|
|
Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase |
| Orig transcript id | gnl|cribi|Naga_100013g49.9759.mrna |
| Orig protein id | gnl|cribi|Naga_100013g49.9759 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:449998..451647 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna170 ID=rna170|Name=rna170|organism=Nannochloropsis gaditana|type=mRNA|length=4270bp
AACCTTATCATCGCATGGGCATAAGATTATTAAGGCATTTTGTCTTCAAC
AGAAGCTTGGCTTGTGGATTAAGGAACATAGTCTAGCAGGAAAAATGCCC
CCGTACAACCTTATCCACATAATCAACATTTCGGCATTTTGCATGCAAGG
AAAGGCCTTGTTGAACGAGGTAATTGGCGGTGGCACGGCCGCAAGGAGAT
CGGCGAGATGTTGTATTTGACGTGACCGGACGGAGGGGTGTGAAACGCAG
AATTATGCTGGGAGAGACTCGCATTTACTACAAAGCGGAATGCACCGGGA
CGCCTTGGATGCATCATCACTCTTGCCTGAAACATTCTTCACGACCAACT
TACACAGGAATGCCTGGGTTCATGTCCTTGGTTTTCTCCCGACGACCATG
AGGCACCGAGACCCGCGAGGGCGGTGGGCTGCCGATGGCGGCGCTCCTAC
CTCCTACTCCCTGGGACCTTCCGCGGCGCCGCTTCCCTCGTCGACACAAG
CCGAGGTCCTATTTGATGGCCGCGATAAGGAGGACGTGGATTGTCACCAT
CACTCGCTGGAGGAACGGGCGCGGCGGACAGTATTTACATGCGCCTGGTG
CGCCCTATGCCTTGCAGGCAGCAATGTCCTGGGCTCCAAAGTTCTGTCAT
TGGGAGGCACGGCTTTGTTTTGGCCAGGCCCACCCATCGTCGCCATGCTC
CTGGTCCTCAGTCCTTTGTTCATGCAGCGCTGGTTGGCGTCCACGGCATT
CGCTGTCTACCTTGTGATGATCCTCCTCGATTTTGGCAAGCTGAACGAGT
GCCTGTTTTTGAACGTGCTGTTCATGGTCACCGATGCCACGGAGGTCTTC
GTTGTCATGACGTGTTTGCGTGCAGTGCTAGGGATCGCTCCCGTCAGTAT
CATTCGGACGGGGGTGGGAATAAATGCCATCCTGCTTTTCCCCCTGGTTC
TGGCCCCCTTGAAAGCGGGCCTGAATGCTTTGCTTATCTATATGTGCTAC
GGCGCACTGAACCTTCCCTTGTCTGAAACCCTCGTGATTTGGCTGATTGG
GGACCTGTTTACCGACTTCTTCGTCGTATACTCGGTGCTGGTGGTGCGCT
ACTACCTCCAGCTCTACCTGATCAAGGTGAAGGAGATGAAAATGTGTGAG
AGGGAGGGCAGAAAGGAGCCGGAAGACGCGGGCCGGGCCGAGACGGCGAA
TGCAATCGGCATGGGAGGCAGCCTCAGGGTGCCGCATGGAGGGCCGGGCG
AAAGCTCAATGGGCGGGGCAGGGCGCACGACCCCGGCTCTGACCAACGGG
GAGAGTATTTATCACTTTACGCAAACACGTTACGAGAACGGGGGGTGGGG
CCAAGAAGAGGGTGACGAGGAGGAATCGGAGAAGGAGTGGGGCAGCGACG
ACAGTGAATACGAGGACGAGGAGGAGGATGAGGAGGAAGACGAGGAAGAC
GAGGAGGAGGAGGAGGAGGAAGACGAGGAAGACGAGGAGGAGGAATGGAA
GTTCGAAAATGGAGGGCGTGAGATCGAGCCCGCGGAATCTAGGAATGAGG
AGGATGCTGGAAGCAGTGATGTTCCCGGGAAGTGGTCTCCATACGCTCCT
GGAAGCGGCGTCTCTCACCATCGCGCGAATGGAGTACGTCCGGATATGGT
GGCGAAGACCGACGCGTTGGGTCCAGGGATACCAAGCAATGCTGCCGCGG
TGCAGCAGGCCGGCCATCCAGTCAAAGCCTGGCTGCACTCACCGAGGATG
CTCTGGGACGTGACAGCCTTCGTCTTCTTCCTCTCGGTCAGCATCTTGAC
CTCCTTCGCTACCATCCTCAACCACACGCGCATCGCCCGCCAGCCCCTCT
TCTACCTGGGCAGTCGGCTTCTTTTTCCGGTCACGGGGTACGTGACGGTG
CGGTACGGACAGCTTGTCTCCTGCTTCATCGTGGGTGTGGTTGCCATCAG
CATGCTGGTCACCGATTTCCTCCTCAACGAGGAGCAGAAGACGTATGGCT
CCGTGTATATCACCTCCTTCAGCACCCTCTTCCAGGCCTTAGTCTGCCCG
ACGCTCATCGTCATCGTCTCCTGGTCCATTTCCTACCTGGCTGTGGCCCT
GGCAGAGCGGCAAGACACCCTCCGCCTCCTTCGGGATAAAAACGCCCAGC
TGCTCGCGCAAGAAAAAGAATTAAGAGAGGCGAAACTGGCAGCCGAGCAA
GCCCTGTCCTCCAAGACCGAGTTCTTCGCCCGCGTCTCCCACGAGTTCCG
CACGCCCCTGAACGTGGTCCTGGGGTTCTCAGAGGAACTCATCAAGCCGC
CCCCCCCTGGGGACGGAGGGCAGTGGGTGGCACTGACTGCTGAGACAGCG
GACCGCGTGCAGTACATCTTGGCGGCGGGAGAGAGTCTGTTGCGGGTCGT
GGACGACATCCTGGAGCTCTTCCGCCTCTCCTCCACCCACTCCCAAAAGG
GGGGCCAGCTTCTCCGGGTGAATATGACGGCGGTCGACATCCCCTCCTTC
TTTGGCACCGTCTGCGACCTGGTCGAGGTCATCTCCAAGGAGAACGGGCT
GCATTTCATCAAGCACCTGGACCCCGCCCTCCCCCGGTACCTGATCATTG
ACCGGGGCCGATTCTCCCAGCTTGTCATGAACCTGGCCTTCAACGCCTGC
AAGTACAGTCGGCCCGCGGGCGGGGTGGTGTCCATCCGCCTCACCAACGA
AGGTCCCGTGGAGGACGGGCGCCCGGGCTTCATCACCTTGCGCCTCGACG
TGCAGGACAATGGGCCGGGGATACCGCCGGAGGTCAAAGACCGAATTTTC
GAGTCCTTCTTCCGAGGAGGGCCCTCAATGGAGACCATGGAGGTCGAGGA
AGAGGAAGTGGCCATGCCCGCTGCGGCGGGAGGGCCCGACTGCTACTCCT
TGCCGGCCACCGGGGGTGGGGGGGGAATGCGAGGAGGCGAGATGACTGGG
TATTTTGAAGATGCAAGTCAGCTACCACCGGGGGGTCAGCGCCACAGGGG
AGTCGGAGCTGCCTCGCCCTATCTCTCTCCGGGCTTGCCGACGACCAACT
CGGTGTCTGGGGTCCACACAGGCTTCAATGCGGGGCTGGCTCCTGGTGCA
GGTGTTCGCAGTCAACAGTACCTGGCTGGCGCATCGCCTCCCCCTCTCCA
CGTAAGCAGCGCCGAGACTAAAGCGGGGTCCCACCCCTTTCCGCCGGTCC
TCCCCCCCCCCCACCGGAACTACAAGGCGAAGGGGCACGGGCTGGGGCTG
GCGATCACCAAGCAGCTTGTGGATTTACTGCATGGGAAGATCACTGTCCG
ATCGTCGCTGGGTCTGGGTAGTTTGTTTTCGATCTTGTTGCCCGCGGAAG
TAGCAGAAGGAAGCAGTTACGAGGAGTCCCTTGCGGGGCCAGGGGGAGGG
GGAGGGGGAGGGAGAGCGGACGACCCTCCGCCGGTGCGAGACCTGAAGAT
CCTTTCCGTGGAAGATATCCTGGTCAACCAAATCGTGCTGGGGGGCATGC
TCCAGCAGGATGGACATCGTGTCGTATTTGTGGAGACGGGCACGGCAGCC
TTGTCCTCGATCGACCCCTCGTTCGACCTGATCCTCTTGGATTTGCAACT
GCCAGATATGCACGGTATCGACGTTCTAAAGACCCTGAGGAAGCATGCCG
ACCCCCTCCTAGCTGCCATGCCCATCGTCGTGGTCTCCGCCTTGGTTTTG
GACCGAGAAAAGCAGGAGTGCGCCCAGGCTGGGGCCGACGGGTTCATCAC
CAAGCCCGTCAAGCTCGGCCTCCTCCGGCAAGAGATCAGGTCCTTGTGGG
ACTCGGGGAGGTTGCGGAGGCGTGAGGAGAGGGAGGAAACAGGGGCAGAG
GAGCATGCTGCTGAGGAGAGGCCAGCGGGGGAGAGGTCAGGGAAGGAAGG
AGGTAACTCAGGCATCGAAGATTAAGCGTGACATCGAGGAATGGGTTGAG
AGGCAAGGGCTGGGTGATGAGAGGAGAGGACGAATGGATGGATCGGGTCC
GGGCGTGGGAGGCAATAGGGAGGTGTAAAGACGGGGAGGCAGGTTCCGGG
TGTCTTGATGGAGGGGAGTATCGTCCAAGACAGTTCCCTCCCATCCCCTC
CACGAAGGACGGGGTCACCTGGTTGGGAGGTGATGCCTCAATGATACTGT
AGCCTCTGAAAATGAACTTTGTGAAATTCAAATGTCGAAAAATACATGAC
GAAGCACCGTGAAATTTCGAAATTCAATGCCTGTATATTTTACCGAAAAG
AAAAAAGGGCAATTTTAGTA back to topprotein sequence of rna170 >rna170-protein ID=rna170-protein|Name=rna170|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MLKSKIAGPGSWQALGAGLLAISLVAGPSRQIQLYVPPVTALLCGYAALP
HGGLGQRIVLGTMGALSAGAFGFHHLRRRHPICPALSQGEEELALITGAS
SGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHI
VPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIE
EIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSAS
KAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPG
LAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLVTSL
AWSEVPI back to topmRNA from alignment at CM002455.1:449998..451647- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna170 ID=rna170|Name=rna170|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp|location=Sequence derived from alignment at CM002455.1:449998..451647- (Nannochloropsis gaditana)
TCCTGTCCGTTTTCCAGATTGAAATTATCATGTGCGTACATCACAGATCA
GGACTAAATTGCGAAGATCTTACAAAGCCGAAAAATGCTTAAAAGTAAGA
TAGCGGGGCCCGGAAGCTGGCAAGGTAAGCTGTGTGAAGCTTGCCATGAC
AAATATGTAAGGCGTATGTTCCTTAACTATTCTCTTCTGGCCGAGGATGT
TGACACACACTTCTGAATACATTTTCTTTTTCTTCTGACCAATCTGATAG
CTTTGGGAGCTGGTTTACTTGCCATATCGCTGGTCGCCGGGCCGTCACGT
CAAATTCAGCTTTACGTGCCTCCAGTGACAGCGTTGCTTTGCGGGTACGC
CGCCTTACCTCACGGGGGGTTGGGACAACGGATAGTCTTAGGGACTATGG
GGGCTTTGAGTGCCGGGGCCTTTGGCTTCCACCATCTACGACGACGTCAT
CCGATATGTCCTGCACTGTCTCAGGGGGAAGAAGAGCTGGCACTGATTAC
TGGCGCCAGCAGCGGGATAGGGCGGGAGATAAGCTTGGAGCTAGCGAGAA
GAGGCTTCGGTGTCATTCTTGTCGCCCGTCGGGCAGATAAACTGCAGGAG
TTGGCGTCAGATATTCGAGCACTGCTGGCTGACCGGAAAAGAATGGTCCC
CATTCACATCGTGCCGGCGGATCTAAGTTGTCCCGAGGCAGCCCGGCGTG
TGTACGAGAGCGTAGTGCGCGAAAAGGGCTTGCAGGTGAGCGCCTTGGTC
AACAACGCCGGGGTGGGGTACACCGACTCCTTTCTAAAGATGCCTACGGC
GAAGATCGAGGAAATCGTCCATTTGAATGCATTATCTCTGACCCAGCTTT
GTTGGTTGTTCGGTCAAGAGATGGCCTCCCGAGGCCGTGGGCGCATCATG
TGCGTCTCCTCCATTGCCGGCGCCGCGCCCGGGCCCCTGGTGGCCGTCTA
TAGCGCCAGCAAAGCCTTCGTGTCCTCCTTCACCCTGGCCATTCAACACG
AACTCGAGCCTGGAGGCGTCTCGGTGACGAACCTGCTGCCCGGTGCGACC
TTCACCGAGTTCCAGGCGCGCGCCCACGCCCAGGCCGCGGCCGCTTTCTC
CGTCCCGGGGCTGGCTATGCCTGCCGATCGGGTGGCGCGTGAGGGCGTGA
CGGGGATGCTGCGAGGGGACAGCGTCGTAGTCCCGGGCCTGGTGAACCAG
GCCTTCGTGTTGGCCACGGCTGTTTTGCCGCCGAAGCTCCTGCGTTTGGT
GACGTCGCTGGCTTGGAGTGAGGTCCCTATATGACTGGGCACGACTGGCG
ATATTGCGAGGTGTGCAGTGAGACGAAGCATTGGTACCTGCTCTCAAGCC
TGCGAAACGTCTGGTGGACTCTCCCATTGCATAGGACGGGTCAAGTCCTG
ATGTGGTCAATAGAAATCAGCGTTCTGGATGGATCGCCTTCATGTTTGTC
TCTTGTCGTACTTCCGGAAACTGCACCGTTGCTTTCAGTCGGTGAAATGT
TGTAATACAATCTCATATGCAGGTTCCATCAGGCAAATTTGAAAAGAGTT
TTGCGAATCGTAGGCGACCTATATTTGGGTCGCTGCATCGCCTGAGCGTT
TGTATTGACGAAAGCCTTAACCAGTGCAATTTAAGATATCGGCATCGCTA
back to topCoding sequence (CDS) from alignment at CM002455.1:449998..451647- >rna170 ID=rna170|Name=rna170|organism=Nannochloropsis gaditana|type=CDS|length=2148bp|location=Sequence derived from alignment at CM002455.1:449998..451647- (Nannochloropsis gaditana)
CTTTGGGAGCTGGTTTACTTGCCATATCGCTGGTCGCCGGGCCGTCACGT
CAAATTCAGCTTTACGTGCCTCCAGTGACAGCGTTGCTTTGCGGGTACGC
CGCCTTACCTCACGGGGGGTTGGGACAACGGATAGTCTTAGGGACTATGG
GGGCTTTGAGTGCCGGGGCCTTTGGCTTCCACCATCTACGACGACGTCAT
CCGATATGTCCTGCACTGTCTCAGGGGGAAGAAGAGCTGGCACTGATTAC
TGGCGCCAGCAGCGGGATAGGGCGGGAGATAAGCTTGGAGCTAGCGAGAA
GAGGCTTCGGTGTCATTCTTGTCGCCCGTCGGGCAGATAAACTGCAGGAG
TTGGCGTCAGATATTCGAGCACTGCTGGCTGACCGGAAAAGAATGGTCCC
CATTCACATCGTGCCGGCGGATCTAAGTTGTCCCGAGGCAGCCCGGCGTG
TGTACGAGAGCGTAGTGCGCGAAAAGGGCTTGCAGGTGAGCGCCTTGGTC
AACAACGCCGGGGTGGGGTACACCGACTCCTTTCTAAAGATGCCTACGGC
GAAGATCGAGGAAATCGTCCATTTGAATGCATTATCTCTGACCCAGCTTT
GTTGGTTGTTCGGTCAAGAGATGGCCTCCCGAGGCCGTGGGCGCATCATG
TGCGTCTCCTCCATTGCCGGCGCCGCGCCCGGGCCCCTGGTGGCCGTCTA
TAGCGCCAGCAAAGCCTTCGTGTCCTCCTTCACCCTGGCCATTCAACACG
AACTCGAGCCTGGAGGCGTCTCGGTGACGAACCTGCTGCCCGGTGCGACC
TTCACCGAGTTCCAGGCGCGCGCCCACGCCCAGGCCGCGGCCGCTTTCTC
CGTCCCGGGGCTGGCTATGCCTGCCGATCGGGTGGCGCGTGAGGGCGTGA
CGGGGATGCTGCGAGGGGACAGCGTCGTAGTCCCGGGCCTGGTGAACCAG
GCCTTCGTGTTGGCCACGGCTGTTTTGCCGCCGAAGCTCCTGCGTTTGGT
GACGTCGCTGGCTTGGAGTGAGGTCCCTATATGAATGCTTAAAAGTAAGA
TAGCGGGGCCCGGAAGCTGGCAAGCTTTGGGAGCTGGTTTACTTGCCATA
TCGCTGGTCGCCGGGCCGTCACGTCAAATTCAGCTTTACGTGCCTCCAGT
GACAGCGTTGCTTTGCGGGTACGCCGCCTTACCTCACGGGGGGTTGGGAC
AACGGATAGTCTTAGGGACTATGGGGGCTTTGAGTGCCGGGGCCTTTGGC
TTCCACCATCTACGACGACGTCATCCGATATGTCCTGCACTGTCTCAGGG
GGAAGAAGAGCTGGCACTGATTACTGGCGCCAGCAGCGGGATAGGGCGGG
AGATAAGCTTGGAGCTAGCGAGAAGAGGCTTCGGTGTCATTCTTGTCGCC
CGTCGGGCAGATAAACTGCAGGAGTTGGCGTCAGATATTCGAGCACTGCT
GGCTGACCGGAAAAGAATGGTCCCCATTCACATCGTGCCGGCGGATCTAA
GTTGTCCCGAGGCAGCCCGGCGTGTGTACGAGAGCGTAGTGCGCGAAAAG
GGCTTGCAGGTGAGCGCCTTGGTCAACAACGCCGGGGTGGGGTACACCGA
CTCCTTTCTAAAGATGCCTACGGCGAAGATCGAGGAAATCGTCCATTTGA
ATGCATTATCTCTGACCCAGCTTTGTTGGTTGTTCGGTCAAGAGATGGCC
TCCCGAGGCCGTGGGCGCATCATGTGCGTCTCCTCCATTGCCGGCGCCGC
GCCCGGGCCCCTGGTGGCCGTCTATAGCGCCAGCAAAGCCTTCGTGTCCT
CCTTCACCCTGGCCATTCAACACGAACTCGAGCCTGGAGGCGTCTCGGTG
ACGAACCTGCTGCCCGGTGCGACCTTCACCGAGTTCCAGGCGCGCGCCCA
CGCCCAGGCCGCGGCCGCTTTCTCCGTCCCGGGGCTGGCTATGCCTGCCG
ATCGGGTGGCGCGTGAGGGCGTGACGGGGATGCTGCGAGGGGACAGCGTC
GTAGTCCCGGGCCTGGTGAACCAGGCCTTCGTGTTGGCCACGGCTGTTTT
GCCGCCGAAGCTCCTGCGTTTGGTGACGTCGCTGGCTTGGAGTGAGGTCC
CTATATGAATGCTTAAAAGTAAGATAGCGGGGCCCGGAAGCTGGCAAG back to top
|