EWM28983.1, cds1690 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|585111478|gb|EWM28983.1| (atp-dependent protease atp-binding subunit, partial [Nannochloropsis gaditana]) HSP 1 Score: 451.055 bits (1159), Expect = 2.182e-160 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query: 1 SPPPPPPFLLPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
SPPPPPPFLLPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL
Sbjct: 1 SPPPPPPFLLPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|553194476|ref|XP_005855964.1| (atp-dependent protease atp-binding subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422293107|gb|EKU20407.1| atp-dependent protease atp-binding subunit, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 415.231 bits (1066), Expect = 1.714e-146 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query: 18 IVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
IVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL
Sbjct: 1 IVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 204
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|973013871|gb|KUJ95993.1| (ATP-dependent protease ATPase subunit HslU [Desulfonauticus sp. 38_4375]) HSP 1 Score: 218.779 bits (556), Expect = 7.620e-66 Identity = 110/207 (53.14%), Postives = 147/207 (71.01%), Query Frame = 0
Query: 15 RAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
+ GI+FIDEIDK+CGSSS GS + EGVQR+LL +VEGC V T+YG I+TD ILFIA+GAFH PSDL+PELQGRFP+RV L+ L KED +IL+ + L Q LL TEG+E+EFT+ ++ +A+FAQ IN +++GARRL T+M ++L DLS+ AP R+G+KVV+DA +V+ +L D+ +LSRYIL
Sbjct: 243 QGGIIFIDEIDKICGSSS----------GSRAEVSREGVQRDLLPVVEGCVVNTKYGMIKTDHILFIAAGAFHLSKPSDLVPELQGRFPLRVELRSLTKEDFYRILTEPQNALTKQYEALLKTEGIELEFTEDALKEIASFAQKINEETENIGARRLYTIMEKILTDLSFEAPERKGEKVVIDAGYVQEKLA--DVKANRDLSRYIL 437
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1086124421|emb|SDN22103.1| (ATP-dependent HslUV protease ATP-binding subunit HslU [Desulfonauticus submarinus]) HSP 1 Score: 214.927 bits (546), Expect = 2.183e-64 Identity = 106/207 (51.21%), Postives = 148/207 (71.50%), Query Frame = 0
Query: 15 RAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
++GI+FIDEIDK+CG + G + + EGVQR+LL +VEGC V T+YG ++TD ILFIA+GAFH PSDL+PELQGRFP+RV L+ L K+D +IL+ + L Q LLATE +++EFTD ++ MA+FAQ IN +++GARRL T+M ++L DLS+ AP +GQKVV+DA +V+++LK D+ + +LSRYIL
Sbjct: 243 QSGIIFIDEIDKICGGN----------GQTKAEVSREGVQRDLLPVVEGCVVNTKYGMVKTDHILFIAAGAFHLSKPSDLVPELQGRFPLRVELKSLTKDDFYRILTEPQNALTKQYKALLATEDIDLEFTDSALKEMASFAQKINEETENIGARRLYTLMEKILADLSFEAPEMKGQKVVIDAEYVKDKLK--DVEENRDLSRYIL 437
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1057163295|ref|WP_068548587.1| (HslU--HslV peptidase ATPase subunit [Thermosulfidibacter takaii] >gi|965596823|dbj|BAT70878.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Thermosulfidibacter takaii ABI70S6]) HSP 1 Score: 214.542 bits (545), Expect = 3.478e-64 Identity = 112/208 (53.85%), Postives = 144/208 (69.23%), Query Frame = 0
Query: 15 RAGIVFIDEIDKLCGSSSDH-PSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
+ GIVFIDEIDK+ G H P S EGVQR+LL LVEG +V TRYG +RTD ILFIA+GAFH PSDL+PELQGRFP+RV L PL KED ++IL+ K L Q LLATEGVE+EFT+ G++ +A A +N +++GARRL TVM ++LE++S+ AP +GQKVVVD +V+ LKE + K ++LS+YIL
Sbjct: 254 QTGIVFIDEIDKIAGKEHTHGPDVS-----------REGVQRDLLPLVEGTSVTTRYGVVRTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELDPLTKEDFVRILTEPKNALTKQYKALLATEGVELEFTEDGIDRIAEIAVQLNEKMENIGARRLYTVMEKMLEEVSFNAPNMKGQKVVVDRKYVDEHLKE--VIKDEDLSKYIL 448
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1120197673|ref|WP_073065432.1| (HslU--HslV peptidase ATPase subunit [Paracoccus solventivorans] >gi|1109861279|emb|SHM17434.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Paracoccus solventivorans]) HSP 1 Score: 213.001 bits (541), Expect = 1.019e-63 Identity = 112/212 (52.83%), Postives = 146/212 (68.87%), Query Frame = 0
Query: 10 LPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
L ++GIVFIDEIDK+C S GG S EGVQR+LL L+EG +V T+YG +RTD ILFIASGAFH PSDLLPELQGR P+RV L+ L + D I+IL+ L +Q +L+ TEGVEV FT+ G+ A+A A +N + +++GARRL TV+ RV EDLS+ AP RRG++V+VDA FVE++L DL + +LSRY+L
Sbjct: 233 LESVQQSGIVFIDEIDKVCARSD-------ARGGEISR---EGVQRDLLPLIEGTSVSTKYGPVRTDHILFIASGAFHIAKPSDLLPELQGRLPIRVELRALTEADFIRILTETDNALTLQYAELMRTEGVEVSFTEDGIAALARIAAEVNGSVENIGARRLYTVIERVFEDLSFTAPDRRGERVLVDAAFVESQLG--DLARSADLSRYVL 432
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1071433756|ref|WP_069858896.1| (HslU--HslV peptidase ATPase subunit [Desulfoplanes formicivorans] >gi|1041513615|dbj|GAU08895.1| ATP-dependent protease [Desulfoplanes formicivorans]) HSP 1 Score: 212.616 bits (540), Expect = 2.542e-63 Identity = 110/209 (52.63%), Postives = 144/209 (68.90%), Query Frame = 0
Query: 16 AGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKG---EGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
+GIVFIDEIDK+C +GG +S+ EGVQR+LL +VEGC V T+YG I TD ILFI +GAFH PSDL+PELQGRFP+RV L+ L KED +IL+ + L Q + LLATE VE++FTD + +AAFAQ IN +++GARRL T+M ++L DLS+ AP R G+KVV+D+ FV +LK D+ + +LSRYIL
Sbjct: 263 SGIVFIDEIDKIC------------SGGQASTKADVSREGVQRDLLPIVEGCVVNTKYGMIHTDHILFIGAGAFHMSKPSDLVPELQGRFPLRVELRALTKEDFYRILTEPQNALTTQYIGLLATENVEIQFTDEALLELAAFAQEINEETENIGARRLYTIMEKILSDLSFDAPDRSGEKVVIDSEFVREQLK--DVKEDRDLSRYIL 457
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1093226976|emb|SEI08448.1| (ATP-dependent HslUV protease ATP-binding subunit HslU [Paracoccus alkenifer]) HSP 1 Score: 212.231 bits (539), Expect = 2.861e-63 Identity = 112/212 (52.83%), Postives = 145/212 (68.40%), Query Frame = 0
Query: 10 LPCPPRAGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
L ++GIVFIDEIDK+C S + GG S EGVQR+LL L+EG V T+YG +RTD ILFIASGAFH PSDLLPELQGR P+RV L+ L + D I+IL+ L +Q +L+ TEGVEV FT+ G+ A+A A +N + +++GARRL TV+ RV EDLS+ AP RRG++VVVD FVE++L DL + +LSRY+L
Sbjct: 243 LESVQQSGIVFIDEIDKVCARSD-------SRGGEISR---EGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASGAFHIAKPSDLLPELQGRLPIRVELRALTEADFIRILTETDNALTLQYAELMRTEGVEVSFTEDGIAALARIAAEVNGSVENIGARRLYTVIERVFEDLSFTAPDRRGERVVVDGAFVESQLG--DLARSADLSRYVL 442
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|647582779|ref|WP_025860375.1| (ATP-dependent protease ATP-binding subunit HslU [Acetobacter papayae]) HSP 1 Score: 211.846 bits (538), Expect = 3.169e-63 Identity = 112/205 (54.63%), Postives = 146/205 (71.22%), Query Frame = 0
Query: 17 GIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
GIVF+DEIDK+C SS+ S GG S EGVQR+LL L+EG V T+YG +RTD ILFIASGAFH P+DLLPELQGR P+RV LQPL + DL QIL+ + +LL Q V LL TEGVE+EFTD V+A+A A IN +++GARRL TV+ ++LED+S+ AP R+G+K+VV A V +++ L ++ +LSR+IL
Sbjct: 242 GIVFLDEIDKVCARSSE----SGMKGGDVSR---EGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASGAFHLAKPADLLPELQGRLPIRVELQPLSRADLRQILTAPEHSLLKQYVALLHTEGVELEFTDDAVDALAELAADINERVENIGARRLATVLEKLLEDISFTAPERQGEKMVVSADMVNDKVTP--LAQRGDLSRFIL 437
BLAST of EWM28983.1 vs. NCBI_GenBank
Match: gi|1180194681|ref|WP_083714033.1| (HslU--HslV peptidase ATPase subunit [Paludisphaera borealis]) HSP 1 Score: 212.231 bits (539), Expect = 3.730e-63 Identity = 104/206 (50.49%), Postives = 143/206 (69.42%), Query Frame = 0
Query: 16 AGIVFIDEIDKLCGSSSDHPSTSVTTGGSSSSNKGEGVQRELLTLVEGCAVPTRYGSIRTDFILFIASGAFHNKSPSDLLPELQGRFPVRVTLQPLKKEDLIQILSTKKFNLLVQTVQLLATEGVEVEFTDCGVEAMAAFAQLINRTQQDVGARRLNTVMHRVLEDLSYAAPRRRGQKVVVDATFVENRLKEFDLTKQDNLSRYIL 221
+GIVFIDEIDK+ G S V+ +GVQR+LL +VEG V T+YG ++TD +LF+A+GAFH PSDL+PELQGRFP+RV + L ++D +IL + +LL Q LLA EGVE+ FTD +EAMA A +NR+ Q++GARRL+T++ RVLED+S+ AP R G+++V+DA V RL+ D+ K ++LSRYIL
Sbjct: 262 SGIVFIDEIDKIAGGEEGSRSPDVSR---------QGVQRDLLPIVEGTTVNTKYGPVKTDHVLFVAAGAFHRSKPSDLMPELQGRFPIRVEMHDLARDDFARILREPRASLLRQYEALLAAEGVELAFTDDAIEAMADLAFQVNRSTQNIGARRLHTILERVLEDISFEAPERAGERIVIDAKIVRQRLE--DVAKDEDLSRYIL 456 The following BLAST results are available for this feature:
BLAST of EWM28983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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