EWM28978.1, cds1697 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|585111468|gb|EWM28978.1| (caax alpha [Nannochloropsis gaditana]) HSP 1 Score: 663.3 bits (1710), Expect = 0.000e+0 Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query: 1 MPTSPQAMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETGYRASGWRERLVNAVEEGGGREGGRGRWQGGSVYHSEPC 324
MPTSPQAMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETGYRASGWRERLVNAVEEGGGREGGRGRWQGGSVYHSEPC
Sbjct: 1 MPTSPQAMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETGYRASGWRERLVNAVEEGGGREGGRGRWQGGSVYHSEPC 324
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|553194424|ref|XP_005855951.1| (farnesyl-protein transferase alpha-subunit [Nannochloropsis gaditana CCMP526] >gi|422293094|gb|EKU20394.1| farnesyl-protein transferase alpha-subunit [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 412.149 bits (1058), Expect = 1.225e-143 Identity = 198/200 (99.00%), Postives = 199/200 (99.50%), Query Frame = 0
Query: 1 MPTSPQAMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRR 200
MPTSPQAMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVH LAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQW+LKTFQAGWEEEMAFVDTLLKEDRR
Sbjct: 1 MPTSPQAMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHSLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWLLKTFQAGWEEEMAFVDTLLKEDRR 200
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|1191032626|ref|XP_020893369.1| (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like [Exaiptasia pallida] >gi|999979216|gb|KXJ18390.1| Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Exaiptasia pallida]) HSP 1 Score: 186.808 bits (473), Expect = 2.246e-53 Identity = 113/299 (37.79%), Postives = 160/299 (53.51%), Query Frame = 0
Query: 6 QAMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETGY-RASGWRERLVNAVEEG 303
Q +V + R EW+DVTP+PQDD P VV I Y + ++D +Y RA L +GE S RV L E I +NAA+YT W RR L+A+ +K++ E EL + + +E PKNYQVW+HR+ ++ D + EL+ ++ LR DAKNYH W +RQW++K F WE E+ +VD LL ED RNNSAWNQR+FV+ HL G D + +E+ +A D + ++ +NESAW YL+G L + G + G ++ LV G
Sbjct: 10 QDSFVLYRDREEWKDVTPVPQDDGPNP--VVSIAYSERFKDVYDYFRAILKSGEMSERVLALTEEAIGLNAANYTVWHYRRLLLKAL-----------NKDLAE--------ELNYVSVVIEEQPKNYQVWYHRRMVVDWLNDASQELDFTSSILRPDAKNYHAWQHRQWVIKKFNL-WENELEYVDKLLTEDLRNNSAWNQRYFVLS-------HL--------GFTDEVIHQEVKFAMDLI-----------------EKVPNNESAWNYLKGVLSKHGLAKYPGLKDTLVEMYTRG 254
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|1002590516|ref|XP_015673957.1| (PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Protobothrops mucrosquamatus]) HSP 1 Score: 187.193 bits (474), Expect = 5.647e-53 Identity = 105/278 (37.77%), Postives = 149/278 (53.60%), Query Frame = 0
Query: 9 YVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETG 286
YV + +R EW D+ P+PQDD P VV I Y ++++D +Y RA L ERS R L G+ IE+NAA+YT W RR L+++ E+ + EL + I ++ PKNYQVW HR+ ++ +DP+ ELE L +DAKNYH W +RQW+++ F+ W++E+ +V+ LLKED RNNSAWNQR+FVV G A+ ERE+ Y + + + NESAW YLRG L++ G
Sbjct: 41 YVLYRNRKEWADIEPVPQDDGPHP--VVQIIYSEKFKDVYDYFRAVLQHDERSERAFKLTGDAIELNAANYTVWHFRRVLLQSL-------------------EKDLNKELNYITAIIEDQPKNYQVWHHRRVLVEWLKDPSQELEFIASILNQDAKNYHAWQHRQWVIQEFKL-WDDELEYVEQLLKEDVRNNSAWNQRYFVV-------------SNTSGYNDPAVLEREIQYTLEMI-----------------KLVPHNESAWNYLRGILQDRG 266
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|530564717|ref|XP_005278934.1| (PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Chrysemys picta bellii]) HSP 1 Score: 184.882 bits (468), Expect = 3.824e-52 Identity = 103/278 (37.05%), Postives = 148/278 (53.24%), Query Frame = 0
Query: 9 YVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETG 286
Y+ + HR EW D+ P+PQ+D P VV I Y +++RD +Y RA L ERS R L G+ IE+NAA+YT W RR L ++ K+++E E+ + I ++ PKNYQVW HR+ ++ +DP+ ELE L +DAKNYH W +RQW+++ F+ W+ E+ +VD LLKED RNNS WNQR+FV+ G A+ ERE+ Y + + + NESAW YL+G L++ G
Sbjct: 45 YLLYRHRKEWADIEPVPQNDGPNP--VVQIIYSEKFRDVYDYFRAVLQRDERSERAFQLTGDAIELNAANYTVWHFRRVLLHSL-----------KKDLNE--------EIDYITAIIEDQPKNYQVWHHRRVLVEWLKDPSQELEFIAEILNQDAKNYHAWQHRQWVIQEFKL-WDNELEYVDQLLKEDVRNNSVWNQRYFVI-------------SNTTGYNDPAVLEREVQYTLEMI-----------------KTVPHNESAWNYLKGILQDHG 270
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|1072245844|ref|XP_018432340.1| (PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Nanorana parkeri]) HSP 1 Score: 184.882 bits (468), Expect = 4.204e-52 Identity = 105/278 (37.77%), Postives = 143/278 (51.44%), Query Frame = 0
Query: 9 YVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETG 286
Y+P+ R EW DVTP+PQD+ P VV I Y +++RD +Y RA L ERS R L G+ IE+NAA+YT W RR L+++ + A E+ + I +E PKNYQVW HR+ ++ +DP ELE L +DAKNYH W +RQW+++ F W+ E+ +VD LL D RNNSAWNQR+F++ G I ERE+ YA + + NESAW YLRG L++ G
Sbjct: 49 YIPYRERKEWADVTPVPQDEGPNP--VVQIVYSEKFRDVYDYFRAVLQRDERSDRAFKLTGDAIELNAANYTVWHYRRVLLQSLKKDIRA-------------------EMNYISAIIEEQPKNYQVWHHRRVLVELLKDPTEELEFIADILNQDAKNYHAWQHRQWVIQEFNL-WDGELQYVDLLLARDLRNNSAWNQRYFII-------------SNTSGYSNPQILEREVQYALEMI-----------------KVAPHNESAWNYLRGILQDRG 274
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|927119854|ref|XP_013931479.1| (PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Thamnophis sirtalis]) HSP 1 Score: 184.496 bits (467), Expect = 6.330e-52 Identity = 106/280 (37.86%), Postives = 150/280 (53.57%), Query Frame = 0
Query: 7 AMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETG 286
A YV + +R EW D+ P+PQDD P VV I Y ++++D +Y RA L ERS R L G+ I +NAA+YT W RR L+++ K+++E EL + I ++ PKNYQVW HR+ ++ +DP+ ELE L +DAKNYH W +RQW+++ F+ W++E+ +V+ LLKED RNNSAWNQR+FV+ G A+ ERE+ Y G + NESAW YLRG L++ G
Sbjct: 40 AGYVLYRNRKEWADIDPVPQDDGPHP--VVQIIYSEKFKDVYDYFRAVLQHDERSERAFKLTGDAIGLNAANYTVWHFRRVLLQSL-----------KKDLNE--------ELNYITAIIEDQPKNYQVWHHRRVLVEWLKDPSQELEFIANILNQDAKNYHAWQHRQWVIQEFKL-WDDELEYVEQLLKEDVRNNSAWNQRYFVI-------------SNTSGYNDPAVLEREIQYTL-----------------GMIKLVPHNESAWNYLRGILQDRG 267
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|975126830|ref|XP_015279217.1| (PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Gekko japonicus]) HSP 1 Score: 183.726 bits (465), Expect = 1.077e-51 Identity = 107/291 (36.77%), Postives = 156/291 (53.61%), Query Frame = 0
Query: 9 YVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETGY-RASGWRERLVN 298
Y+ + R EW D+ P+PQDD P VV I Y +++RD +Y RA L ERS R L G+ IE+NAA+YT W RR L+++ ++LY+ EL + I ++ PKNYQVW HR+ ++ +DP+ ELE L +DAKNYH W +RQW+++ F+ W++E+ +V+ LLKED RNNS WNQR+FV+ G AI ERE+ Y + + + NESAW YL+G L++ G + G E+L++
Sbjct: 39 YLLYRDRKEWADIEPVPQDDGPNP--VVQIIYSEKFRDVYDYFRAVLQRDERSERAFTLTGDAIELNAANYTVWHFRRILLQSLK------------------KDLYE-ELNYITAIIEDQPKNYQVWHHRRVLVEWLKDPSRELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WDDELEYVEQLLKEDVRNNSVWNQRYFVI-------------SNTTGYDDPAILEREVQYTLEMI-----------------KMVPHNESAWNYLKGILQDRGLSKFPGLLEQLLD 277
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|635047949|ref|XP_007960551.1| (PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform X1 [Chlorocebus sabaeus] >gi|966958329|ref|XP_015000749.1| PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Macaca mulatta]) HSP 1 Score: 184.111 bits (466), Expect = 1.104e-51 Identity = 106/278 (38.13%), Postives = 146/278 (52.52%), Query Frame = 0
Query: 9 YVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETG 286
YV + R EW D+ P+PQ+D P S VV I Y D++RD +Y RA L ERS R L + IE+NAA+YT W RR L+++ K++ E E+ + I +E PKNYQVW HR+ ++ DP+ ELE L +DAKNYH W +RQW+++ F+ WE E+ +VD LLKED RNNS WNQR+FV+ G A+ ERE+ Y + + + NESAW YL+G L++ G
Sbjct: 63 YVLYRDRAEWADIDPVPQNDGP--SPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-----------QKDLHE--------EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WENELQYVDQLLKEDVRNNSVWNQRYFVI-------------SNTTGYNDRAVLEREVQYTLEMI-----------------KLVPHNESAWNYLKGILQDRG 288
BLAST of EWM28978.1 vs. NCBI_GenBank
Match: gi|620944581|ref|XP_007662977.1| (PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Ornithorhynchus anatinus]) HSP 1 Score: 182.185 bits (461), Expect = 1.198e-51 Identity = 103/273 (37.73%), Postives = 142/273 (52.01%), Query Frame = 0
Query: 9 YVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADAIREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGY 281
YVP+ R EW D+ P+PQ+D P VV I Y +++D +Y RA L ERS R L G+ IE+NAA+YT W RR LE++ K+++E E+ + I +E PKNYQVW HR+ ++ DP+ ELE L +DAKNYH W +RQW+++ F+ W+ E+ +VD LLKED RNNS WNQR FV+ G A+ E+E+ Y + + NESAW YL+GY
Sbjct: 59 YVPYRSRAEWADIEPVPQNDGPNP--VVQIIYSAKFKDVYDYFRAVLKLDERSERAFKLTGDAIELNAANYTVWHFRRVLLESL-----------QKDLNE--------EMNYITTIIEEQPKNYQVWHHRRVLVEWLNDPSQELEFVADILNQDAKNYHAWQHRQWVIQKFKL-WDNELEYVDHLLKEDVRNNSVWNQRHFVI-------------SNTSGYNDPAVLEKEVQYTLEMI-----------------KTAPHNESAWNYLKGY 279 The following BLAST results are available for this feature:
BLAST of EWM28978.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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