EWM28983.1, cds1690 (CDS) Nannochloropsis gaditana

Overview
NameEWM28983.1
Unique Namecds1690
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1271229..1271894 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28983.1
Productatp-dependent protease atp-binding subunit
Partialtrue
Orig transcript idgnl|cribi|Naga_100501g1.4120.mrna
GbkeyCDS
End range.
End range1271894
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1271229..1271894 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0070011peptidase activity, acting on L-amino acid peptides
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005737cytoplasm
GO:0009376HslUV protease complex
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR004491HslU
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR019489Clp_ATPase_C
Homology
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|585111478|gb|EWM28983.1| (atp-dependent protease atp-binding subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 451.055 bits (1159), Expect = 2.182e-160
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 SPPPPPPFLLPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            SPPPPPPFLLPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL
Sbjct:    1 SPPPPPPFLLPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221          
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|553194476|ref|XP_005855964.1| (atp-dependent protease atp-binding subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422293107|gb|EKU20407.1| atp-dependent protease atp-binding subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 415.231 bits (1066), Expect = 1.714e-146
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:   18 IVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            IVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL
Sbjct:    1 IVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 204          
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|973013871|gb|KUJ95993.1| (ATP-dependent protease ATPase subunit HslU [Desulfonauticus sp. 38_4375])

HSP 1 Score: 218.779 bits (556), Expect = 7.620e-66
Identity = 110/207 (53.14%), Postives = 147/207 (71.01%), Query Frame = 0
Query:   15 RAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            + GI+FIDEIDK+CGSSS          GS +    EGVQR+LL +VEGC V T+YG I+TD ILFIA+GAFH   PSDL+PELQGRFP+RV L+ L KED  +IL+  +  L  Q   LL TEG+E+EFT+  ++ +A+FAQ IN   +++GARRL T+M ++L DLS+ AP R+G+KVV+DA +V+ +L   D+    +LSRYIL
Sbjct:  243 QGGIIFIDEIDKICGSSS----------GSRAEVSREGVQRDLLPVVEGCVVNTKYGMIKTDHILFIAAGAFHLSKPSDLVPELQGRFPLRVELRSLTKEDFYRILTEPQNALTKQYEALLKTEGIELEFTEDALKEIASFAQKINEETENIGARRLYTIMEKILTDLSFEAPERKGEKVVIDAGYVQEKLA--DVKANRDLSRYIL 437          
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1086124421|emb|SDN22103.1| (ATP-dependent HslUV protease ATP-binding subunit HslU [Desulfonauticus submarinus])

HSP 1 Score: 214.927 bits (546), Expect = 2.183e-64
Identity = 106/207 (51.21%), Postives = 148/207 (71.50%), Query Frame = 0
Query:   15 RAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            ++GI+FIDEIDK+CG +          G + +    EGVQR+LL +VEGC V T+YG ++TD ILFIA+GAFH   PSDL+PELQGRFP+RV L+ L K+D  +IL+  +  L  Q   LLATE +++EFTD  ++ MA+FAQ IN   +++GARRL T+M ++L DLS+ AP  +GQKVV+DA +V+++LK  D+ +  +LSRYIL
Sbjct:  243 QSGIIFIDEIDKICGGN----------GQTKAEVSREGVQRDLLPVVEGCVVNTKYGMVKTDHILFIAAGAFHLSKPSDLVPELQGRFPLRVELKSLTKDDFYRILTEPQNALTKQYKALLATEDIDLEFTDSALKEMASFAQKINEETENIGARRLYTLMEKILADLSFEAPEMKGQKVVIDAEYVKDKLK--DVEENRDLSRYIL 437          
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1057163295|ref|WP_068548587.1| (HslU--HslV peptidase ATPase subunit [Thermosulfidibacter takaii] >gi|965596823|dbj|BAT70878.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Thermosulfidibacter takaii ABI70S6])

HSP 1 Score: 214.542 bits (545), Expect = 3.478e-64
Identity = 112/208 (53.85%), Postives = 144/208 (69.23%), Query Frame = 0
Query:   15 RAGIVFIDEIDKLCGSSSDH-PSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            + GIVFIDEIDK+ G    H P  S            EGVQR+LL LVEG +V TRYG +RTD ILFIA+GAFH   PSDL+PELQGRFP+RV L PL KED ++IL+  K  L  Q   LLATEGVE+EFT+ G++ +A  A  +N   +++GARRL TVM ++LE++S+ AP  +GQKVVVD  +V+  LKE  + K ++LS+YIL
Sbjct:  254 QTGIVFIDEIDKIAGKEHTHGPDVS-----------REGVQRDLLPLVEGTSVTTRYGVVRTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELDPLTKEDFVRILTEPKNALTKQYKALLATEGVELEFTEDGIDRIAEIAVQLNEKMENIGARRLYTVMEKMLEEVSFNAPNMKGQKVVVDRKYVDEHLKE--VIKDEDLSKYIL 448          
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1120197673|ref|WP_073065432.1| (HslU--HslV peptidase ATPase subunit [Paracoccus solventivorans] >gi|1109861279|emb|SHM17434.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Paracoccus solventivorans])

HSP 1 Score: 213.001 bits (541), Expect = 1.019e-63
Identity = 112/212 (52.83%), Postives = 146/212 (68.87%), Query Frame = 0
Query:   10 LPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            L    ++GIVFIDEIDK+C  S          GG  S    EGVQR+LL L+EG +V T+YG +RTD ILFIASGAFH   PSDLLPELQGR P+RV L+ L + D I+IL+     L +Q  +L+ TEGVEV FT+ G+ A+A  A  +N + +++GARRL TV+ RV EDLS+ AP RRG++V+VDA FVE++L   DL +  +LSRY+L
Sbjct:  233 LESVQQSGIVFIDEIDKVCARSD-------ARGGEISR---EGVQRDLLPLIEGTSVSTKYGPVRTDHILFIASGAFHIAKPSDLLPELQGRLPIRVELRALTEADFIRILTETDNALTLQYAELMRTEGVEVSFTEDGIAALARIAAEVNGSVENIGARRLYTVIERVFEDLSFTAPDRRGERVLVDAAFVESQLG--DLARSADLSRYVL 432          
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1071433756|ref|WP_069858896.1| (HslU--HslV peptidase ATPase subunit [Desulfoplanes formicivorans] >gi|1041513615|dbj|GAU08895.1| ATP-dependent protease [Desulfoplanes formicivorans])

HSP 1 Score: 212.616 bits (540), Expect = 2.542e-63
Identity = 110/209 (52.63%), Postives = 144/209 (68.90%), Query Frame = 0
Query:   16 AGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKG---EGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            +GIVFIDEIDK+C            +GG +S+      EGVQR+LL +VEGC V T+YG I TD ILFI +GAFH   PSDL+PELQGRFP+RV L+ L KED  +IL+  +  L  Q + LLATE VE++FTD  +  +AAFAQ IN   +++GARRL T+M ++L DLS+ AP R G+KVV+D+ FV  +LK  D+ +  +LSRYIL
Sbjct:  263 SGIVFIDEIDKIC------------SGGQASTKADVSREGVQRDLLPIVEGCVVNTKYGMIHTDHILFIGAGAFHMSKPSDLVPELQGRFPLRVELRALTKEDFYRILTEPQNALTTQYIGLLATENVEIQFTDEALLELAAFAQEINEETENIGARRLYTIMEKILSDLSFDAPDRSGEKVVIDSEFVREQLK--DVKEDRDLSRYIL 457          
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1093226976|emb|SEI08448.1| (ATP-dependent HslUV protease ATP-binding subunit HslU [Paracoccus alkenifer])

HSP 1 Score: 212.231 bits (539), Expect = 2.861e-63
Identity = 112/212 (52.83%), Postives = 145/212 (68.40%), Query Frame = 0
Query:   10 LPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            L    ++GIVFIDEIDK+C  S        + GG  S    EGVQR+LL L+EG  V T+YG +RTD ILFIASGAFH   PSDLLPELQGR P+RV L+ L + D I+IL+     L +Q  +L+ TEGVEV FT+ G+ A+A  A  +N + +++GARRL TV+ RV EDLS+ AP RRG++VVVD  FVE++L   DL +  +LSRY+L
Sbjct:  243 LESVQQSGIVFIDEIDKVCARSD-------SRGGEISR---EGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASGAFHIAKPSDLLPELQGRLPIRVELRALTEADFIRILTETDNALTLQYAELMRTEGVEVSFTEDGIAALARIAAEVNGSVENIGARRLYTVIERVFEDLSFTAPDRRGERVVVDGAFVESQLG--DLARSADLSRYVL 442          
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|647582779|ref|WP_025860375.1| (ATP-dependent protease ATP-binding subunit HslU [Acetobacter papayae])

HSP 1 Score: 211.846 bits (538), Expect = 3.169e-63
Identity = 112/205 (54.63%), Postives = 146/205 (71.22%), Query Frame = 0
Query:   17 GIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            GIVF+DEIDK+C  SS+    S   GG  S    EGVQR+LL L+EG  V T+YG +RTD ILFIASGAFH   P+DLLPELQGR P+RV LQPL + DL QIL+  + +LL Q V LL TEGVE+EFTD  V+A+A  A  IN   +++GARRL TV+ ++LED+S+ AP R+G+K+VV A  V +++    L ++ +LSR+IL
Sbjct:  242 GIVFLDEIDKVCARSSE----SGMKGGDVSR---EGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASGAFHLAKPADLLPELQGRLPIRVELQPLSRADLRQILTAPEHSLLKQYVALLHTEGVELEFTDDAVDALAELAADINERVENIGARRLATVLEKLLEDISFTAPERQGEKMVVSADMVNDKVTP--LAQRGDLSRFIL 437          
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1180194681|ref|WP_083714033.1| (HslU--HslV peptidase ATPase subunit [Paludisphaera borealis])

HSP 1 Score: 212.231 bits (539), Expect = 3.730e-63
Identity = 104/206 (50.49%), Postives = 143/206 (69.42%), Query Frame = 0
Query:   16 AGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
            +GIVFIDEIDK+ G      S  V+          +GVQR+LL +VEG  V T+YG ++TD +LF+A+GAFH   PSDL+PELQGRFP+RV +  L ++D  +IL   + +LL Q   LLA EGVE+ FTD  +EAMA  A  +NR+ Q++GARRL+T++ RVLED+S+ AP R G+++V+DA  V  RL+  D+ K ++LSRYIL
Sbjct:  262 SGIVFIDEIDKIAGGEEGSRSPDVSR---------QGVQRDLLPIVEGTTVNTKYGPVKTDHVLFVAAGAFHRSKPSDLMPELQGRFPIRVEMHDLARDDFARILREPRASLLRQYEALLAAEGVELAFTDDAIEAMADLAFQVNRSTQNIGARRLHTILERVLEDISFEAPERAGERIVIDAKIVRQRLE--DVAKDEDLSRYIL 456          
The following BLAST results are available for this feature:
BLAST of EWM28983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111478|gb|EWM28983.1|2.182e-160100.00atp-dependent protease atp-binding subunit, partia... [more]
gi|553194476|ref|XP_005855964.1|1.714e-146100.00atp-dependent protease atp-binding subunit, partia... [more]
gi|973013871|gb|KUJ95993.1|7.620e-6653.14ATP-dependent protease ATPase subunit HslU [Desulf... [more]
gi|1086124421|emb|SDN22103.1|2.183e-6451.21ATP-dependent HslUV protease ATP-binding subunit H... [more]
gi|1057163295|ref|WP_068548587.1|3.478e-6453.85HslU--HslV peptidase ATPase subunit [Thermosulfidi... [more]
gi|1120197673|ref|WP_073065432.1|1.019e-6352.83HslU--HslV peptidase ATPase subunit [Paracoccus so... [more]
gi|1071433756|ref|WP_069858896.1|2.542e-6352.63HslU--HslV peptidase ATPase subunit [Desulfoplanes... [more]
gi|1093226976|emb|SEI08448.1|2.861e-6352.83ATP-dependent HslUV protease ATP-binding subunit H... [more]
gi|647582779|ref|WP_025860375.1|3.169e-6354.63ATP-dependent protease ATP-binding subunit HslU [A... [more]
gi|1180194681|ref|WP_083714033.1|3.730e-6350.49HslU--HslV peptidase ATPase subunit [Paludisphaera... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1694rna1694Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications