EWM30471.1, cds170 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|585113135|gb|EWM30471.1| (short-chain dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0 Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0
Query: 1 MLKSKIAGPGSWQALGAGLLAISLVAGPSRQIQLYVPPVTALLCGYAALPHGGLGQRIVLGTMGALSAGAFGFHHLRRRHPICPALSQGEEELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLVTSLAWSEVPI 357
MLKSKIAGPGSWQALGAGLLAISLVAGPSRQIQLYVPPVTALLCGYAALPHGGLGQRIVLGTMGALSAGAFGFHHLRRRHPICPALSQGEEELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLVTSLAWSEVPI
Sbjct: 1 MLKSKIAGPGSWQALGAGLLAISLVAGPSRQIQLYVPPVTALLCGYAALPHGGLGQRIVLGTMGALSAGAFGFHHLRRRHPICPALSQGEEELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLVTSLAWSEVPI 357
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|1173600718|ref|WP_081312552.1| (short-chain dehydrogenase [Clostridium pasteurianum]) HSP 1 Score: 186.808 bits (473), Expect = 1.305e-53 Identity = 101/257 (39.30%), Postives = 154/257 (59.92%), Query Frame = 0
Query: 91 EELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLV 347
+ + LITGAS+GIGRE++ A+ GF +++ AR KL EL+ +I+ +K V + ++P DLS +A+ +++ + REK +++ LVNNAG+G F + K E++ LN SLT L +F ++M G G+I+ V+S PGP +AVY A+KA+V SFT AI +EL+ + V+ L PGAT TEF R A + G AM A+ VAR G T ++G V++PG N+ +L + LP ++L V
Sbjct: 6 KHMVLITGASTGIGREMAKIFAQNGFSIVIAARNRSKLIELSDEIK-----KKYTVEVLVMPKDLSIKNSAKELFDEI-REKNIEIDTLVNNAGMGDCGFFHESSVDKDTEMIELNITSLTILTRIFSEDMVRHGSGKILNVASTGAYMPGPFIAVYYATKAYVLSFTEAIANELKEFNIQVSALCPGATITEFAKR-----AGKLELKG-AMSAESVARIGFTEFMKGKQVIIPGFFNKVGLLFSKFLPRRILAYV 250
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|763323017|ref|WP_044181466.1| (NAD(P)-dependent oxidoreductase [Hyalangium minutum] >gi|670625909|gb|KFE72307.1| 3-oxoacyl-[acyl-carrier protein] reductase [Hyalangium minutum]) HSP 1 Score: 184.882 bits (468), Expect = 6.207e-53 Identity = 106/258 (41.09%), Postives = 157/258 (60.85%), Query Frame = 0
Query: 92 ELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLVTS 349
++ALITGAS+G+G + + AR G VILVAR A KL+ LAS + +++ V H++ ADL+ PE +R+++ V R + L+V LVNNAG G + FL+ A+ EE+V +N +L +L WLF + M RG GRI+ ++S AG GP +A Y A+KAFV SF+ A+ +EL+ GV+VT PGAT TEF RA + + F PG+A D VA + T M++G + + G +N P ++R +T+
Sbjct: 4 KVALITGASAGLGEQFAQLFARDGHDVILVARTASKLEALASKL-----EQEHKVKAHVLAADLTRPEEPQRIFDEV-RSRQLEVEFLVNNAGFGSSGPFLEQNLAREEEMVEVNCTALLKLTWLFAKPMKERGSGRILNIASTAGFQSGPYMATYFATKAFVISFSEALAYELKGSGVTVTCHCPGATHTEFALRAGTEKSRLFQRPGVAQAPD-VAADAYTSMMKGRVLAIHGALNWITSFGGRFAPRAMVRSITA 254
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|488688307|ref|WP_002612515.1| (NAD(P)-dependent oxidoreductase [Stigmatella aurantiaca] >gi|115369005|gb|EAU67950.1| short-chain dehydrogenase [Stigmatella aurantiaca DW4/3-1] >gi|309398329|gb|ADO75788.1| Short-chain dehydrogenase [Stigmatella aurantiaca DW4/3-1]) HSP 1 Score: 184.496 bits (467), Expect = 7.311e-53 Identity = 106/256 (41.41%), Postives = 154/256 (60.16%), Query Frame = 0
Query: 92 ELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLV 347
++AL+TGAS+G+G + + A+ G +ILVAR +L+ LA+ + ++ + H++ ADLS PEA R++E V R +GL V LVNNAG G FL+ P + E+V +N SL +L LF + M RG GRI+ ++S AG PGP +A Y A+KAFV SF+ A+ HEL+ GV+VT PGAT TEF ARA + + F PG+A D VA +G M++G + + GL+N + P L+R +
Sbjct: 4 KVALVTGASAGLGEQFAQRFAQDGHDLILVARTTSRLETLAARL-----EQAHGIKAHVLTADLSRPEAPERLFEDV-RARGLTVEYLVNNAGFGSAGPFLEQPLEREAEMVEVNCTSLLKLTHLFARTMRERGSGRILNIASTAGFQPGPYMATYYATKAFVLSFSEALAHELKGTGVTVTCYCPGATHTEFAARAQVEKSRLFQRPGVATAPD-VAADGYAAMMKGRVLSIHGLLNWIGTMGVRFGPRALVRSI 252
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|1149900733|ref|WP_077835224.1| (MULTISPECIES: short-chain dehydrogenase [Clostridium] >gi|1149413014|gb|OOL93121.1| NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Clostridium roseum] >gi|1149414917|gb|OOL94926.1| NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Clostridium roseum] >gi|1149435284|gb|OOM14914.1| NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Clostridium aurantibutyricum]) HSP 1 Score: 183.341 bits (464), Expect = 2.396e-52 Identity = 100/250 (40.00%), Postives = 146/250 (58.40%), Query Frame = 0
Query: 95 LITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLL 344
LITGAS+GIGRE++ A+ G+ V++ AR KL EL+ DI + + + ++ DLSC + + ++ ++EKG+ V L+NNAGVG T F + KI ++ LN +LT L LF EMA R GRI+ V+S PGP +AVY A+KA+V SF+ AI+ EL V V+ L PGAT TEF AH + G AM A++VA ++G +V+VPG N+ + + ++P KL+
Sbjct: 4 LITGASTGIGRELTKIFAKNGYDVVITARSKKKLDELSKDIEKFSSSK-----VTVIEKDLSCINSGKELF-CKIKEKGIVVDILINNAGVGDTGFFFESNIDKIINMLELNIKNLTILTRLFSSEMAHRKNGRILNVASTGSYMPGPFIAVYYATKAYVLSFSEAIREELRDFNVKVSVLCPGATITEFSKGAH-----KLDLKG-AMTAEKVAYIAYNKFMKGKAVIVPGYFNRVGIFFSKIMPRKLV 241
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|1173949510|gb|OQR97536.1| (hypothetical protein ACHHYP_10750 [Achlya hypogyna]) HSP 1 Score: 182.956 bits (463), Expect = 2.586e-51 Identity = 115/303 (37.95%), Postives = 166/303 (54.79%), Query Frame = 0
Query: 53 GLGQRIVLGTMGALSAGAFGFH-HLRRRHPICPALSQGEEELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVL-ATAVLPPKLLRLVTSLAWS 353
G+ V G G FH RR P+ P +A++TGASSGIGREI+ LA +GF V+LVAR L+ +A ++R +L V +H+ PADLS P + + E V +EK L+V LVN AG+G+ +F ++E+VH+N +L QL +F M +R GRI+ ++SIAGA+P P AVY A+KA V+ F+ +I +E+ V VTN+ PG T FQ + A F +PG++ A VA GV ML G ++ ATA++P +L+ L L W+
Sbjct: 36 GIAALAVYGAFGLCVLDVLLFHWQARRLVPLVPR----PHGVAVVTGASSGIGREIAYLLAEKGFSVVLVARTQATLERMAKEMREVLG-----VAVHVCPADLSAPTSVGAIEEFVAKEK-LEVDILVNCAGIGHHGAFHTQTRNAVDEMVHINVTALVQLTHVFLPGMVARNCGRILNIASIAGASPMPTSAVYGATKAMVTRFSQSINYEMRHKNVGVTNINPGPIPTAFQEKCGMPQAMLFHIPGISNDAKAVAIAGVDAMLAGVETTFDAFSSEVLYYGATALVPKRLIALCGQLLWN 328
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|1086271564|emb|SDO01532.1| (hypothetical protein SAMN05192585_14710 [Acetanaerobacterium elongatum]) HSP 1 Score: 180.259 bits (456), Expect = 4.283e-51 Identity = 108/252 (42.86%), Postives = 155/252 (61.51%), Query Frame = 0
Query: 89 GEEELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLP 340
E + LITGASSGIG+E++ A++G+ V++V+ A KL+ A IRA K + VP DLS P AA +Y + R++GLQV LVNNAG+G +F+ + E++ +N SLT+L LF +MA G+GRI+ V+S PGP +AVY A+KA+V S T A++ EL+ GV+V+ L PGAT TEF RA + G AM A +VA+ G++RG +V++PG N+A V+ + VLP
Sbjct: 2 NEAKTVLITGASSGIGKELAGCFAQQGYRVVMVSANAPKLEHAAEAIRA-----KTRAEVLAVPVDLSQPRAAEELYRDI-RQRGLQVDVLVNNAGIGQCGAFVLEEAWR--EMIAINITSLTELMRLFAHDMAQAGQGRILNVASTGAYQPGPYIAVYYATKAYVLSLTQAVRRELKGSGVTVSALCPGATATEFSRRAGKS-----DIKG-AMSAQKVAQAAFKGLMRGRAVIIPGGWNKAAVVMSKVLP 239
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|654516339|ref|WP_027985165.1| (SDR family oxidoreductase [delta proteobacterium PSCGC 5451]) HSP 1 Score: 180.259 bits (456), Expect = 5.018e-51 Identity = 95/254 (37.40%), Postives = 152/254 (59.84%), Query Frame = 0
Query: 95 LITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLVT 348
LITGAS+GIG E++ ++ G+ ++LV+R + KL+ LA ++ +++ + ++P DLS A + +Y+ +V + G+ + LVNNAG+G F + K E++ LN +SLT LC LFG +M R G I+ V+S A GPL++ Y ASKA+V + + +E GV+V+ L PG T TEF ARA +A +VP + M A +VA +G++RG +++PGL+N+ +T P +L L+T
Sbjct: 6 LITGASTGIGYELTKVFSKNGYNLVLVSRNSQKLEILAKEM-----EKQHDIKAKVIPKDLSKSSAPQELYDDIVAD-GIDIDVLVNNAGIGINGKFTDLSADKHMELIQLNIISLTMLCKLFGTDMVKRRSGSILNVASTAAFQAGPLMSTYYASKAYVLLLSEGLNNEFAQDGVNVSVLCPGPTDTEFAARADMSSAKIINVPWI-MSAAKVAEICFSGLMRGKKIIIPGLMNKLIAFSTRFTPRSVLVLIT 252
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|1132234695|ref|WP_075902859.1| (short-chain dehydrogenase [Moorea bouillonii] >gi|1130579367|gb|OLT61603.1| short-chain dehydrogenase [Moorea bouillonii PNG]) HSP 1 Score: 179.489 bits (454), Expect = 1.093e-50 Identity = 106/254 (41.73%), Postives = 154/254 (60.63%), Query Frame = 0
Query: 94 ALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLV 347
ALITGASSGIG E + AR G+ ++LVAR KL +LA D R K + ++P DLS P AA+ +++ + +E+G +V ALVNNAG +F + A ++ LN ++LT L LF M + G+I+ ++S A PGPL+AVY A+KA+V SF+ AI +EL+ GV+VT L PG T + FQARA+ + + S + M A+ VAR G G+++ +V+VPGL NQ L+ +P L+ V
Sbjct: 14 ALITGASSGIGYEFTKLFARDGYKLVLVARSESKLSQLAEDFR-----EKFGTFVRVIPKDLSVPGAAQEIFDQL-QEEGTKVDALVNNAGFATYGAFAETDLATELAMMQLNIVALTHLTKLFLPAMVQQQYGKILNIASTAAFQPGPLMAVYYATKAYVLSFSEAIANELKGSGVTVTTLCPGPTESGFQARANMEDSKLVSGQKI-MNAETVARIGYLGLMKNRTVIVPGLKNQLLALSIRFMPRNLVTQV 260
BLAST of EWM30471.1 vs. NCBI_GenBank
Match: gi|1084330865|ref|WP_070394924.1| (NAD(P)-dependent oxidoreductase [Moorea producens] >gi|1082412912|gb|AOX02517.1| short-chain dehydrogenase [Moorea producens PAL-8-15-08-1]) HSP 1 Score: 179.104 bits (453), Expect = 1.523e-50 Identity = 106/254 (41.73%), Postives = 154/254 (60.63%), Query Frame = 0
Query: 94 ALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADRKRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLV 347
ALITGASSGIG E + AR G+ ++LVAR KL +LA D R K + ++P DLS P AA+ +++ + E G++V ALVNNAG +F + A +++ LN ++LT L LF M + G+I+ ++S A PGPL+AVY A+K++V SF+ AI +EL+ GV+VT L PG T + FQARA+ + + S + M A+ VAR G G+++ +VVVPGL NQ L+ +P L+ V
Sbjct: 14 ALITGASSGIGYEFTKLFARDGYKLVLVARSESKLSQLAEDFR-----EKFGTFVRVIPKDLSVPGAAQEIFDQLQAE-GIKVDALVNNAGFATYGAFAETDLATELDMMQLNIVALTHLTKLFLPAMVQQQYGKILNIASTAAFQPGPLMAVYYATKSYVLSFSEAIANELKGSGVTVTTLCPGPTESGFQARANMEDSKMVSGQKI-MNAETVARIGYLGLMKNRTVVVPGLKNQLLALSIRFMPRNLVTQV 260 The following BLAST results are available for this feature:
BLAST of EWM30471.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|