rna17, rna17 (mRNA) Nannochloropsis gaditana

Overview
Namerna17
Unique Namerna17
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2162
Alignment locationCM002455.1:55720..55983 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101628g1.2402.mrna
Orig protein idgnl|cribi|Naga_101628g1.2402
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:55720..55983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101628g1gene16Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna17rna17-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30655.1cds17Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna17 ID=rna17|Name=rna17|organism=Nannochloropsis gaditana|type=mRNA|length=2162bp
ATGACTTTGTCTCCCACGCAGGAAAGGCCTCCATCTAAGTTGTCAGATCT
GCTTAAGGATGCAGTCTTCGACGTGGAGAAAGCAGTTAAAACTGCCAGTT
TTGCCTTCTCAGTTTATGGAGCTCCAAAAATCAATACTTGGTACAATGTG
CAAGGTGGAACACGTCTGGGACTACCACAGGAGACTGTTCGTCGGAATTT
CGCGGCCCGATTGCGGGTGACAGTGCTCCGTGCCAAGGATCTGCCGAAAG
AGTCAAAGTTGGCTGATTACATTCTCTCAGGATCCATGCCGGATGCTTAC
GCATTACTGGAGGTAAAAAGCAAATGGGGATATGACCAAGGAAGAACGAT
CACGATCCCGGACAGTAATGCACCTGAGTGGACTGACCCTGCCACAGCCA
CTTCAGAGCTCCTGGTTGAAGACCTGTCAACGGCTACCCTGGAGGTCTCC
CTCCGCGACGAGAATCGATTGGGAAAGGACTCTGTACTTGGGCAGGCGTC
TATCCCACCCCCTGAGATTCCCGCTATGCATAGTAGCTGGACTGGATGGT
TGCCTTTGAAGCAGGCAGAAAATAAGTTAGGGAAGGGGAAGGTCGAACTG
AGGGTAGAGACCCTACCGGCGGTGCGGGCGGGGGAGGGTATTGAACTGAG
TGAAAGCAGCGCAAATCTTGGAACGTCGATCCCTTGGACAAATGACAATG
GGCTGGACAGCGACGAGGAGGATGCAGAGGCTCCCAGGTCCACAGAGGCT
GATCTTGACTGGAATGCAATGGCCGCAAAGCTTACGAACGCCTCGCTTTC
ATTGCGGAAGTACCGTATGGCGGTCTTCTTCACGAACGAATCGACTGACA
CGCAAGGAGGTATCTGGTGGCGCAAGTCGACGAAGGAGGTTATTCTGGTA
TTCAGAGGGACTGAGATCACTTCATTGCAGGATGTGATGACGGATTTAAA
CATCGTGCAGACACCTCTAGGCGATGGCGACAAGCGCCTGGTCCACACGG
GGTTTTGGACCGCATTTAACTCCATCGTGGACGGTGCCTACCACTCATTG
GAAATGGCCGTCGGGAAAGGGGAAGACTGGGCGAAAGGCGGGTGGACAAT
CGACTGCTCAGGCCACTCCCTCGGTGGAGCACTGGCCTCGCTTATGGCGC
ACAATATTGCACATAACTATCCAGAGCTCTGCAGAAACAATCGACTGCAT
ATGTACTCTTTTGGGGCACCAAGAGTGGGCAACCCAGCGTTCTGCGAGGA
GTTCAACATGCTCTTGGGACACGCACTATTCCGCATCGTCAACAAGGCCG
ACGTTGTACCTCGCATGCCGGGACGCAACAATCTAGGCTCTATTGAGTAC
GACCACTTCGGGTTTTGCGTCCTCATTACTGACGAAGCCCTCAAGTCTGT
CTCGATTTACCTGGACGGGCAGCGCAATCAAGATGAGGCTGCTAGCGCCC
CATCTTCCAACCCTCCTTCCGACCCTGCTCCCCTCTCTCCCTCAGATGAA
ACGCTTTCGAGCCTGGTAGGCGAAGGCGTGCCAGTCTCAGCGGCCACAGC
AGCTGTGGACAATTCGAAGGAAGAAACCAAAAAGACCACTATCAGCGATA
TGCTCAATGTGGCGTCTACAAATATCAAGACATTAGGAGGATTCTTGCAG
GGAGAGCCTGTGGGGCCTTATGAGCGAATGGATAAGGGAATGCCAGCTGT
TCCGGTGCGTCGGGGAACCATTCCTGTTCCGCTGAACGTGGCCCCGGAAG
TAGCCATGGGGGAATCGCTTTTGGAAGCCGACGTTCGCGACCATTCAGAG
ATCTCATATTTCGAAGCCATCCAGAAATTCGCAGCTCTTATCGTTGAGGA
GCAAAAAGAGGAAAAAAAGCAAGAAGCATAGGATGACAAACATATAAGTA
CACGGTGTGAAGGAAAGGAAAGTGGATGGGAGACTAGACAGACATTCGTC
GAGACGATGTGACTTTGATCTCAAGGGGTGACAAATAAATAAGATTTAAA
ATAGATGGATAAATCACGGTTCTCGCTAAAATGTGCTAAGTTTGTTGCAT
TGTAAATTTATGCTTTCTGGGTGCGTTTCGGGGGAGAACGAGCCCTCGGG
TCTAATTGATCCTTGCCCTACACCAGAGGAGGGCACCAAAGAAAGTACTG
AGTATTTTTCAC
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protein sequence of rna17

>rna17-protein ID=rna17-protein|Name=rna17|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MRASVMDEIERDLIDHPPCTLHACFHFRANGRISKCQAAVRKIYIYSVFT
NIHLKCGRQTYKENRLDVITCCS
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mRNA from alignment at CM002455.1:55720..55983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna17 ID=rna17|Name=rna17|organism=Nannochloropsis gaditana|type=mRNA|length=264bp|location=Sequence derived from alignment at CM002455.1:55720..55983- (Nannochloropsis gaditana)
ATGCGCGCATCGGTTATGGATGAAATTGAACGTGACTTGATCGATCACCC
TCCCTGCACTTTACATGCATGCTTCCATTTCAGAGCAAATGGGAGAATAA
GTAAGTGTCAAGCTGCAGTACGAAAAGTGAGAGAGATTCTTTGCGTCTAG
CTGTCCGCTTGTCAATAGATATATATCTATTCAGTGTTTACCAACATACA
TCTCAAATGTGGTAGGCAAACATACAAAGAAAATCGTCTGGATGTTATCA
CTTGCTGTAGTTAG
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Coding sequence (CDS) from alignment at CM002455.1:55720..55983-

>rna17 ID=rna17|Name=rna17|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at CM002455.1:55720..55983- (Nannochloropsis gaditana)
ATATATATCTATTCAGTGTTTACCAACATACATCTCAAATGTGGTAGGCA
AACATACAAAGAAAATCGTCTGGATGTTATCACTTGCTGTAGTTAGATGC
GCGCATCGGTTATGGATGAAATTGAACGTGACTTGATCGATCACCCTCCC
TGCACTTTACATGCATGCTTCCATTTCAGAGCAAATGGGAGAATAAGTAA
GTGTCAAGCTGCAGTACGAAAAATATATATCTATTCAGTGTTTACCAACA
TACATCTCAAATGTGGTAGGCAAACATACAAAGAAAATCGTCTGGATGTT
ATCACTTGCTGTAGTTAGATGCGCGCATCGGTTATGGATGAAATTGAACG
TGACTTGATCGATCACCCTCCCTGCACTTTACATGCATGCTTCCATTTCA
GAGCAAATGGGAGAATAAGTAAGTGTCAAGCTGCAGTACGAAAA
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Synonyms
Publications