rna1694, rna1694 (mRNA) Nannochloropsis gaditana

Overview
Namerna1694
Unique Namerna1694
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1351
Alignment locationCM002457.1:1271085..1271894 -

Link to JBrowse

Properties
Property NameValue
Productatp-dependent protease atp-binding subunit
Orig transcript idgnl|cribi|Naga_100501g1.4120.mrna
Orig protein idgnl|cribi|Naga_100501g1.4120
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1271085..1271894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100501g1gene1631Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28983.1cds1690Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1694rna1694-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1694 ID=rna1694|Name=rna1694|organism=Nannochloropsis gaditana|type=mRNA|length=1351bp
CTCGACAGCCAATTCTTCAGGGGGGAGGTTACCGTGTTGCAAGCCGCAGC
TAGCAGAACCTGCGGATTTTCACACCACTCCCACAGCCTTGTGCCTTATG
CACCATGTTAACACTGCGCCTTATTCCTTACACTCTTAGTCACAGATCTG
TTCGTGCGATCACGAGTGGTACACCGCATGGCCGCGAGACCCGCATGCTA
AACCTCCCGCCGCCCTGAGTTCTGCAGCGTTGTGACCCGATCCTGTTTTC
CCACGGCCATGCCTAATTTCAACATGGTACGCGAGCCTACGGATGGCATT
TCAACTAGGCATGGGATGGCTTTGCTGTTTTTATTGACGACGGCCGTAGC
TGCTGCGGGCGGCGCGGGAGTCGTCCTGCTTCTACAGCAGCGAGGGGCCC
TTTCCTCCCCCCATCCCCTCCCTCCCCCTTCACCGCACAAAAAAGATCGA
GGGAAAAAGCACCATACGCCCGTGGGAAGTCCAAGCAAAAGCAATATGGT
GAGCGATCCCGTGGAAGGGAAGGAAGACATTTTCCCCCCCTTACCACCCA
CAGTGGTGGCTTTGTTACAGTCCACCCGGGTCTGCCATTTGAGCACTGCC
AGCACGGATGGTCTCCCTCATTTGTCCTTGATGCGCTTCACCTACCGGAG
GGAGGAAGAAGTGATAATCATGACGACGCGCACGGACACGAAGAAGTACG
AATTGTTGTGTTCCATGCCCAAAGTGGCGGTCTTAGTCCACGATTTCCCC
TCCCTTCGGGACGAGGAGGACAAGGAGGAGGATAAAAAGGAGGAGGAGGA
GAAGGAAGTAAGAAGTGACATAGGGGATAGAGCTGGGGAGGTGTCGGCAA
AATTCCGAGGGAATGCTTTTTGTGGGCATGGAAAGGGTGAGAAGGGAGGA
GGAGTGGGAGGGAACGAGGACGGAGGAGAAGGAGGAAGCAAGAGGCCACA
TCGACATGAAAAGGAGGATGGAAAGGGCGGCGGAGGCAAAGGGAAAGAAG
GCGGTGACGGAGACGGACACACCTACGCGATCACCCTGAACGGCGTAGCC
CGAATGGAGACAGGGGAGGAAGCGGAACGTTACCGATCGTTACATTTGAA
AAATAACGTCGCCTACTCGCAGTTCATCGAGGGCCCCGGCATAGCAGTCT
TTACGGTGCACGTAATGAGCGCCCGGATTTGCAACGTGAAGGACCGGGTG
ACCTACTGGGATAAGCGCACGGCGACGGTAGAGGAAGGGGTTAGGAGGGA
GGAGAAGGGGGAGGGGAGAGGAAAGAGACAAGAGGAGTGAAGTCGGAATA
CACGGAAGGAAAGGAGTGTGCGATAAAGAAAATGAAAGGAAAATGGAAAG
C
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protein sequence of rna1694

>rna1694-protein ID=rna1694-protein|Name=rna1694|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
SPPPPPPFLLPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKG
EGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQG
RFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVE
AMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATF
VENRLKEFDLTKQDNLSRYIL
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mRNA from alignment at CM002457.1:1271085..1271894-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1694 ID=rna1694|Name=rna1694|organism=Nannochloropsis gaditana|type=mRNA|length=810bp|location=Sequence derived from alignment at CM002457.1:1271085..1271894- (Nannochloropsis gaditana)
TCTCCTCCTCCTCCTCCTCCCTTCCTCCTCCCCTGTCCCCCGCGGGCAGG
CATTGTTTTCATCGACGAGATCGACAAGCTTTGCGGCTCCTCCAGCGACC
ATCCGAGCACGTCCGTGACCACGGGCGGGAGCAGCAGCAGCAACAAAGGC
GAGGGTGTCCAGCGCGAGCTCCTCACCCTCGTGGAAGGATGCGCTGTCCC
CACACGCTACGGCTCGATTCGAACCGACTTTATCCTCTTCATCGCCTCGG
GGGCCTTCCACAATAAGAGCCCCTCCGACCTCCTCCCCGAGCTTCAAGGC
CGTTTCCCTGTCCGGGTGACGCTTCAGCCATTGAAGAAGGAGGATTTGAT
TCAAATTTTGAGCACCAAGAAGTTCAACCTACTGGTCCAAACCGTCCAGC
TACTCGCGACGGAAGGGGTGGAGGTGGAGTTCACGGACTGCGGCGTCGAG
GCCATGGCTGCTTTCGCCCAGCTGATCAATAGGACGCAGCAAGACGTCGG
GGCCCGGCGCTTGAACACTGTGATGCATCGGGTGCTGGAAGACCTGAGCT
ACGCCGCGCCAAGAAGGAGAGGGCAGAAAGTGGTGGTGGACGCGACCTTT
GTGGAGAATCGCTTGAAGGAGTTTGATTTAACCAAACAAGATAACTTGAG
CCGGTATATTCTGTGAGAGAACAGATAGAAGAGCAGTGTGAGAGGACCAG
GATGCCTCCAGGCATGGCCGAGGCCTGAAAGAACACAATAGCGTGCGAGA
AAGAGCGCAAGTTTTGGTGTTGATCGTCGTAGAGAATACGATCATGAGAA
TTCATATGTT
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Coding sequence (CDS) from alignment at CM002457.1:1271085..1271894-

>rna1694 ID=rna1694|Name=rna1694|organism=Nannochloropsis gaditana|type=CDS|length=666bp|location=Sequence derived from alignment at CM002457.1:1271085..1271894- (Nannochloropsis gaditana)
TCTCCTCCTCCTCCTCCTCCCTTCCTCCTCCCCTGTCCCCCGCGGGCAGG
CATTGTTTTCATCGACGAGATCGACAAGCTTTGCGGCTCCTCCAGCGACC
ATCCGAGCACGTCCGTGACCACGGGCGGGAGCAGCAGCAGCAACAAAGGC
GAGGGTGTCCAGCGCGAGCTCCTCACCCTCGTGGAAGGATGCGCTGTCCC
CACACGCTACGGCTCGATTCGAACCGACTTTATCCTCTTCATCGCCTCGG
GGGCCTTCCACAATAAGAGCCCCTCCGACCTCCTCCCCGAGCTTCAAGGC
CGTTTCCCTGTCCGGGTGACGCTTCAGCCATTGAAGAAGGAGGATTTGAT
TCAAATTTTGAGCACCAAGAAGTTCAACCTACTGGTCCAAACCGTCCAGC
TACTCGCGACGGAAGGGGTGGAGGTGGAGTTCACGGACTGCGGCGTCGAG
GCCATGGCTGCTTTCGCCCAGCTGATCAATAGGACGCAGCAAGACGTCGG
GGCCCGGCGCTTGAACACTGTGATGCATCGGGTGCTGGAAGACCTGAGCT
ACGCCGCGCCAAGAAGGAGAGGGCAGAAAGTGGTGGTGGACGCGACCTTT
GTGGAGAATCGCTTGAAGGAGTTTGATTTAACCAAACAAGATAACTTGAG
CCGGTATATTCTGTGA
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Synonyms
Publications