EWM28981.1, cds1691 (CDS) Nannochloropsis gaditana

Overview
NameEWM28981.1
Unique Namecds1691
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1273082..1273633 -
Alignment locationCM002457.1:1272796..1272936 -
Alignment locationCM002457.1:1272358..1272409 -
Alignment locationCM002457.1:1272015..1272037 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28981.1
Productheat shock protein atpase subunit
Orig transcript idgnl|cribi|Naga_100737g3.3613.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1273082..1273633 -
CM002457.1supercontigCM002457.1:1272796..1272936 -
CM002457.1supercontigCM002457.1:1272358..1272409 -
CM002457.1supercontigCM002457.1:1272015..1272037 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0070011peptidase activity, acting on L-amino acid peptides
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005737cytoplasm
GO:0009376HslUV protease complex
Vocabulary: INTERPRO
TermDefinition
IPR004491HslU
IPR011704ATPase_dyneun-rel_AAA
IPR027417P-loop_NTPase
Homology
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|585111475|gb|EWM28981.1| (heat shock protein atpase subunit [Nannochloropsis gaditana])

HSP 1 Score: 522.702 bits (1345), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:    1 MLPRVFQRTRVSFTSAIPTLSRRVVGSCPLAASSQRNNREEVNTTTRKPYATSVSKEATRHAHAPVDDTATSTTSAGAAGVSGVCDDPGKSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSREGGELR 255
            MLPRVFQRTRVSFTSAIPTLSRRVVGSCPLAASSQRNNREEVNTTTRKPYATSVSKEATRHAHAPVDDTATSTTSAGAAGVSGVCDDPGKSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSREGGELR
Sbjct:    1 MLPRVFQRTRVSFTSAIPTLSRRVVGSCPLAASSQRNNREEVNTTTRKPYATSVSKEATRHAHAPVDDTATSTTSAGAAGVSGVCDDPGKSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSREGGELR 255          
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|553194463|ref|XP_005855961.1| (heat shock protein atpase subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422293104|gb|EKU20404.1| heat shock protein atpase subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 499.204 bits (1284), Expect = 1.269e-177
Identity = 248/255 (97.25%), Postives = 248/255 (97.25%), Query Frame = 0
Query:    1 MLPRVFQRTRVSFTSAIPTLSRRVVGSCPLAASSQRNNREEVNTTTRKPYATSVSKEATRHAHAPVDDTATSTTSAGAAGVSGVCDDPGKSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSR-EGGEL 254
            MLPRVFQRTRVSFTSAIPT  RRVVGSCPLAASSQ  NREEVNTTTRKPYATSVSKEATRHAHAPVDDTATSTTSAGAAGVSGVCDDPGKSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSR  GGE 
Sbjct:    1 MLPRVFQRTRVSFTSAIPTPPRRVVGSCPLAASSQSVNREEVNTTTRKPYATSVSKEATRHAHAPVDDTATSTTSAGAAGVSGVCDDPGKSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSRLRGGEF 255          
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|1200546710|gb|OUW58629.1| (HslU--HslV peptidase ATPase subunit [Pelagibacteraceae bacterium TMED197])

HSP 1 Score: 173.711 bits (439), Expect = 7.793e-48
Identity = 91/168 (54.17%), Postives = 122/168 (72.62%), Query Frame = 0
Query:   84 VCDDPGKSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSREG 251
            V  +  K  S++S+ S P +IV+ LD+YVIGQ+EAKKA A+A+R RWRR  L +++R EV P NILM GPTG GKTEI+RRLS LAEAPFIKVEATR+TEVG+VG +   +I+ L++ A+ +ERE ++K V A+A  KAE KVLD L +GN   +++ +    R R G
Sbjct:   12 VVKNKTKDXSKVSALS-PREIVSELDRYVIGQKEAKKAVAVALRNRWRRQALSDEMRDEVLPKNILMIGPTGVGKTEISRRLSKLAEAPFIKVEATRFTEVGYVGRDVEQIIRDLIEIAIAMERERKRKEVKAKAELKAEEKVLDAL-VGNKASVATRESFRKRLRNG 177          
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|1200612010|gb|OUX21034.1| (HslU--HslV peptidase ATPase subunit [Pelagibacteraceae bacterium TMED253])

HSP 1 Score: 172.94 bits (437), Expect = 1.307e-47
Identity = 89/162 (54.94%), Postives = 122/162 (75.31%), Query Frame = 0
Query:   90 KSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSREG 251
            K +S++S+ S P +IV+ LD+YVIGQ+EAKKA A+A+R RWRR  L +++R EV P NILM GPTG GKTEI+RRLS LAEAPFIKVEATR+TEVG+VG +   +++ L++ A+ +ERE ++K V A+A  KAE KVLD L +GN   +++++    R R G
Sbjct:   18 KKSSKVSALS-PREIVSELDRYVIGQKEAKKAVAVALRNRWRRQALSDEMRDEVLPKNILMIGPTGVGKTEISRRLSKLAEAPFIKVEATRFTEVGYVGRDVEQIVRDLIEIAIAMEREKKRKEVKAKAELKAEDKVLDAL-VGNKASVATKESFRKRLRNG 177          
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|1129587001|ref|WP_075534202.1| (HslU--HslV peptidase ATPase subunit [Candidatus Pelagibacter ubique])

HSP 1 Score: 172.555 bits (436), Expect = 1.994e-47
Identity = 89/160 (55.62%), Postives = 120/160 (75.00%), Query Frame = 0
Query:   92 NSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSREG 251
            NS++S+ S P +IV+ LD+YVIGQ+EAKKA A+A+R RWRR  L +++R EV P NILM GPTG GKTEI+RRLS LAEAPFIKVEATR+TEVG+VG +   +++ L++ A+ +ERE ++K V A+A  KAE KVLD L +GN   +++ +    R R G
Sbjct:   20 NSKVSALS-PREIVSELDRYVIGQKEAKKAVAVALRNRWRRQALTDEMRDEVLPKNILMIGPTGVGKTEISRRLSRLAEAPFIKVEATRFTEVGYVGRDVEQIVRDLIEIAIAMERERKRKEVKAKAELKAEEKVLDAL-VGNKASVATRESFRKRLRNG 177          
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|939227480|gb|KPU81987.1| (ATP-dependent protease [SAR11 cluster bacterium PRT-SC02])

HSP 1 Score: 172.555 bits (436), Expect = 2.415e-47
Identity = 90/162 (55.56%), Postives = 119/162 (73.46%), Query Frame = 0
Query:   90 KSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSREG 251
            K  S++S+ S P +IV+ LD+YVIGQ+EAKKA A+A+R RWRR  L E++R EV P NILM GPTG GKTEI+RRLS LAEAPFIKVEATR+TEVG+VG +   +I+ L++ A+ +ERE ++K V A+A   AE KVLD L +GN   +++ +    R R G
Sbjct:   17 KKESKVSALS-PREIVSELDRYVIGQKEAKKAVAVALRNRWRRQALSEEMRDEVLPKNILMIGPTGVGKTEISRRLSKLAEAPFIKVEATRFTEVGYVGRDVEQIIRDLIEIAIAMEREKKRKEVNAKAQQMAEEKVLDAL-VGNKASVATRESFRKRLRNG 176          
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|1200619010|gb|OUX27644.1| (HslU--HslV peptidase ATPase subunit [Rickettsiales bacterium TMED254])

HSP 1 Score: 172.17 bits (435), Expect = 2.912e-47
Identity = 90/168 (53.57%), Postives = 121/168 (72.02%), Query Frame = 0
Query:   84 VCDDPGKSNSQLSSDSFPEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRSREG 251
            + D   K+ S++S+ S P +IV+ LD+YVIGQ+EAKKA A+A+R RWRR  L  D++ EV P NILM GPTG GKTEI+RRLS LAEAPFIKVEATR+TEVG+VG +   +I+ L++ A+ +ERE ++K V A+A   AE KVLD L +GN   +++ +    R R G
Sbjct:   13 IKDKKNKTESRVSALS-PREIVSELDRYVIGQKEAKKAVAVALRNRWRRQALTSDMKEEVLPKNILMIGPTGVGKTEISRRLSKLAEAPFIKVEATRFTEVGYVGRDVEQIIRDLIEIAIAMEREKKRKEVNAKAQLAAEEKVLDAL-VGNKASVATRESFRKRLRNG 178          
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|493505380|ref|WP_006459823.1| (ATP-dependent protease ATP-binding subunit HslU [Thioalkalimicrobium aerophilum] >gi|570729484|gb|AHF00704.1| ATP-dependent protease [Thioalkalimicrobium aerophilum AL3])

HSP 1 Score: 171.785 bits (434), Expect = 3.269e-47
Identity = 80/130 (61.54%), Postives = 103/130 (79.23%), Query Frame = 0
Query:  101 PEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLL 230
            P++IV  LDK++IGQ++AKKA AIA+R RWRR QLP+DLR EVTP NILM GPTG GKTEIARRL+ LA APFIKVEAT++TEVG+VG +   +I+ L+DNAV+++RE   + V   A   AE ++LD+L
Sbjct:    4 PKEIVHELDKHIIGQDDAKKAVAIALRNRWRRMQLPKDLRTEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVDSIIRDLVDNAVKMQREHAVQKVKTRAEDAAEERILDIL 133          
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|499689091|ref|WP_011369825.1| (ATP-dependent protease ATP-binding subunit HslU [Thiomicrospira crunogena] >gi|78363035|gb|ABB41000.1| ATP-dependent hsl protease ATP-binding subunit HslU [Thiomicrospira crunogena XCL-2])

HSP 1 Score: 171.4 bits (433), Expect = 3.910e-47
Identity = 81/130 (62.31%), Postives = 101/130 (77.69%), Query Frame = 0
Query:  101 PEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLL 230
            P++IV  LD Y++GQ EAKK+ AIA+R RWRR QLPE+LR EVTP NILM GPTG GKTEIARRL+ LA APFIKVEAT+YTEVG+VG     +IK L++NA++++RE   K V  +A   AE K+LD+L
Sbjct:    4 PKEIVHELDSYIVGQAEAKKSVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKYTEVGYVGREVDSIIKDLVENAIKMQREQAMKGVKNKAQDLAEEKILDIL 133          
BLAST of EWM28981.1 vs. NCBI_GenBank
Match: gi|522079239|ref|WP_020590448.1| (ATP-dependent protease ATP-binding subunit HslU [Kiloniella laminariae])

HSP 1 Score: 171.4 bits (433), Expect = 5.186e-47
Identity = 86/153 (56.21%), Postives = 114/153 (74.51%), Query Frame = 0
Query:  101 PEDIVAHLDKYVIGQEEAKKATAIAMRMRWRRNQLPEDLRAEVTPSNILMKGPTGTGKTEIARRLSALAEAPFIKVEATRYTEVGFVGANTSDMIKGLLDNAVRLERELEKKNVAAEAHAKAETKVLDLLKLGNPKGLSSEQQQDLRS--REG 251
            P +IV+ LD+Y++GQ EAK+A AIA+R RWRR QLPE++R EV P NILM GPTG GKTEIARRL+ LA APF+KVEAT++TEVG+VG +   +I+ L+D ++ L RE ++K+V A+A   AE +VLD L +G  +G S E +Q  R   REG
Sbjct:   14 PREIVSELDRYIVGQNEAKRAVAIALRNRWRRQQLPEEMREEVLPKNILMIGPTGVGKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIIRDLVDTSILLARENQRKSVVAKAELNAENRVLDAL-VG--EGASEETRQKFRKMLREG 163          
The following BLAST results are available for this feature:
BLAST of EWM28981.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111475|gb|EWM28981.1|0.000e+0100.00heat shock protein atpase subunit [Nannochloropsis... [more]
gi|553194463|ref|XP_005855961.1|1.269e-17797.25heat shock protein atpase subunit, partial [Nannoc... [more]
gi|1200546710|gb|OUW58629.1|7.793e-4854.17HslU--HslV peptidase ATPase subunit [Pelagibactera... [more]
gi|1200612010|gb|OUX21034.1|1.307e-4754.94HslU--HslV peptidase ATPase subunit [Pelagibactera... [more]
gi|1129587001|ref|WP_075534202.1|1.994e-4755.63HslU--HslV peptidase ATPase subunit [Candidatus Pe... [more]
gi|939227480|gb|KPU81987.1|2.415e-4755.56ATP-dependent protease [SAR11 cluster bacterium PR... [more]
gi|1200619010|gb|OUX27644.1|2.912e-4753.57HslU--HslV peptidase ATPase subunit [Rickettsiales... [more]
gi|493505380|ref|WP_006459823.1|3.269e-4761.54ATP-dependent protease ATP-binding subunit HslU [T... [more]
gi|499689091|ref|WP_011369825.1|3.910e-4762.31ATP-dependent protease ATP-binding subunit HslU [T... [more]
gi|522079239|ref|WP_020590448.1|5.186e-4756.21ATP-dependent protease ATP-binding subunit HslU [K... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1695rna1695Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications