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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase sdr |
| Orig transcript id | gnl|cribi|Naga_100556g1.7613.mrna |
| Orig protein id | gnl|cribi|Naga_100556g1.7613 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1283325..1286920 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1699 ID=rna1699|Name=rna1699|organism=Nannochloropsis gaditana|type=mRNA|length=1150bp
AGAAAAAAAATGAGACATACGTGGCTGCATGCAGGACGCTGAGTCTTCCA
CCTCCTCCTCCCCTTCCTTCTCCATTCTAGCTGCTCATCTCTACGAGTAC
ACGCTCCTCCTTCCTCCTCCTTCCTCTCCCTCCTCCTCCTCCTCCCCCTC
CTCCTCCTCCTCCTCCTCCTGCCTCCTCGCCCACTCCCGCCTCATCCCCG
CCTCCCACGACCCGCGACTGTGGGAGTTCCCACAAATCAACCAGAAAAAG
GCGGGAAGGAAGAGCAGATTTATGTTTGCGACCGTCTTCAATCAGCACGG
GGAGGGAGAGGGCTTCGTGAAGGTAGATTTGGAGGGAGAGAGGGGAGAAG
GAGGGGCGCCCTACGCAGAAGTCAAGTATGAGGAAGGGACCTTCGGCGGG
GAAGTCATCTTTGTGCCACGGGAGGGAGAGAGGGAGGGCGGTGGAGAAAG
GGAGGAGGACGACGGCTATCTGCTTACCTTCACCCATTCGTATCCGAGAA
ACGTGAGTGAATTTCGGGTCTATGATGCGAGGAGGATGGAGGGAGGGGGG
GAGGAAGGGAAGGAGGGAGGGAGGGAGGCGTTGGTGGCCTCGGTGGCGCT
GCCTCGACGGGTCCCATGGGGCTTTCACGCCCTCTGGGTGGAGCAAAACG
AGCTCGAGAATCAACGCGACAGAGTCGTGTTAAGGAAAGGGAAGGTCGTG
GAGGAGGGAGGAGGGGCGGCAAGGAAGGCGAAGGAGGAACTCTGATGCCA
AGGAGGAAAAGCGAGGGGGCGTGGATCGTCGAGCGAGGACAAAGGATGGA
AGGAGGGGGAGAGTGGAGGCTGAAGGGAGGGGGAGAATCAGAAGAAGGGA
GTGGGGAAGAGGTAAGAGGGAGGAGAGAGGGAGAGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGAGGTTGCCAGGATGAGGCGTGCTCCTGCGAGGGC
ACTATAGCGTGGTTCCATGCATCGTCTTGACCTTTGACACTTGCACACAC
GTACATACATGAAAAAGGAAGGAAAGATATTCACCAAAAAGGCACGACAA
TAAACAAGAATGTGAAGCCTCTTGTCTGATTCGTGTGAATGTTGGATGGA
ATTTGTCATGCCTGTGCTCGCAAAATGATACATTGTGCGCCCTTCTCACA back to topprotein sequence of rna1699 >rna1699-protein ID=rna1699-protein|Name=rna1699|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MFPKPQKKDNIMASVDLISGLYGVLLAFGIMLLAVLLLPLVVYLISRKPY
PTLKTLSSTKTLGGVLVTGASTGIGRHAAFYLARQGFLVFAGVRKPADGE
ALLRAYLDEESKQTSKSRSRGKVSPAKQGVLHFLILDITKPFQIAAAVRS
VQEELSRRGGLPFLGLVNNAGVTGGADPVEFLPLEHNRNTFEVNFYGPLA
VTQAFLPLLRQAPQGRIVNVSSMAGIVTRPLGATYSCTKFALEALSDTLR
VELGHLGVSVSVIQPGYIRSEIFGKADEQHQHRMQELPVECSALYGHLYT
VDKTNALIAKASDPIVCSRAIHHALTSPYPKTRYLVGNVNGTPAYWLGWG
IWLLNDRLMDRMITPPFKKGAL back to topmRNA from alignment at CM002457.1:1283325..1286920- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1699 ID=rna1699|Name=rna1699|organism=Nannochloropsis gaditana|type=mRNA|length=3596bp|location=Sequence derived from alignment at CM002457.1:1283325..1286920- (Nannochloropsis gaditana)
AACTGAAACAAAAACAACACATAAGTATATCTTTAAGAAAGGCGGAAAAT
AAATGGCAAGTTGAAGCCTCGACGCGCGAGACTGCCGCAACCATCCCATC
TTGCCCTGCAAGAAAAGAACCACTTCCCAAGCACAAACTGGACTGACGAG
CAGTTCTTCATCATCATTTCTATCAAGACGTAGTGTTGAATGCTGCGGAA
AGTCGATTTAGTGGTCAAGAGCAAATGTTTAACCAAAGATGCATGGCTTA
GTGCCCCACTGAACACGACCCCCAACATGTCGCACAGGTCCTCTTACCCC
AAATCCTTTGGGTTCGGAAGGCCACGATACCTTTGCACCACCACCTTACG
GAGGGGGTTTGGCAAAGTCTCACTTTTCTACTGGACTTACTATCCATCCC
CTCACAGCCGGCGTAAACCATGGTCTCCCCTGACATCCGTCAACGCAAAC
CGGGCCTTGCGGCATCTGAGGCGGACGACGTGGTCGTGGACGATGGAGAG
AGCGAAGAGGAGGTGGAGTACGAAGACGAGCCAGACGAACAGGAGATGAG
TGCGTTGGATTATTTGCACTCACAGGGATTATCCTTGAAGTCACTGAAAG
ATCCTTCCAAGGCCAAGACGGGAGCCACATGTCGTGCCGAGGGAAGCAGC
AGGGACAAGGACGGCGGACAGAAAGAGGTTGCGGCAAATGTCAAAGCCGC
AATGAAAGCACGAAGGAAAAAGGCTCTGGCGGAAGAGAATGAGAAGCAGG
CTAAAAAAGAAGGGGGAATAAAGTGGATGCCGCTCCTCTTTCTGCTGGTA
AGTGTCCTCACCTAGATAGAGAAAGGCTATTCTCGACGAACCCGTTGCGA
GCAACTCCTCTTTTCTTGTTTACACTCAACCAGTTCATGATGGGGCCTGC
GATCTTCACGGCGTTTGACTACCTGTTCCAGCTTCCTATGTTTGCTCGCT
TTCATCGCAAACCAGACATGCGTCAGTGTTTAACCAATTACTACCGCAAG
GTAAAGCTTGAAATGGAGGGAAATGTCAAGAGAATGATGGAGGCATGGAT
AGCTGGACCCTGAATTCCTTGGAAGGAGTGCCGCTGGATGATTTATAAGG
CCCTTTGACGACCTATAACGCCCTTGCTTCCCTGTTCACTATGTTTCCGT
TCCAGGTGAGCCCCGACCGCTTGAGCGAAGTGAATGTGGACGATATTTTG
CGAAAATACAAGGGGCGAGAATCCACGATGATCAGGAATTTGGAAAACCG
CTATCGCCGGAAATGGCAGTGTCCTTGAAAAGAAGCGCGGAGAAGCAGAC
AAATAGGGGTGGGAAGGGAAGAAAAACAGAGCGGCGAGAAATTTGTGTTT
TCTCTTTCTTCTCCAACTTCTTCTTTCTTGTTTGTACACAAATTCAAATC
TGCTGGACGAATGTGTGGGCTTTGGAACATAAGACATGACGGGCTGCAAG
AGAGCGCAGTTTAGGATTTGAGCAATCATTAAATTCGAAAAGCAGAAAAC
TCAATCATGGTCCGGCATTTATGCATCGGGATAGATAGCTTTCTACCTGC
GTTTAGCATCGCGTTTGAGATCTGACAGAGAAAACAAGTGCGATCTTGCT
AATGGGAATTTCAGTCATATTTCAAGTATTTGTTGGCAACCTGCTTTCTT
GATCCAGCCACTCCTTTGCCGACCAGCCACTGCGTAAACCTATTCTTATC
GAAAGGATTTCTCAGAGTAATCGCAGCTTAGTCTTCAGTACTTTAGTGTG
TCTTTTGTAAGCTGGATCGGCCCATGACAAAAAACTTCAACCTCCTCCCA
CTGCTGTTCCTGACCCGATGCTTATGTGGGTAGGGTGCACCATTACCCGT
TGTGGTTCTAATGTTCCCGAAACCACAAAAAAAAGATAATATAATGGCCT
CCGTGGATTTGATCTCCGGCTTGTACGGGGTTCTCCTAGCGTTTGGAATC
ATGCTGCTTGCCGTTCTCCTCCTCCCTCTCGTCGTCTACCTGATCAGCCG
AAAGCCTTATCCCACTCTCAAAACATTGAGCAGCACTAAAACCCTCGGCG
GTGTTCTCGTCACTGGAGCTTCTACAGGTATTGGCCGACACGCTGCATTT
TATTTGGCTAGACAAGGCTTTTTAGTCTTCGCAGGGGTGCGGAAACCTGC
AGATGGCGAAGCACTCTTGAGAGCTTACCTAGATGAAGAAAGCAAACAAA
CAAGTAAAAGCCGCAGCCGGGGCAAGGTATCCCCGGCAAAACAAGGCGTC
TTACACTTCCTCATTTTAGACATCACCAAACCTTTTCAAATCGCCGCTGC
CGTGCGGAGTGTTCAGGAGGAATTAAGTCGGAGGGGCGGCCTCCCTTTCT
TGGGCCTCGTGAATAATGCTGGCGTCACAGGCGGGGCCGATCCCGTCGAA
TTTCTTCCGCTAGAGCACAATCGAAATACCTTTGAGGTCAATTTTTACGG
ACCCTTAGCGGTCACTCAAGCTTTTTTGCCCCTGCTTCGCCAAGCTCCAC
AAGGCAGGATCGTCAACGTCAGTAGCATGGCTGGCATTGTCACTCGACCC
CTAGGAGCTACGTATTCCTGCACAAAATTCGCCTTAGAGGCTTTAAGTGA
TACACTTAGGGTAGAGCTAGGACATTTGGGGGTGTCTGTATCTGTCATTC
AGCCTGGGTATATCCGCAGTGAAATCTTCGGGAAAGCGGACGAACAGCAC
CAACATCGCATGCAAGAGCTCCCAGTGGAATGCAGCGCCCTCTATGGACA
TTTGTACACGGTCGATAAAACGAATGCGCTTATTGCTAAAGCTTCCGACC
CCATTGTCTGCTCTCGCGCGATTCACCACGCGTTGACAAGTCCTTACCCA
AAGGTAAGTCTTCTTTGGATTCGGAGAGCTTGCGGTAGACGAAGCTCTTG
TTTTAGGATCTATCCACAAGAAAGGTTTTACTGACATGCCATATGCTCAC
GGGCGCGAACAAAAGGCCGGCGGAGAATCGTTATCTTGTCATTAATTGCC
CACTATTCTGTTTAATTTTGGGTGCAAGTTGACAGGCAGCCCACTTTGTT
GGATTTTAGTCGGGTCCAGTCGATTGGAAAAGGGCACATGTCACCCCTCG
TTTATCTTGTCGCAAGGGGTAATGTTTCCCCTCTCTTATCCTCCTCCCTC
CCTCCCTGCCTCCCTCCCTCCCTCCTCGCACCCTCAGACCAGATATTTGG
TAGGAAATGTGAACGGCACGCCTGCTTACTGGCTAGGATGGGGCATTTGG
CTTCTAAACGATCGGTTGATGGACCGCATGATTACGCCGCCATTCAAGAA
AGGGGCCCTTTGAAGACTCAATCAGAGGCAGGAGGACGAGGGAGCGAGAA
AGTGAAACGAGGCATGTGGAGGACTGTCAGCCACCACAAGAGGACTGACC
GGTTGCAAGTAAATTAGGAAACGGAGATGGAGTACAAGATAATGCTAGAA
TATATCATCTATAAAATGCTTGGCAGTACGCGGAGCTAGTGCCCGCGGTA
CTTCATTCGAAATATTGTTTCCTCGTGTGCAGTTGAGAAGGCCATGCACA
GTCATGACCCGATAATGTGTGCACATAGAGAAATTGCATATTCTTC back to topCoding sequence (CDS) from alignment at CM002457.1:1283325..1286920- >rna1699 ID=rna1699|Name=rna1699|organism=Nannochloropsis gaditana|type=CDS|length=2238bp|location=Sequence derived from alignment at CM002457.1:1283325..1286920- (Nannochloropsis gaditana)
ACCAGATATTTGGTAGGAAATGTGAACGGCACGCCTGCTTACTGGCTAGG
ATGGGGCATTTGGCTTCTAAACGATCGGTTGATGGACCGCATGATTACGC
CGCCATTCAAGAAAGGGGCCCTTTGAATGTTCCCGAAACCACAAAAAAAA
GATAATATAATGGCCTCCGTGGATTTGATCTCCGGCTTGTACGGGGTTCT
CCTAGCGTTTGGAATCATGCTGCTTGCCGTTCTCCTCCTCCCTCTCGTCG
TCTACCTGATCAGCCGAAAGCCTTATCCCACTCTCAAAACATTGAGCAGC
ACTAAAACCCTCGGCGGTGTTCTCGTCACTGGAGCTTCTACAGGTATTGG
CCGACACGCTGCATTTTATTTGGCTAGACAAGGCTTTTTAGTCTTCGCAG
GGGTGCGGAAACCTGCAGATGGCGAAGCACTCTTGAGAGCTTACCTAGAT
GAAGAAAGCAAACAAACAAGTAAAAGCCGCAGCCGGGGCAAGGTATCCCC
GGCAAAACAAGGCGTCTTACACTTCCTCATTTTAGACATCACCAAACCTT
TTCAAATCGCCGCTGCCGTGCGGAGTGTTCAGGAGGAATTAAGTCGGAGG
GGCGGCCTCCCTTTCTTGGGCCTCGTGAATAATGCTGGCGTCACAGGCGG
GGCCGATCCCGTCGAATTTCTTCCGCTAGAGCACAATCGAAATACCTTTG
AGGTCAATTTTTACGGACCCTTAGCGGTCACTCAAGCTTTTTTGCCCCTG
CTTCGCCAAGCTCCACAAGGCAGGATCGTCAACGTCAGTAGCATGGCTGG
CATTGTCACTCGACCCCTAGGAGCTACGTATTCCTGCACAAAATTCGCCT
TAGAGGCTTTAAGTGATACACTTAGGGTAGAGCTAGGACATTTGGGGGTG
TCTGTATCTGTCATTCAGCCTGGGTATATCCGCAGTGAAATCTTCGGGAA
AGCGGACGAACAGCACCAACATCGCATGCAAGAGCTCCCAGTGGAATGCA
GCGCCCTCTATGGACATTTGTACACGGTCGATAAAACGAATGCGCTTATT
GCTAAAGCTTCCGACCCCATTGTCTGCTCTCGCGCGATTCACCACGCGTT
GACAAGTCCTTACCCAAAGACCAGATATTTGGTAGGAAATGTGAACGGCA
CGCCTGCTTACTGGCTAGGATGGGGCATTTGGCTTCTAAACGATCGGTTG
ATGGACCGCATGATTACGCCGCCATTCAAGAAAGGGGCCCTTTGAATGTT
CCCGAAACCACAAAAAAAAGATAATATAATGGCCTCCGTGGATTTGATCT
CCGGCTTGTACGGGGTTCTCCTAGCGTTTGGAATCATGCTGCTTGCCGTT
CTCCTCCTCCCTCTCGTCGTCTACCTGATCAGCCGAAAGCCTTATCCCAC
TCTCAAAACATTGAGCAGCACTAAAACCCTCGGCGGTGTTCTCGTCACTG
GAGCTTCTACAGGTATTGGCCGACACGCTGCATTTTATTTGGCTAGACAA
GGCTTTTTAGTCTTCGCAGGGGTGCGGAAACCTGCAGATGGCGAAGCACT
CTTGAGAGCTTACCTAGATGAAGAAAGCAAACAAACAAGTAAAAGCCGCA
GCCGGGGCAAGGTATCCCCGGCAAAACAAGGCGTCTTACACTTCCTCATT
TTAGACATCACCAAACCTTTTCAAATCGCCGCTGCCGTGCGGAGTGTTCA
GGAGGAATTAAGTCGGAGGGGCGGCCTCCCTTTCTTGGGCCTCGTGAATA
ATGCTGGCGTCACAGGCGGGGCCGATCCCGTCGAATTTCTTCCGCTAGAG
CACAATCGAAATACCTTTGAGGTCAATTTTTACGGACCCTTAGCGGTCAC
TCAAGCTTTTTTGCCCCTGCTTCGCCAAGCTCCACAAGGCAGGATCGTCA
ACGTCAGTAGCATGGCTGGCATTGTCACTCGACCCCTAGGAGCTACGTAT
TCCTGCACAAAATTCGCCTTAGAGGCTTTAAGTGATACACTTAGGGTAGA
GCTAGGACATTTGGGGGTGTCTGTATCTGTCATTCAGCCTGGGTATATCC
GCAGTGAAATCTTCGGGAAAGCGGACGAACAGCACCAACATCGCATGCAA
GAGCTCCCAGTGGAATGCAGCGCCCTCTATGGACATTTGTACACGGTCGA
TAAAACGAATGCGCTTATTGCTAAAGCTTCCGACCCCATTGTCTGCTCTC
GCGCGATTCACCACGCGTTGACAAGTCCTTACCCAAAG back to top
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