTACATGCGGGCGGCTTTGGTCACTGGGG
AACGGTCTCGGCGCGTGCACGGTCTAGCAGGGGAGGTCATAGAAATGAAT
GCCGCACACTACACGGCCTGGTGGCTGAGACGACGCTGTTTGGAAGCAAT
GGTAGCGGAAACAACAGCCCAGGACAATGCGGGGGATAAGGAAATGGatg
aggccgtggaggagcttTACGATGCGGAGCTGGCCTTCGCCCTGCGTATT
TCGGATGAAAACCCCAAGAACTATCAGGTGTGGTTTCACCGGCAGACCAT
TATTGCGGAGACTGAGGACCCGGCTGGGGAGCTGGAAATTTCGACGCGGG
CCTTGAGGAAGGACGCCAAGAACTACCATGTATGGGCCTATCGCCAATGG
ATTCTCAAAACCTTCCAGGcaggctgggaggaggaaatggcatTCGTTGA
CACCTTGCTTAAAGAGGACAGACGcaacaacagcgCCTGGAACCAACGAT
GGTTCGTCGTGCACACCCACGAGCTCTCTCCTTACCatctggagagggag
ggaggaaggggtggagggaaagcggatgcCATTCGGGAGCGGGAGATGGC
ATACGCATGGGATTCCGtactggaggagggagccggcctggcggggggcg
ggggcggggaaggaaaggaaggtagACTAGGAGATAATGAGAGTGCTTGG
ATGTATTTACGCGGATACCTGAGGGAAACGGGGTACCGAGCATCGGGCTG
GCGGGAGCGGCTTGTGAAcgcggtcgaggagggaggggggagggagggcg
ggagggggaggtggcaaGGCGGGTCTGTGTACCACTCCGAGCCTTGTTAA
atgccgacctccccccaagCTATGTACGTGCCGTTTTCTCACCGTCTCGA
ATGGCAAGATGTCACGCCTATCCCGCAAGACGAtctccccgcgtcctccc
tcgtggTCCCTATCGACTATCCGGACGAGTACCGCGATGCCACGGAGTAC
ATGCGGGCGGCTTTGGTCACTGGGGAACGGTCTCGGCGCGTGCACGGTCT
AGCAGGGGAGGTCATAGAAATGAATGCCGCACACTACACGGCCTGGTGGC
TGAGACGACGCTGTTTGGAAGCAATGGTAGCGGAAACAACAGCCCAGGAC
AATGCGGGGGATAAGGAAATGGatgaggccgtggaggagcttTACGATGC
GGAGCTGGCCTTCGCCCTGCGTATTTCGGATGAAAACCCCAAGAACTATC
AGGTGTGGTTTCACCGGCAGACCATTATTGCGGAGACTGAGGACCCGGCT
GGGGAGCTGGAAATTTCGACGCGGGCCTTGAGGAAGGACGCCAAGAACTA
CCATGTATGGGCCTATCGCCAATGGATTCTCAAAACCTTCCAGGcaggct
gggaggaggaaatggcatTCGTTGACACCTTGCTTAAAGAGGACAGACGc
aacaacagcgCCTGGAACCAACGATGGTTCGTCGTGCACACCCACGAGCT
CTCTCCTTACCatctggagagggagggaggaaggggtggagggaaagcgg
atgcCATTCGGGAGCGGGAGATGGCATACGCATGGGATTCCGtactggag
gagggagccggcctggcggggggcgggggcggggaaggaaaggaaggtag
ACTAGGAGATAATGAGAGTGCTTGGATGTATTTACGCGGATACCTGAGGG
AAACGGGGTACCGAGCATCGGGCTGGCGGGAGCGGCTTGTGAAcgcggtc
gaggagggaggggggagggagggcgggagggggaggtggcaaGGCGGGTC
TGTGTACCACTCCGAGCCTTGTTAA

Synonyms

Publications