rna1695, rna1695 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1695
Unique Name	rna1695
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	810
Alignment location	CM002457.1:1272015..1273633 -

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Properties


Property Name	Value
Product	heat shock protein atpase subunit
Orig transcript id	gnl\|cribi\|Naga_100737g3.3613.mrna
Orig protein id	gnl\|cribi\|Naga_100737g3.3613
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1272015..1273633 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100737g3	gene1632	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1695	rna1695-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28981.1	cds1691	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1272015..1273633-
coding sequence from alignment at CM002457.1:1272015..1273633-

mRNA sequence

>rna1695 ID=rna1695|Name=rna1695|organism=Nannochloropsis gaditana|type=mRNA|length=810bp
TCTCCTCCTCCTCCTCCTCCCTTCCTCCTCCCCTGTCCCCCGCGGGCAGG
CATTGTTTTCATCGACGAGATCGACAAGCTTTGCGGCTCCTCCAGCGACC
ATCCGAGCACGTCCGTGACCACGGGCGGGAGCAGCAGCAGCAACAAAGGC
GAGGGTGTCCAGCGCGAGCTCCTCACCCTCGTGGAAGGATGCGCTGTCCC
CACACGCTACGGCTCGATTCGAACCGACTTTATCCTCTTCATCGCCTCGG
GGGCCTTCCACAATAAGAGCCCCTCCGACCTCCTCCCCGAGCTTCAAGGC
CGTTTCCCTGTCCGGGTGACGCTTCAGCCATTGAAGAAGGAGGATTTGAT
TCAAATTTTGAGCACCAAGAAGTTCAACCTACTGGTCCAAACCGTCCAGC
TACTCGCGACGGAAGGGGTGGAGGTGGAGTTCACGGACTGCGGCGTCGAG
GCCATGGCTGCTTTCGCCCAGCTGATCAATAGGACGCAGCAAGACGTCGG
GGCCCGGCGCTTGAACACTGTGATGCATCGGGTGCTGGAAGACCTGAGCT
ACGCCGCGCCAAGAAGGAGAGGGCAGAAAGTGGTGGTGGACGCGACCTTT
GTGGAGAATCGCTTGAAGGAGTTTGATTTAACCAAACAAGATAACTTGAG
CCGGTATATTCTGTGAGAGAACAGATAGAAGAGCAGTGTGAGAGGACCAG
GATGCCTCCAGGCATGGCCGAGGCCTGAAAGAACACAATAGCGTGCGAGA
AAGAGCGCAAGTTTTGGTGTTGATCGTCGTAGAGAATACGATCATGAGAA
TTCATATGTT

protein sequence of rna1695

>rna1695-protein ID=rna1695-protein|Name=rna1695|organism=Nannochloropsis gaditana|type=polypeptide|length=255bp
MLPRVFQRTRVSFTSAIPTLSRRVVGSCPLAASSQRNNREEVNTTTRKPY
ATSVSKEATRHAHAPVDDTATSTTSAGAAGVSGVCDDPGKSNSQLSSDSF
PEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILM
KGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLD
NAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSRE
GGELR

mRNA from alignment at CM002457.1:1272015..1273633-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1695 ID=rna1695|Name=rna1695|organism=Nannochloropsis gaditana|type=mRNA|length=1619bp|location=Sequence derived from alignment at CM002457.1:1272015..1273633- (Nannochloropsis gaditana)
ATGCTCCCACGGGTTTTCCAGCGCACCCGTGTTTCCTTTACGTCCGCAAT
TCCGACGCTTTCTCGCAGAGTCGTCGGCTCATGCCCCCTAGCGGCGTCTT
CTCAAAGAAACAATCGCGAGGAGGTTAATACCACAACCAGGAAACCCTAC
GCCACGTCCGTCTCGAAAGAAGCGACAAGGCATGCACACGCTCCCGTCGA
CGACACAGCAACGTCGACAACCTCGGCTGGTGCAGCCGGCGTGTCGGGTG
TCTGCGATGACCCCGGCAAAAGCAATTCACAGCTAAGTTCCGATTCGTTC
CCGGAGGATATAGTGGCACATTTGGATAAGTATGTCATCGGGCAAGAGGA
GGCCAAAAAAGCCACGGCCATCGCTATGCGCATGCGTTGGCGTCGAAACC
AGCTCCCGGAAGATTTGCGGGCGGAAGTGACGCCCTCAAATATTTTAATG
AAAGGACCCACCGGGACGGGCAAGACCGAGATTGCCAGGCGTCTGAGTGC
ACTGGCCGAAGCCCCATTCATTAAAGTGGAAGCCACGCGATACACGGAAG
TGGTGAGTGAAGCAGCGGGTGGCTGTTTTCGTCCGGATAGAGCCACGACA
AGGACCATGGCAACAGTCACCGTCTCACCCATGCCCTCCCCCCTCCTCTT
CCTCTTTCCCTCCCTTCCCCCCTTCCTCTTTCGCTCCCTCCCGTCAGGGT
TTCGTGGGCGCCAACACCAGCGACATGATCAAGGGACTCCTGGACAACGC
CGTGCGCCTAGAGCGGGAGCTGGAGAAGAAGAATGTGGCGGCGGAGGCCC
ACGCCAAGGCCGAGACTAAGGTCCTCGACCTCCTCAAGGTACGTCGAGCT
CCCTGCCCTCCCTCCTTCCCTTCCTCCCTGCTCTCGTCCCCTTTATCGGA
CCTCCCTCCTTTCTTACCCTTTACCTTCATCCTCTTGCTCAGCTCTTCCT
CTTTCCCACCCTTTCCATCCTTTCATATCTTCTCTTCCTGCCACCCTTCC
CTCCCCTACATACATATACATACTATCTTGTCCATCCCTCTTCATTTTTT
CTCTTTCCCTCCATATCTCTCTCACGCCCTCCTTCCCCCTCCGTGCGGCT
TCCTCATTCTTCCCTCCCGCCTCTCCGCGGTTAATTTCTCCCCCTCCCTC
CTTCCCTCCCTCCGCCCCTCCCTCGTTCATTTCTCCCTTCCTTCCCCTCC
TCCCTTTCCCTCCCCCTTATCCAGCTAGGAAATCCCAAGGGTTTGAGTTC
CGAGCAACAACAAGACTTAAGGAGCCGTTTGCGTGGAGGCGAGTTCGACC
ATTACACCGTCCGCGTCCCCCCCCGAGAACCCCGGTCGCCCTCCTCCCCT
TCCTCTCTCCACCCCCTCTCCGACTTGTTGGACGGCTTGGACCTGGGGAA
CATCAATATGGGCCAAGGAGGCTTCGTCACGATCGAGCGGGCCCCGGGCC
CCCCCGGGGGAAGGGGGGGAAGGTGGGGGGGAAGGGGGGGCGGGGGGGAG
AAGCAGGTCCTTTCGGTCAGGAAGGCTTTGGAGCGGTACGTGGAGGAGTA
CGAGGAGGCGCTGATGAATGAGGAGGACGTGATCATGCGCGCCAAGGAGA
AGGCGGAGAATTGCGGTGA

Coding sequence (CDS) from alignment at CM002457.1:1272015..1273633-

>rna1695 ID=rna1695|Name=rna1695|organism=Nannochloropsis gaditana|type=CDS|length=3072bp|location=Sequence derived from alignment at CM002457.1:1272015..1273633- (Nannochloropsis gaditana)
GAGAAGGCGGAGAATTGCGGTGACTAGGAAATCCCAAGGGTTTGAGTTCC
GAGCAACAACAAGACTTAAGGAGCCGGTTTCGTGGGCGCCAACACCAGCG
ACATGATCAAGGGACTCCTGGACAACGCCGTGCGCCTAGAGCGGGAGCTG
GAGAAGAAGAATGTGGCGGCGGAGGCCCACGCCAAGGCCGAGACTAAGGT
CCTCGACCTCCTCAAGATGCTCCCACGGGTTTTCCAGCGCACCCGTGTTT
CCTTTACGTCCGCAATTCCGACGCTTTCTCGCAGAGTCGTCGGCTCATGC
CCCCTAGCGGCGTCTTCTCAAAGAAACAATCGCGAGGAGGTTAATACCAC
AACCAGGAAACCCTACGCCACGTCCGTCTCGAAAGAAGCGACAAGGCATG
CACACGCTCCCGTCGACGACACAGCAACGTCGACAACCTCGGCTGGTGCA
GCCGGCGTGTCGGGTGTCTGCGATGACCCCGGCAAAAGCAATTCACAGCT
AAGTTCCGATTCGTTCCCGGAGGATATAGTGGCACATTTGGATAAGTATG
TCATCGGGCAAGAGGAGGCCAAAAAAGCCACGGCCATCGCTATGCGCATG
CGTTGGCGTCGAAACCAGCTCCCGGAAGATTTGCGGGCGGAAGTGACGCC
CTCAAATATTTTAATGAAAGGACCCACCGGGACGGGCAAGACCGAGATTG
CCAGGCGTCTGAGTGCACTGGCCGAAGCCCCATTCATTAAAGTGGAAGCC
ACGCGATACACGGAAGTGGAGAAGGCGGAGAATTGCGGTGACTAGGAAAT
CCCAAGGGTTTGAGTTCCGAGCAACAACAAGACTTAAGGAGCCGGTTTCG
TGGGCGCCAACACCAGCGACATGATCAAGGGACTCCTGGACAACGCCGTG
CGCCTAGAGCGGGAGCTGGAGAAGAAGAATGTGGCGGCGGAGGCCCACGC
CAAGGCCGAGACTAAGGTCCTCGACCTCCTCAAGATGCTCCCACGGGTTT
TCCAGCGCACCCGTGTTTCCTTTACGTCCGCAATTCCGACGCTTTCTCGC
AGAGTCGTCGGCTCATGCCCCCTAGCGGCGTCTTCTCAAAGAAACAATCG
CGAGGAGGTTAATACCACAACCAGGAAACCCTACGCCACGTCCGTCTCGA
AAGAAGCGACAAGGCATGCACACGCTCCCGTCGACGACACAGCAACGTCG
ACAACCTCGGCTGGTGCAGCCGGCGTGTCGGGTGTCTGCGATGACCCCGG
CAAAAGCAATTCACAGCTAAGTTCCGATTCGTTCCCGGAGGATATAGTGG
CACATTTGGATAAGTATGTCATCGGGCAAGAGGAGGCCAAAAAAGCCACG
GCCATCGCTATGCGCATGCGTTGGCGTCGAAACCAGCTCCCGGAAGATTT
GCGGGCGGAAGTGACGCCCTCAAATATTTTAATGAAAGGACCCACCGGGA
CGGGCAAGACCGAGATTGCCAGGCGTCTGAGTGCACTGGCCGAAGCCCCA
TTCATTAAAGTGGAAGCCACGCGATACACGGAAGTGGAGAAGGCGGAGAA
TTGCGGTGACTAGGAAATCCCAAGGGTTTGAGTTCCGAGCAACAACAAGA
CTTAAGGAGCCGGTTTCGTGGGCGCCAACACCAGCGACATGATCAAGGGA
CTCCTGGACAACGCCGTGCGCCTAGAGCGGGAGCTGGAGAAGAAGAATGT
GGCGGCGGAGGCCCACGCCAAGGCCGAGACTAAGGTCCTCGACCTCCTCA
AGATGCTCCCACGGGTTTTCCAGCGCACCCGTGTTTCCTTTACGTCCGCA
ATTCCGACGCTTTCTCGCAGAGTCGTCGGCTCATGCCCCCTAGCGGCGTC
TTCTCAAAGAAACAATCGCGAGGAGGTTAATACCACAACCAGGAAACCCT
ACGCCACGTCCGTCTCGAAAGAAGCGACAAGGCATGCACACGCTCCCGTC
GACGACACAGCAACGTCGACAACCTCGGCTGGTGCAGCCGGCGTGTCGGG
TGTCTGCGATGACCCCGGCAAAAGCAATTCACAGCTAAGTTCCGATTCGT
TCCCGGAGGATATAGTGGCACATTTGGATAAGTATGTCATCGGGCAAGAG
GAGGCCAAAAAAGCCACGGCCATCGCTATGCGCATGCGTTGGCGTCGAAA
CCAGCTCCCGGAAGATTTGCGGGCGGAAGTGACGCCCTCAAATATTTTAA
TGAAAGGACCCACCGGGACGGGCAAGACCGAGATTGCCAGGCGTCTGAGT
GCACTGGCCGAAGCCCCATTCATTAAAGTGGAAGCCACGCGATACACGGA
AGTGGAGAAGGCGGAGAATTGCGGTGACTAGGAAATCCCAAGGGTTTGAG
TTCCGAGCAACAACAAGACTTAAGGAGCCGGTTTCGTGGGCGCCAACACC
AGCGACATGATCAAGGGACTCCTGGACAACGCCGTGCGCCTAGAGCGGGA
GCTGGAGAAGAAGAATGTGGCGGCGGAGGCCCACGCCAAGGCCGAGACTA
AGGTCCTCGACCTCCTCAAGATGCTCCCACGGGTTTTCCAGCGCACCCGT
GTTTCCTTTACGTCCGCAATTCCGACGCTTTCTCGCAGAGTCGTCGGCTC
ATGCCCCCTAGCGGCGTCTTCTCAAAGAAACAATCGCGAGGAGGTTAATA
CCACAACCAGGAAACCCTACGCCACGTCCGTCTCGAAAGAAGCGACAAGG
CATGCACACGCTCCCGTCGACGACACAGCAACGTCGACAACCTCGGCTGG
TGCAGCCGGCGTGTCGGGTGTCTGCGATGACCCCGGCAAAAGCAATTCAC
AGCTAAGTTCCGATTCGTTCCCGGAGGATATAGTGGCACATTTGGATAAG
TATGTCATCGGGCAAGAGGAGGCCAAAAAAGCCACGGCCATCGCTATGCG
CATGCGTTGGCGTCGAAACCAGCTCCCGGAAGATTTGCGGGCGGAAGTGA
CGCCCTCAAATATTTTAATGAAAGGACCCACCGGGACGGGCAAGACCGAG
ATTGCCAGGCGTCTGAGTGCACTGGCCGAAGCCCCATTCATTAAAGTGGA
AGCCACGCGATACACGGAAGTG

Synonyms

Publications